![[Jenkins]](/jenkins/static/57c8a776/images/svgs/logo.svg){kind=logo}
Started by user Steffen Domke Checking out git https://github.com/larson-group/e3sm.git into /home/jenkins/workspace/branch_e3sm_test@script/4cc6f52cf1e9dad06d4feb0210516eb0ecc60bc43393533bf86f627dc2ffd28f to read jenkins_tests/e3sm_run_gfortran_test/Jenkinsfile The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_e3sm_test@script/4cc6f52cf1e9dad06d4feb0210516eb0ecc60bc43393533bf86f627dc2ffd28f/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/bv_efold^{commit} # timeout=10 Checking out Revision 4a895c8ce1e2c797cbfc1e1a47210b02fb66ac31 (refs/remotes/origin/bv_efold) > git config core.sparsecheckout # timeout=10 > git checkout -f 4a895c8ce1e2c797cbfc1e1a47210b02fb66ac31 # timeout=10 Commit message: "Update namelist_definition.xml" > git rev-list --no-walk 4a895c8ce1e2c797cbfc1e1a47210b02fb66ac31 # timeout=10 [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/branch_e3sm_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/branch_e3sm_test/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 2.30.2' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/bv_efold^{commit} # timeout=10 Checking out Revision 4a895c8ce1e2c797cbfc1e1a47210b02fb66ac31 (refs/remotes/origin/bv_efold) > git config core.sparsecheckout # timeout=10 > git checkout -f 4a895c8ce1e2c797cbfc1e1a47210b02fb66ac31 # timeout=10 Commit message: "Update namelist_definition.xml" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Branch and Submodules) [Pipeline] sh + rm -f '/home/jenkins/test_logs/e3sm_run_gfortran_test/*' + git submodule init + git submodule update [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Modify Run Scripts) [Pipeline] sh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_BOMEX.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_DYCOMSrf01.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_RICO.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_ARM97.csh [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run BOMEX) [Pipeline] sh + source /opt/intel/oneapi/setvars.sh --force ++ script_name=setvars.sh ++ config_file= ++ config_array= ++ component_array= ++ warning_tally=0 ++ posix_nl=' ' +++ save_args --force +++ for arg in "$@" +++ sed -e 's/'\''/'\''\\'\'''\''/g' -e '1s/^/'\''/' -e '$s/$/'\'' \\/' +++ printf '%s\n' --force +++ echo ' ' ++ script_args=''\''--force'\'' \ ' ++ _setvars_this_script_name=setvars.sh +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++ '[' setvars.sh = script.sh ']' ++ sourcer= ++ sourced_nm= +++ ps -p 73319 -o comm= ++ sourced_sh=bash +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++ proc_name=script.sh ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n '5.1.4(1)-release' ']' +++ printf '%s: %s' script.sh 'BASH_VERSION = 5.1.4(1)-release' ++ sourcer='script.sh: BASH_VERSION = 5.1.4(1)-release' ++ return 0 ++ sourced_nm=/opt/intel/oneapi/setvars.sh ++ '[' '' = /opt/intel/oneapi/setvars.sh ']' +++ get_script_path /opt/intel/oneapi/setvars.sh +++ script=/opt/intel/oneapi/setvars.sh +++ '[' -L /opt/intel/oneapi/setvars.sh ']' ++++ command dirname -- /opt/intel/oneapi/setvars.sh +++ script_dir=/opt/intel/oneapi ++++ cd /opt/intel/oneapi ++++ command pwd -P +++ script_dir=/opt/intel/oneapi +++ printf %s /opt/intel/oneapi ++ script_root=/opt/intel/oneapi ++ help=0 ++ force=0 ++ config=0 ++ config_file= ++ list_of_args= ++ '[' -n '' ']' +++ printf '%s %s' 'args: Using "$@" for setvars.sh arguments:' --force ++ input_args='args: Using "$@" for setvars.sh arguments: --force' ++ for arg in "$@" ++ shift ++ case "$arg" in ++ force=1 ++ SETVARS_ARGS= ++ export SETVARS_ARGS ++ '[' 0 '!=' 0 ']' ++ '[' '' = 1 ']' ++ '[' 0 -eq 1 ']' ++ version_default=latest +++ awk NF +++ command ls /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ component_array='/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' ++ temp_array= +++ prep_for_eval '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ echo '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' +++ awk NF ++ eval set -- ''\''/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/advisor/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/2021.7.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/python3.9/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/2022.3.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/latest/env/vars.sh'\'' ' +++ set -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0 +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/latest/env ++++ dirname -- /opt/intel/oneapi/advisor/latest +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0 +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/latest/env ++++ dirname -- /opt/intel/oneapi/ccl/latest +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0 +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/latest/env ++++ dirname -- /opt/intel/oneapi/clck/latest +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/latest/env ++++ dirname -- /opt/intel/oneapi/compiler/latest +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0 +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/latest/env ++++ dirname -- /opt/intel/oneapi/dal/latest +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0 +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/latest/env ++++ dirname -- /opt/intel/oneapi/debugger/latest +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0 +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/latest +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0 +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/latest/env ++++ dirname -- /opt/intel/oneapi/dnnl/latest +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0 +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/latest/env ++++ dirname -- /opt/intel/oneapi/dpl/latest +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0 +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/latest/env ++++ dirname -- /opt/intel/oneapi/inspector/latest +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/latest/env ++++ dirname -- /opt/intel/oneapi/intelpython/latest +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9 +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0 +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0 +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/latest/env ++++ dirname -- /opt/intel/oneapi/ippcp/latest +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/latest/env ++++ dirname -- /opt/intel/oneapi/ipp/latest +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0 +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/latest/env ++++ dirname -- /opt/intel/oneapi/itac/latest +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0 +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/latest/env ++++ dirname -- /opt/intel/oneapi/mkl/latest +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0 +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/latest/env ++++ dirname -- /opt/intel/oneapi/mpi/latest +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0 +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/latest/env ++++ dirname -- /opt/intel/oneapi/tbb/latest +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0 +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/latest/env ++++ dirname -- /opt/intel/oneapi/vpl/latest +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env ++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0 +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/latest/env ++++ dirname -- /opt/intel/oneapi/vtune/latest +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' ++ component_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ printf '%s\n' 'advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ uniq ++ component_array='advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ printf '%s\n' 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ wc -l ++ temp_var=21 ++ '[' 21 -le 0 ']' ++ '[' 0 = 1 ']' +++ prep_for_eval 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ echo 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor'\'' \ '\''ccl'\'' \ '\''clck'\'' \ '\''compiler'\'' \ '\''dal'\'' \ '\''debugger'\'' \ '\''dev-utilities'\'' \ '\''dnnl'\'' \ '\''dpcpp-ct'\'' \ '\''dpl'\'' \ '\''inspector'\'' \ '\''intelpython'\'' \ '\''ipp'\'' \ '\''ippcp'\'' \ '\''ipp'\'' \ '\''itac'\'' \ '\''mkl'\'' \ '\''mpi'\'' \ '\''tbb'\'' \ '\''vpl'\'' \ '\''vtune'\'' ' +++ set -- advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune ++ temp_array= ++ for arg in "$@" ++ arg=advisor=latest ++ temp_array='advisor=latest ' ++ for arg in "$@" ++ arg=ccl=latest ++ temp_array='advisor=latest ccl=latest ' ++ for arg in "$@" ++ arg=clck=latest ++ temp_array='advisor=latest ccl=latest clck=latest ' ++ for arg in "$@" ++ arg=compiler=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest ' ++ for arg in "$@" ++ arg=dal=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest ' ++ for arg in "$@" ++ arg=debugger=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest ' ++ for arg in "$@" ++ arg=dev-utilities=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest ' ++ for arg in "$@" ++ arg=dnnl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest ' ++ for arg in "$@" ++ arg=dpcpp-ct=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest ' ++ for arg in "$@" ++ arg=dpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest ' ++ for arg in "$@" ++ arg=inspector=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ' ++ for arg in "$@" ++ arg=intelpython=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ' ++ for arg in "$@" ++ arg=ippcp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest ' ++ for arg in "$@" ++ arg=itac=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest ' ++ for arg in "$@" ++ arg=mkl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest ' ++ for arg in "$@" ++ arg=mpi=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest ' ++ for arg in "$@" ++ arg=tbb=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest ' ++ for arg in "$@" ++ arg=vpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest ' ++ for arg in "$@" ++ arg=vtune=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ '[' 0 = 1 ']' +++ printf '%s\n' 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' +++ awk NF ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' ++ echo ' ' ++ echo ':: initializing oneAPI environment ...' :: initializing oneAPI environment ... ++ echo ' script.sh: BASH_VERSION = 5.1.4(1)-release' script.sh: BASH_VERSION = 5.1.4(1)-release ++ echo ' args: Using "$@" for setvars.sh arguments: --force' args: Using "$@" for setvars.sh arguments: --force ++ ONEAPI_ROOT=/opt/intel/oneapi ++ export ONEAPI_ROOT ++ SETVARS_CALL=1 ++ export SETVARS_CALL ++ temp_var=0 +++ prep_for_eval 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ echo 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor=latest'\'' \ '\''ccl=latest'\'' \ '\''clck=latest'\'' \ '\''compiler=latest'\'' \ '\''dal=latest'\'' \ '\''debugger=latest'\'' \ '\''dev-utilities=latest'\'' \ '\''dnnl=latest'\'' \ '\''dpcpp-ct=latest'\'' \ '\''dpl=latest'\'' \ '\''inspector=latest'\'' \ '\''intelpython=latest'\'' \ '\''ipp=latest'\'' \ '\''ippcp=latest'\'' \ '\''ipp=latest'\'' \ '\''itac=latest'\'' \ '\''mkl=latest'\'' \ '\''mpi=latest'\'' \ '\''tbb=latest'\'' \ '\''vpl=latest'\'' \ '\''vtune=latest'\'' ' +++ set -- advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ++ for arg in "$@" +++ expr advisor=latest : '\(.*\)=.*' ++ arg_base=advisor +++ expr advisor=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ echo ':: advisor -- latest' :: advisor -- latest ++ . /opt/intel/oneapi/advisor/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/advisor/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/advisor/latest/env +++++ cd /opt/intel/oneapi/advisor/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0/env +++++ dirname /opt/intel/oneapi/advisor/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0 ++++ echo /opt/intel/oneapi/advisor/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/advisor/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ export PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ export APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels +++ APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels ++ temp_var=1 ++ for arg in "$@" +++ expr ccl=latest : '\(.*\)=.*' ++ arg_base=ccl +++ expr ccl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ echo ':: ccl -- latest' :: ccl -- latest ++ . /opt/intel/oneapi/ccl/latest/env/vars.sh SETVARS_CALL=1 +++ DEFAULT_CONFIGURATION=cpu_gpu_dpcpp +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ccl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ccl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ccl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ccl/latest/env +++++ cd /opt/intel/oneapi/ccl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ccl/2021.6.0/env ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/env +++ WORK_DIR=/opt/intel/oneapi/ccl/2021.6.0/env ++++ cd /opt/intel/oneapi/ccl/2021.6.0/env/../ ++++ pwd -P +++ CCL_ROOT=/opt/intel/oneapi/ccl/2021.6.0 +++ export CCL_ROOT +++ '[' -z '' ']' +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ ccl_configuration=cpu_gpu_dpcpp +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$ccl_configuration" in +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ export CCL_CONFIGURATION ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=2 ++ for arg in "$@" +++ expr clck=latest : '\(.*\)=.*' ++ arg_base=clck +++ expr clck=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/clck/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/clck/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ echo ':: clck -- latest' :: clck -- latest ++ . /opt/intel/oneapi/clck/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/clck/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/clck/latest/env/vars.sh +++ SCRIPT_NAME=vars.sh ++++ get_script_path /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script=/opt/intel/oneapi/clck/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/clck/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/clck/latest/env +++++ cd /opt/intel/oneapi/clck/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/clck/2021.6.0/env ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/env +++ SCRIPT_PATH=/opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env +++ CLCK_ROOT=/opt/intel/oneapi/clck/2021.6.0 +++ export CLCK_ROOT +++ dir=intel64 ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/bin/intel64 /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/bin/intel64 ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/lib/intel64 /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/include '' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/include ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/include +++ CPLUS_INCLUDE_PATH=/opt/intel/oneapi/clck/2021.6.0/include +++ export CPLUS_INCLUDE_PATH ++++ prepend_path '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' '' ++++ path_to_add='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ prepend_manpath /opt/intel/oneapi/clck/2021.6.0/man '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/man ++++ path_is_now='$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=3 ++ for arg in "$@" +++ expr compiler=latest : '\(.*\)=.*' ++ arg_base=compiler +++ expr compiler=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ echo ':: compiler -- latest' :: compiler -- latest ++ . /opt/intel/oneapi/compiler/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/compiler/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script=/opt/intel/oneapi/compiler/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/compiler/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/compiler/latest/env +++++ cd /opt/intel/oneapi/compiler/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/compiler/2022.1.0/env ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env +++ component_root=/opt/intel/oneapi/compiler/2022.1.0 +++ CMPLR_ROOT=/opt/intel/oneapi/compiler/2022.1.0 +++ export CMPLR_ROOT +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ USE_INTEL_LLVM=0 +++ '[' 1 -gt 0 ']' +++ case "$1" in +++ shift +++ '[' 0 -gt 0 ']' +++ '[' intel64 = ia32 ']' +++ unset INTEL_TARGET_ARCH_IA32 ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' 0 = 1 ']' +++ '[' intel64 = ia32 ']' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin ++++ path_is_now='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' intel64 = ia32 ']' +++ '[' -n '' ']' +++ '[' -f /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ']' +++ FPGA_VARS_DIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga +++ export FPGA_VARS_DIR +++ FPGA_VARS_ARGS= +++ export FPGA_VARS_ARGS +++ . /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ++++ SCRIPTDIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ icdadd libalteracl.so ++++ '[' -z '' ']' ++++ export OCL_ICD_FILENAMES=libalteracl.so ++++ OCL_ICD_FILENAMES=libalteracl.so ++++ icdadd libintelocl_emu.so ++++ '[' -z x ']' ++++ case ":$OCL_ICD_FILENAMES:" in ++++ export OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ export ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ export INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ export PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ uname -m ++++ ARCH=x86_64 ++++ arch_type= ++++ case $ARCH in ++++ arch_type=linux64 ++++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z libintelocl_emu.so:libalteracl.so ']' +++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so +++ '[' -n '' ']' +++ export OCL_ICD_FILENAMES ++++ prepend_manpath /opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export NLSPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=4 ++ for arg in "$@" +++ expr dal=latest : '\(.*\)=.*' ++ arg_base=dal +++ expr dal=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dal/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dal/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ echo ':: dal -- latest' :: dal -- latest ++ . /opt/intel/oneapi/dal/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dal/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dal/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dal/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dal/latest/env +++++ cd /opt/intel/oneapi/dal/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dal/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dal/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env +++ component_root=/opt/intel/oneapi/dal/2021.6.0 +++ __daal_tmp_dir='<INSTALLDIR>' +++ __daal_tmp_dir='<INSTALLDIR>/dal' +++ '[' '!' -d '<INSTALLDIR>/dal' ']' +++ __daal_tmp_dir=/opt/intel/oneapi/dal/2021.6.0 +++ export DAL_MAJOR_BINARY=1 +++ DAL_MAJOR_BINARY=1 +++ export DAL_MINOR_BINARY=1 +++ DAL_MINOR_BINARY=1 +++ export DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++ temp_var=5 ++ for arg in "$@" +++ expr debugger=latest : '\(.*\)=.*' ++ arg_base=debugger +++ expr debugger=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ echo ':: debugger -- latest' :: debugger -- latest ++ . /opt/intel/oneapi/debugger/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/debugger/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script=/opt/intel/oneapi/debugger/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/debugger/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/debugger/latest/env +++++ cd /opt/intel/oneapi/debugger/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/debugger/2021.6.0/env ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env +++ gdb_root=/opt/intel/oneapi/debugger/2021.6.0 +++ my_ld_path=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/dep '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/dep ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/dep +++ INTEL_PYTHONHOME=/opt/intel/oneapi/debugger/2021.6.0/dep +++ export INTEL_PYTHONHOME ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ path_is_now='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_manpath /opt/intel/oneapi/debugger/2021.6.0/documentation/man '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/man ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ INFOPATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ export INFOPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ GDB_INFO=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ export GDB_INFO ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=6 ++ for arg in "$@" +++ expr dev-utilities=latest : '\(.*\)=.*' ++ arg_base=dev-utilities +++ expr dev-utilities=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ echo ':: dev-utilities -- latest' :: dev-utilities -- latest ++ . /opt/intel/oneapi/dev-utilities/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dev-utilities/latest/env +++++ cd /opt/intel/oneapi/dev-utilities/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ component_root=/opt/intel/oneapi/dev-utilities/2021.6.0 ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/bin /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/include /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=7 ++ for arg in "$@" +++ expr dnnl=latest : '\(.*\)=.*' ++ arg_base=dnnl +++ expr dnnl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ echo ':: dnnl -- latest' :: dnnl -- latest ++ . /opt/intel/oneapi/dnnl/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= +++ __dnnl_known_configurations='cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ cut '-d ' -f1 +++ __dnnl_def_configuration=cpu_dpcpp_gpu_dpcpp ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dnnl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dnnl/latest/env +++++ cd /opt/intel/oneapi/dnnl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ echo /opt/intel/oneapi/dnnl/2022.1.0/env +++ __dnnl_this_dir_path=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ dnnl_check_local_env +++++ basename -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ __dnnl_this_dir_name=env +++++ dnnl_match_configuration env +++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' +++++ tr ' ' '\n' +++++ read -r item +++++ '[' env = cpu_dpcpp_gpu_dpcpp ']' +++++ read -r item +++++ '[' env = cpu_gomp ']' +++++ read -r item +++++ '[' env = cpu_iomp ']' +++++ read -r item +++++ '[' env = cpu_tbb ']' +++++ read -r item +++++ echo '' ++++ echo '' +++ '[' -n '' ']' +++ dnnl_env_vars_main SETVARS_CALL=1 +++ __dnnl_configuration= +++ for param in "$@" +++ __tmp_dnnl_configuration=SETVARS_CALL=1 +++ '[' SETVARS_CALL=1 = --dnnl-configuration=SETVARS_CALL=1 ']' +++ '[' -n '' ']' +++ __dnnl_configuration=cpu_dpcpp_gpu_dpcpp ++++ get_script_path /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ '[' -L /opt/intel/oneapi/dnnl/2022.1.0/env ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++++ cd /opt/intel/oneapi/dnnl/2022.1.0 +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 ++++ echo /opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_base_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_set_env_vars /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ export DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ '[' -n '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ export LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ export CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' -n /opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ unset __dnnl_known_configurations +++ unset __dnnl_def_configuration +++ unset __dnnl_this_dir_path +++ unset __dnnl_this_dir_name +++ unset __dnnl_configuration ++ temp_var=8 ++ for arg in "$@" +++ expr dpcpp-ct=latest : '\(.*\)=.*' ++ arg_base=dpcpp-ct +++ expr dpcpp-ct=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ echo ':: dpcpp-ct -- latest' :: dpcpp-ct -- latest ++ . /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/latest/env +++++ cd /opt/intel/oneapi/dpcpp-ct/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ component_root=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ DPCT_BUNDLE_ROOT=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ export DPCT_BUNDLE_ROOT ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/include /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=9 ++ for arg in "$@" +++ expr dpl=latest : '\(.*\)=.*' ++ arg_base=dpl +++ expr dpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ echo ':: dpl -- latest' :: dpl -- latest ++ . /opt/intel/oneapi/dpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ rreadlink /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ target=/opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname= +++++ targetDir= +++++ CDPATH= +++++ '[' -n '' ']' +++++ : +++++ '[' -L /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ '[' -e /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++++++ command dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ command cd /opt/intel/oneapi/dpl/latest/env ++++++ command basename -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname=vars.sh +++++ '[' vars.sh = / ']' +++++ '[' -L vars.sh ']' +++++ break ++++++ command pwd -P +++++ targetDir=/opt/intel/oneapi/dpl/2021.7.0/env +++++ '[' vars.sh = . ']' +++++ '[' vars.sh = .. ']' +++++ command printf '%s\n' /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++ _onedpl_scrip_path=/opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env +++ DPL_ROOT=/opt/intel/oneapi/dpl/2021.7.0 +++ export DPL_ROOT ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/linux/include /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/linux/include ++++ path_is_now=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=10 ++ for arg in "$@" +++ expr inspector=latest : '\(.*\)=.*' ++ arg_base=inspector +++ expr inspector=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ echo ':: inspector -- latest' :: inspector -- latest ++ . /opt/intel/oneapi/inspector/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/inspector/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/inspector/latest/env +++++ cd /opt/intel/oneapi/inspector/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0/env +++++ dirname /opt/intel/oneapi/inspector/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0 ++++ echo /opt/intel/oneapi/inspector/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 +++ INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++ temp_var=11 ++ for arg in "$@" +++ expr intelpython=latest : '\(.*\)=.*' ++ arg_base=intelpython +++ expr intelpython=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ echo ':: intelpython -- latest' :: intelpython -- latest ++ . /opt/intel/oneapi/intelpython/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/intelpython/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/intelpython/latest/env +++++ cd /opt/intel/oneapi/intelpython/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/intelpython/python3.9/env ++++ printf %s /opt/intel/oneapi/intelpython/python3.9/env +++ SCRIPTPATH=/opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env +++ ROOTPATH=/opt/intel/oneapi/intelpython/python3.9 ++++ basename /opt/intel/oneapi/intelpython/python3.9 +++ VERSION=python3.9 ++++ dirname /opt/intel/oneapi/intelpython/python3.9 +++ PARENTDIR=/opt/intel/oneapi/intelpython ++++ basename /opt/intel/oneapi/intelpython +++ CURRENTENV=intelpython +++ MAINENV=intelpython +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.10 ']' +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.9 ']' +++ PYVER=python3.9 +++ POTENTIAL_ACTIVATE_PATH=/opt/intel/oneapi/intelpython/python3.9/../../intelpython/python3.9/bin/activate +++ '[' /opt/intel/oneapi/intelpython/latest/env/vars.sh = intelpython/latest/env/vars.sh ']' +++ export OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ '[' intelpython '!=' intelpython ']' +++ '[' -n 1 ']' +++ '[' -n '' ']' +++ BACKUP_SETVARS_CALL_PARAMETERS=SETVARS_CALL=1 +++ SANITIZED_SETVARS_CALL_PARAMETERS= +++ set -- '' ++++ env ++++ grep -q PS1 +++ '[' ']' +++ PS1_IS_SET=0 +++ BACKUP_PROMPT= +++ . /opt/intel/oneapi/intelpython/python3.9/bin/activate ++++ _CONDA_ROOT=/opt/intel/oneapi/intelpython/latest ++++ '[' -n '' ']' ++++ . /opt/intel/oneapi/intelpython/latest/etc/profile.d/conda.sh +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ '[' -z '' ']' +++++ export CONDA_SHLVL=0 +++++ CONDA_SHLVL=0 +++++ '[' -n '' ']' +++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ '[' -z '' ']' +++++ PS1= ++++ conda activate '' ++++ local cmd=activate ++++ case "$cmd" in ++++ __conda_activate activate '' ++++ '[' -n '' ']' ++++ local ask_conda +++++ PS1= +++++ __conda_exe shell.posix activate '' +++++ __add_sys_prefix_to_path +++++ '[' -n '' ']' ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda +++++ SYSP=/opt/intel/oneapi/intelpython/latest/bin ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ SYSP=/opt/intel/oneapi/intelpython/latest +++++ '[' -n '' ']' +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ /opt/intel/oneapi/intelpython/latest/bin/conda shell.posix activate '' ++++ ask_conda='PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' ++++ eval 'PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' +++++ PS1='(intelpython-python3.9) ' +++++ export PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ export CONDA_SHLVL=1 +++++ CONDA_SHLVL=1 +++++ export CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ export 'CONDA_PROMPT_MODIFIER=(intelpython-python3.9) ' +++++ CONDA_PROMPT_MODIFIER='(intelpython-python3.9) ' +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh ++++++ '[' 1 '!=' 1 ']' +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh ++++++ '[' libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so = '' ']' ++++ __conda_hashr ++++ '[' -n '' ']' ++++ '[' -n '' ']' ++++ hash -r +++ '[' 0 -eq 1 ']' +++ PS1= +++ unset BACKUP_PROMPT +++ set -- SETVARS_CALL=1 +++ unset BACKUP_SETVARS_CALL_PARAMETERS +++ unset SANITIZED_SETVARS_CALL_PARAMETERS +++ unset OVERWRITE_CONDA_DEFAULT_ENV +++ unset SCRIPTPATH +++ unset ROOTPATH +++ unset VERSION +++ unset CURRENTENV +++ unset PARENTDIR +++ unset MAINENV ++ temp_var=12 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=13 ++ for arg in "$@" +++ expr ippcp=latest : '\(.*\)=.*' ++ arg_base=ippcp +++ expr ippcp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ echo ':: ippcp -- latest' :: ippcp -- latest ++ . /opt/intel/oneapi/ippcp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ippcp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ippcp/latest/env +++++ cd /opt/intel/oneapi/ippcp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ echo /opt/intel/oneapi/ippcp/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env +++ component_root=/opt/intel/oneapi/ippcp/2021.6.0 +++ IPPCRYPTOROOT=/opt/intel/oneapi/ippcp/2021.6.0 +++ export IPPCRYPTOROOT +++ __ippcp_tmp_target_arch=intel64 +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPPCP_TARGET_ARCH=intel64 +++ IPPCP_TARGET_ARCH=intel64 ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/include /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=14 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=15 ++ for arg in "$@" +++ expr itac=latest : '\(.*\)=.*' ++ arg_base=itac +++ expr itac=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/itac/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/itac/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ echo ':: itac -- latest' :: itac -- latest ++ . /opt/intel/oneapi/itac/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/itac/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++++ prepend_path /opt/intel/licenses:/home/jenkins/intel/licenses '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_to_add=/opt/intel/licenses:/home/jenkins/intel/licenses ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ']' ++++ printf %s '/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ get_script_path /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script=/opt/intel/oneapi/itac/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/itac/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/itac/latest/env +++++ cd /opt/intel/oneapi/itac/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/itac/2021.6.0/env ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env +++ component_root=/opt/intel/oneapi/itac/2021.6.0 +++ VT_ROOT=/opt/intel/oneapi/itac/2021.6.0 +++ export VT_ROOT +++ VT_MPI=impi4 +++ VT_LIB_DIR=/opt/intel/oneapi/itac/2021.6.0/lib +++ VT_SLIB_DIR=/opt/intel/oneapi/itac/2021.6.0/slib +++ VT_ADD_LIBS='-ldwarf -lelf -lvtunwind -lm -lpthread' +++ export VT_MPI VT_LIB_DIR VT_SLIB_DIR VT_ADD_LIBS ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/slib '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/slib ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/bin /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_manpath /opt/intel/oneapi/itac/2021.6.0/man '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/man ++++ path_is_now='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=16 ++ for arg in "$@" +++ expr mkl=latest : '\(.*\)=.*' ++ arg_base=mkl +++ expr mkl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ echo ':: mkl -- latest' :: mkl -- latest ++ . /opt/intel/oneapi/mkl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mkl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++ my_script_name=vars.sh ++++ get_script_path /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mkl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mkl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mkl/latest/env +++++ cd /opt/intel/oneapi/mkl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mkl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/mkl/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env +++ MKLROOT=/opt/intel/oneapi/mkl/2022.1.0 +++ export MKLROOT +++ __mkl_tmp_SCRIPT_NAME=vars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_TARGET_ARCH=intel64 +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_help= +++ '[' -z SETVARS_CALL=1 ']' +++ '[' -n SETVARS_CALL=1 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ '[' SETVARS_CALL=1 = lp64 ']' +++ '[' SETVARS_CALL=1 = ilp64 ']' +++ '[' SETVARS_CALL=1 = mod ']' +++ '[' SETVARS_CALL=1 = verbose ']' +++ '[' SETVARS_CALL=1 = help ']' +++ shift +++ '[' -n '' ']' +++ '[' -z '' ']' +++ __mkl_lib_dir=/opt/intel/oneapi/mkl/2022.1.0/lib +++ __cpath=/opt/intel/oneapi/mkl/2022.1.0/include +++ __mkl_bin_dir=/opt/intel/oneapi/mkl/2022.1.0/bin +++ __ld_library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __path=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64 +++ __nlspath=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' '' = verbose ']' ++ temp_var=17 ++ for arg in "$@" +++ expr mpi=latest : '\(.*\)=.*' ++ arg_base=mpi +++ expr mpi=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ echo ':: mpi -- latest' :: mpi -- latest ++ . /opt/intel/oneapi/mpi/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mpi/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mpi/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mpi/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mpi/latest/env +++++ cd /opt/intel/oneapi/mpi/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mpi/2021.6.0/env ++++ printf %s /opt/intel/oneapi/mpi/2021.6.0/env +++ MPIVARS_DIR=/opt/intel/oneapi/mpi/2021.6.0/env ++++ cd /opt/intel/oneapi/mpi/2021.6.0/env/.. ++++ pwd +++ I_MPI_ROOT=/opt/intel/oneapi/mpi/2021.6.0 +++ export I_MPI_ROOT +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH +++ PLATFORM= +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' -z /opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar ']' +++ CLASSPATH=/opt/intel/oneapi/mpi/2021.6.0//lib/mpi.jar:/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '' ']' +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ CPATH=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH +++ export 'MANPATH=/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ MANPATH='/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib/prov:/usr/lib64/libfabric +++ export FI_PROVIDER_PATH ++ temp_var=18 ++ for arg in "$@" +++ expr tbb=latest : '\(.*\)=.*' ++ arg_base=tbb +++ expr tbb=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ echo ':: tbb -- latest' :: tbb -- latest ++ . /opt/intel/oneapi/tbb/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/tbb/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/tbb/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/tbb/latest/env +++++ cd /opt/intel/oneapi/tbb/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/tbb/2021.6.0/env ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env +++ TBBROOT=/opt/intel/oneapi/tbb/2021.6.0/env/.. +++ TBB_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ for arg in "$@" +++ case "$arg" in +++ TBB_LIB_NAME=libtbb.so.12 +++ TBB_LIB_DIR=intel64/gcc4.8 +++ '[' -e /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8/libtbb.so.12 ']' +++ export TBBROOT ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../include /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../include ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/.. /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/.. ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=19 ++ for arg in "$@" +++ expr vpl=latest : '\(.*\)=.*' ++ arg_base=vpl +++ expr vpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ echo ':: vpl -- latest' :: vpl -- latest ++ . /opt/intel/oneapi/vpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-808d130b/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 73319 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/vpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vpl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vpl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vpl/latest/env +++++ cd /opt/intel/oneapi/vpl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/vpl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/env +++ script_path=/opt/intel/oneapi/vpl/2022.1.0/env +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ cd /opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ pwd +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0 +++ vpl_include=/opt/intel/oneapi/vpl/2022.1.0/include +++ vpl_lib=/opt/intel/oneapi/vpl/2022.1.0/lib +++ vpl_bin=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/include /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/bin /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0 /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0 ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=20 ++ for arg in "$@" +++ expr vtune=latest : '\(.*\)=.*' ++ arg_base=vtune +++ expr vtune=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ echo ':: vtune -- latest' :: vtune -- latest ++ . /opt/intel/oneapi/vtune/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vtune/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vtune/latest/env +++++ cd /opt/intel/oneapi/vtune/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0/env +++++ dirname /opt/intel/oneapi/vtune/2022.3.0/env ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0 ++++ echo /opt/intel/oneapi/vtune/2022.3.0 +++ PRODUCT_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ export VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++ temp_var=21 ++ '[' 21 -eq 0 ']' ++ echo ':: oneAPI environment initialized ::' :: oneAPI environment initialized :: ++ echo ' ' ++ '[' 0 -ne 0 ']' ++ eval set -- ''\''--force'\'' \ ' +++ set -- --force ++ prep_for_exit 0 ++ script_return_code=0 ++ unset -v SETVARS_CALL ++ unset -v SETVARS_ARGS ++ unset -v SETVARS_VARS_PATH ++ '[' 0 = '' ']' ++ '[' 0 -eq 0 ']' ++ SETVARS_COMPLETED=1 ++ export SETVARS_COMPLETED ++ return 0 ++ return + bash -c 'export e3smSource=/home/jenkins/workspace/branch_e3sm_test; csh nightly_test/nightly_e3sm_scm_BOMEX.csh' Compset longname is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_e3sm_test/cime_config/allactive/config_pesall.xml Could not find machine match for 'nelson.localdomain' or 'nelson' Machine is nelson Pes setting: grid is a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Pes setting: compset is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 16, 'NTASKS_LND': 16, 'NTASKS_ROF': 16, 'NTASKS_ICE': 16, 'NTASKS_OCN': 16, 'NTASKS_GLC': 16, 'NTASKS_WAV': 16, 'NTASKS_CPL': 16} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Components in compset are: ['eam', 'elm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp'] No charge_account info available, using value from PROJECT e3sm model version found: 4a895c8ce1 Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: Unknown Job Queue specified use --force to set /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/env_mach_specific.xml already exists, delete to replace Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup 2023-06-29 18:11:57 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-06-29 18:11:57 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-06-29 18:11:57 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-06-29 18:11:58 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-06-29 18:11:58 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-06-29 18:11:58 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-06-29 18:11:58 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-06-29 18:11:58 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-06-29 18:11:58 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-06-29 18:11:58 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts sharedlib_only is False model_only is False Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Generating component namelists as part of build 2023-06-29 18:12:00 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-06-29 18:12:01 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-06-29 18:12:01 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-06-29 18:12:01 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-06-29 18:12:01 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-06-29 18:12:01 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-06-29 18:12:01 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-06-29 18:12:01 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-06-29 18:12:01 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-06-29 18:12:01 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Building gptl with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gptl.bldlog.230629-181200 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/mct.bldlog.230629-181200 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/pio.bldlog.230629-181200 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/csm_share.bldlog.230629-181200 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings Building kokkos with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/kokkos.bldlog.230629-181200 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.kokkos Configuring full e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.230629-181200 Calling cmake directly, see top of log file for specific call Building e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.230629-181200 Calling make, see top of log file for specific call Total build time: 510.155308 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-06-29 18:20:31 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-06-29 18:20:31 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-06-29 18:20:31 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-06-29 18:20:31 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-06-29 18:20:31 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-06-29 18:20:31 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-06-29 18:20:31 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-06-29 18:20:31 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-06-29 18:20:31 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-06-29 18:20:31 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Checking that inputdata is available as part of case submission Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/elm.input_data_list' Model elm no file specified for finidat Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/eam.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2023-06-29 18:20:32 CASE.RUN BEGINS HERE 2023-06-29 18:20:32 RUN_MODEL BEGINS HERE 2023-06-29 18:20:32 PRE_RUN_CHECK BEGINS HERE Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-06-29 18:20:32 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts 2023-06-29 18:20:32 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-06-29 18:20:32 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-06-29 18:20:32 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-06-29 18:20:32 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-06-29 18:20:32 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-06-29 18:20:32 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-06-29 18:20:32 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-06-29 18:20:32 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-06-29 18:20:32 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-06-29 18:20:32 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml 2023-06-29 18:20:32 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2023-06-29 18:20:32 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe >> e3sm.log.$LID 2>&1 2023-06-29 18:20:32 SAVE_PRERUN_PROVENANCE BEGINS HERE 2023-06-29 18:20:33 SAVE_PRERUN_PROVENANCE HAS FINISHED 2023-06-29 18:20:33 MODEL EXECUTION BEGINS HERE 2023-06-29 18:20:34 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/run/e3sm.log.230629-182032 Submitted job case.run with id None BOMEX was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run DYCOMSrf01) [Pipeline] sh + source /opt/intel/oneapi/setvars.sh --force ++ script_name=setvars.sh ++ config_file= ++ config_array= ++ component_array= ++ warning_tally=0 ++ posix_nl=' ' +++ save_args --force +++ for arg in "$@" +++ printf '%s\n' --force +++ sed -e 's/'\''/'\''\\'\'''\''/g' -e '1s/^/'\''/' -e '$s/$/'\'' \\/' +++ echo ' ' ++ script_args=''\''--force'\'' \ ' ++ _setvars_this_script_name=setvars.sh +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++ '[' setvars.sh = script.sh ']' ++ sourcer= ++ sourced_nm= +++ ps -p 287982 -o comm= ++ sourced_sh=bash +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++ proc_name=script.sh ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n '5.1.4(1)-release' ']' +++ printf '%s: %s' script.sh 'BASH_VERSION = 5.1.4(1)-release' ++ sourcer='script.sh: BASH_VERSION = 5.1.4(1)-release' ++ return 0 ++ sourced_nm=/opt/intel/oneapi/setvars.sh ++ '[' '' = /opt/intel/oneapi/setvars.sh ']' +++ get_script_path /opt/intel/oneapi/setvars.sh +++ script=/opt/intel/oneapi/setvars.sh +++ '[' -L /opt/intel/oneapi/setvars.sh ']' ++++ command dirname -- /opt/intel/oneapi/setvars.sh +++ script_dir=/opt/intel/oneapi ++++ cd /opt/intel/oneapi ++++ command pwd -P +++ script_dir=/opt/intel/oneapi +++ printf %s /opt/intel/oneapi ++ script_root=/opt/intel/oneapi ++ help=0 ++ force=0 ++ config=0 ++ config_file= ++ list_of_args= ++ '[' -n '' ']' +++ printf '%s %s' 'args: Using "$@" for setvars.sh arguments:' --force ++ input_args='args: Using "$@" for setvars.sh arguments: --force' ++ for arg in "$@" ++ shift ++ case "$arg" in ++ force=1 ++ SETVARS_ARGS= ++ export SETVARS_ARGS ++ '[' 0 '!=' 0 ']' ++ '[' '' = 1 ']' ++ '[' 0 -eq 1 ']' ++ version_default=latest +++ awk NF +++ command ls /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ component_array='/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' ++ temp_array= +++ prep_for_eval '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' +++ echo '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' ++ eval set -- ''\''/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/advisor/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/2021.7.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/python3.9/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/2022.3.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/latest/env/vars.sh'\'' ' +++ set -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0 +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/latest/env ++++ dirname -- /opt/intel/oneapi/advisor/latest +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0 +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/latest/env ++++ dirname -- /opt/intel/oneapi/ccl/latest +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0 +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/latest/env ++++ dirname -- /opt/intel/oneapi/clck/latest +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/latest/env ++++ dirname -- /opt/intel/oneapi/compiler/latest +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0 +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/latest/env ++++ dirname -- /opt/intel/oneapi/dal/latest +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0 +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/latest/env ++++ dirname -- /opt/intel/oneapi/debugger/latest +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0 +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/latest +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0 +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/latest/env ++++ dirname -- /opt/intel/oneapi/dnnl/latest +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0 +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/latest/env ++++ dirname -- /opt/intel/oneapi/dpl/latest +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0 +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/latest/env ++++ dirname -- /opt/intel/oneapi/inspector/latest +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/latest/env ++++ dirname -- /opt/intel/oneapi/intelpython/latest +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9 +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0 +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0 +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/latest/env ++++ dirname -- /opt/intel/oneapi/ippcp/latest +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/latest/env ++++ dirname -- /opt/intel/oneapi/ipp/latest +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0 +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/latest/env ++++ dirname -- /opt/intel/oneapi/itac/latest +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0 +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/latest/env ++++ dirname -- /opt/intel/oneapi/mkl/latest +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0 +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/latest/env ++++ dirname -- /opt/intel/oneapi/mpi/latest +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0 +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/latest/env ++++ dirname -- /opt/intel/oneapi/tbb/latest +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0 +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/latest/env ++++ dirname -- /opt/intel/oneapi/vpl/latest +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env ++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0 +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/latest/env ++++ dirname -- /opt/intel/oneapi/vtune/latest +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' ++ component_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ printf '%s\n' 'advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ uniq ++ component_array='advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ printf '%s\n' 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ wc -l ++ temp_var=21 ++ '[' 21 -le 0 ']' ++ '[' 0 = 1 ']' +++ prep_for_eval 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ echo 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor'\'' \ '\''ccl'\'' \ '\''clck'\'' \ '\''compiler'\'' \ '\''dal'\'' \ '\''debugger'\'' \ '\''dev-utilities'\'' \ '\''dnnl'\'' \ '\''dpcpp-ct'\'' \ '\''dpl'\'' \ '\''inspector'\'' \ '\''intelpython'\'' \ '\''ipp'\'' \ '\''ippcp'\'' \ '\''ipp'\'' \ '\''itac'\'' \ '\''mkl'\'' \ '\''mpi'\'' \ '\''tbb'\'' \ '\''vpl'\'' \ '\''vtune'\'' ' +++ set -- advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune ++ temp_array= ++ for arg in "$@" ++ arg=advisor=latest ++ temp_array='advisor=latest ' ++ for arg in "$@" ++ arg=ccl=latest ++ temp_array='advisor=latest ccl=latest ' ++ for arg in "$@" ++ arg=clck=latest ++ temp_array='advisor=latest ccl=latest clck=latest ' ++ for arg in "$@" ++ arg=compiler=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest ' ++ for arg in "$@" ++ arg=dal=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest ' ++ for arg in "$@" ++ arg=debugger=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest ' ++ for arg in "$@" ++ arg=dev-utilities=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest ' ++ for arg in "$@" ++ arg=dnnl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest ' ++ for arg in "$@" ++ arg=dpcpp-ct=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest ' ++ for arg in "$@" ++ arg=dpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest ' ++ for arg in "$@" ++ arg=inspector=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ' ++ for arg in "$@" ++ arg=intelpython=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ' ++ for arg in "$@" ++ arg=ippcp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest ' ++ for arg in "$@" ++ arg=itac=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest ' ++ for arg in "$@" ++ arg=mkl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest ' ++ for arg in "$@" ++ arg=mpi=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest ' ++ for arg in "$@" ++ arg=tbb=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest ' ++ for arg in "$@" ++ arg=vpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest ' ++ for arg in "$@" ++ arg=vtune=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ '[' 0 = 1 ']' +++ printf '%s\n' 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' +++ awk NF ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' ++ echo ' ' ++ echo ':: initializing oneAPI environment ...' :: initializing oneAPI environment ... ++ echo ' script.sh: BASH_VERSION = 5.1.4(1)-release' script.sh: BASH_VERSION = 5.1.4(1)-release ++ echo ' args: Using "$@" for setvars.sh arguments: --force' args: Using "$@" for setvars.sh arguments: --force ++ ONEAPI_ROOT=/opt/intel/oneapi ++ export ONEAPI_ROOT ++ SETVARS_CALL=1 ++ export SETVARS_CALL ++ temp_var=0 +++ prep_for_eval 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ echo 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor=latest'\'' \ '\''ccl=latest'\'' \ '\''clck=latest'\'' \ '\''compiler=latest'\'' \ '\''dal=latest'\'' \ '\''debugger=latest'\'' \ '\''dev-utilities=latest'\'' \ '\''dnnl=latest'\'' \ '\''dpcpp-ct=latest'\'' \ '\''dpl=latest'\'' \ '\''inspector=latest'\'' \ '\''intelpython=latest'\'' \ '\''ipp=latest'\'' \ '\''ippcp=latest'\'' \ '\''ipp=latest'\'' \ '\''itac=latest'\'' \ '\''mkl=latest'\'' \ '\''mpi=latest'\'' \ '\''tbb=latest'\'' \ '\''vpl=latest'\'' \ '\''vtune=latest'\'' ' +++ set -- advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ++ for arg in "$@" +++ expr advisor=latest : '\(.*\)=.*' ++ arg_base=advisor +++ expr advisor=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ echo ':: advisor -- latest' :: advisor -- latest ++ . /opt/intel/oneapi/advisor/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/advisor/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/advisor/latest/env +++++ cd /opt/intel/oneapi/advisor/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0/env +++++ dirname /opt/intel/oneapi/advisor/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0 ++++ echo /opt/intel/oneapi/advisor/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/advisor/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ export PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ export APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels +++ APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels ++ temp_var=1 ++ for arg in "$@" +++ expr ccl=latest : '\(.*\)=.*' ++ arg_base=ccl +++ expr ccl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ echo ':: ccl -- latest' :: ccl -- latest ++ . /opt/intel/oneapi/ccl/latest/env/vars.sh SETVARS_CALL=1 +++ DEFAULT_CONFIGURATION=cpu_gpu_dpcpp +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ccl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ccl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ccl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ccl/latest/env +++++ cd /opt/intel/oneapi/ccl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ccl/2021.6.0/env ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/env +++ WORK_DIR=/opt/intel/oneapi/ccl/2021.6.0/env ++++ cd /opt/intel/oneapi/ccl/2021.6.0/env/../ ++++ pwd -P +++ CCL_ROOT=/opt/intel/oneapi/ccl/2021.6.0 +++ export CCL_ROOT +++ '[' -z '' ']' +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ ccl_configuration=cpu_gpu_dpcpp +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$ccl_configuration" in +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ export CCL_CONFIGURATION ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=2 ++ for arg in "$@" +++ expr clck=latest : '\(.*\)=.*' ++ arg_base=clck +++ expr clck=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/clck/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/clck/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ echo ':: clck -- latest' :: clck -- latest ++ . /opt/intel/oneapi/clck/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/clck/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/clck/latest/env/vars.sh +++ SCRIPT_NAME=vars.sh ++++ get_script_path /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script=/opt/intel/oneapi/clck/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/clck/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/clck/latest/env +++++ cd /opt/intel/oneapi/clck/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/clck/2021.6.0/env ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/env +++ SCRIPT_PATH=/opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env +++ CLCK_ROOT=/opt/intel/oneapi/clck/2021.6.0 +++ export CLCK_ROOT +++ dir=intel64 ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/bin/intel64 /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/bin/intel64 ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/lib/intel64 /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/include '' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/include ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/include +++ CPLUS_INCLUDE_PATH=/opt/intel/oneapi/clck/2021.6.0/include +++ export CPLUS_INCLUDE_PATH ++++ prepend_path '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' '' ++++ path_to_add='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ prepend_manpath /opt/intel/oneapi/clck/2021.6.0/man '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/man ++++ path_is_now='$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=3 ++ for arg in "$@" +++ expr compiler=latest : '\(.*\)=.*' ++ arg_base=compiler +++ expr compiler=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ echo ':: compiler -- latest' :: compiler -- latest ++ . /opt/intel/oneapi/compiler/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/compiler/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script=/opt/intel/oneapi/compiler/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/compiler/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/compiler/latest/env +++++ cd /opt/intel/oneapi/compiler/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/compiler/2022.1.0/env ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env +++ component_root=/opt/intel/oneapi/compiler/2022.1.0 +++ CMPLR_ROOT=/opt/intel/oneapi/compiler/2022.1.0 +++ export CMPLR_ROOT +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ USE_INTEL_LLVM=0 +++ '[' 1 -gt 0 ']' +++ case "$1" in +++ shift +++ '[' 0 -gt 0 ']' +++ '[' intel64 = ia32 ']' +++ unset INTEL_TARGET_ARCH_IA32 ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' 0 = 1 ']' +++ '[' intel64 = ia32 ']' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin ++++ path_is_now='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' intel64 = ia32 ']' +++ '[' -n '' ']' +++ '[' -f /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ']' +++ FPGA_VARS_DIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga +++ export FPGA_VARS_DIR +++ FPGA_VARS_ARGS= +++ export FPGA_VARS_ARGS +++ . /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ++++ SCRIPTDIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ icdadd libalteracl.so ++++ '[' -z '' ']' ++++ export OCL_ICD_FILENAMES=libalteracl.so ++++ OCL_ICD_FILENAMES=libalteracl.so ++++ icdadd libintelocl_emu.so ++++ '[' -z x ']' ++++ case ":$OCL_ICD_FILENAMES:" in ++++ export OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ export ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ export INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ export PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ uname -m ++++ ARCH=x86_64 ++++ arch_type= ++++ case $ARCH in ++++ arch_type=linux64 ++++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z libintelocl_emu.so:libalteracl.so ']' +++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so +++ '[' -n '' ']' +++ export OCL_ICD_FILENAMES ++++ prepend_manpath /opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export NLSPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=4 ++ for arg in "$@" +++ expr dal=latest : '\(.*\)=.*' ++ arg_base=dal +++ expr dal=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dal/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dal/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ echo ':: dal -- latest' :: dal -- latest ++ . /opt/intel/oneapi/dal/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dal/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dal/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dal/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dal/latest/env +++++ cd /opt/intel/oneapi/dal/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dal/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dal/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env +++ component_root=/opt/intel/oneapi/dal/2021.6.0 +++ __daal_tmp_dir='<INSTALLDIR>' +++ __daal_tmp_dir='<INSTALLDIR>/dal' +++ '[' '!' -d '<INSTALLDIR>/dal' ']' +++ __daal_tmp_dir=/opt/intel/oneapi/dal/2021.6.0 +++ export DAL_MAJOR_BINARY=1 +++ DAL_MAJOR_BINARY=1 +++ export DAL_MINOR_BINARY=1 +++ DAL_MINOR_BINARY=1 +++ export DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++ temp_var=5 ++ for arg in "$@" +++ expr debugger=latest : '\(.*\)=.*' ++ arg_base=debugger +++ expr debugger=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ echo ':: debugger -- latest' :: debugger -- latest ++ . /opt/intel/oneapi/debugger/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/debugger/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script=/opt/intel/oneapi/debugger/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/debugger/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/debugger/latest/env +++++ cd /opt/intel/oneapi/debugger/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/debugger/2021.6.0/env ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env +++ gdb_root=/opt/intel/oneapi/debugger/2021.6.0 +++ my_ld_path=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/dep '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/dep ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/dep +++ INTEL_PYTHONHOME=/opt/intel/oneapi/debugger/2021.6.0/dep +++ export INTEL_PYTHONHOME ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ path_is_now='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_manpath /opt/intel/oneapi/debugger/2021.6.0/documentation/man '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/man ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ INFOPATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ export INFOPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ GDB_INFO=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ export GDB_INFO ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=6 ++ for arg in "$@" +++ expr dev-utilities=latest : '\(.*\)=.*' ++ arg_base=dev-utilities +++ expr dev-utilities=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ echo ':: dev-utilities -- latest' :: dev-utilities -- latest ++ . /opt/intel/oneapi/dev-utilities/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dev-utilities/latest/env +++++ cd /opt/intel/oneapi/dev-utilities/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ component_root=/opt/intel/oneapi/dev-utilities/2021.6.0 ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/bin /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/include /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=7 ++ for arg in "$@" +++ expr dnnl=latest : '\(.*\)=.*' ++ arg_base=dnnl +++ expr dnnl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ echo ':: dnnl -- latest' :: dnnl -- latest ++ . /opt/intel/oneapi/dnnl/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= +++ __dnnl_known_configurations='cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ cut '-d ' -f1 +++ __dnnl_def_configuration=cpu_dpcpp_gpu_dpcpp ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dnnl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dnnl/latest/env +++++ cd /opt/intel/oneapi/dnnl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ echo /opt/intel/oneapi/dnnl/2022.1.0/env +++ __dnnl_this_dir_path=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ dnnl_check_local_env +++++ basename -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ __dnnl_this_dir_name=env +++++ dnnl_match_configuration env +++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' +++++ tr ' ' '\n' +++++ read -r item +++++ '[' env = cpu_dpcpp_gpu_dpcpp ']' +++++ read -r item +++++ '[' env = cpu_gomp ']' +++++ read -r item +++++ '[' env = cpu_iomp ']' +++++ read -r item +++++ '[' env = cpu_tbb ']' +++++ read -r item +++++ echo '' ++++ echo '' +++ '[' -n '' ']' +++ dnnl_env_vars_main SETVARS_CALL=1 +++ __dnnl_configuration= +++ for param in "$@" +++ __tmp_dnnl_configuration=SETVARS_CALL=1 +++ '[' SETVARS_CALL=1 = --dnnl-configuration=SETVARS_CALL=1 ']' +++ '[' -n '' ']' +++ __dnnl_configuration=cpu_dpcpp_gpu_dpcpp ++++ get_script_path /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ '[' -L /opt/intel/oneapi/dnnl/2022.1.0/env ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++++ cd /opt/intel/oneapi/dnnl/2022.1.0 +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 ++++ echo /opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_base_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_set_env_vars /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ export DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ '[' -n '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ export LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ export CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' -n /opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ unset __dnnl_known_configurations +++ unset __dnnl_def_configuration +++ unset __dnnl_this_dir_path +++ unset __dnnl_this_dir_name +++ unset __dnnl_configuration ++ temp_var=8 ++ for arg in "$@" +++ expr dpcpp-ct=latest : '\(.*\)=.*' ++ arg_base=dpcpp-ct +++ expr dpcpp-ct=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ echo ':: dpcpp-ct -- latest' :: dpcpp-ct -- latest ++ . /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/latest/env +++++ cd /opt/intel/oneapi/dpcpp-ct/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ component_root=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ DPCT_BUNDLE_ROOT=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ export DPCT_BUNDLE_ROOT ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/include /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=9 ++ for arg in "$@" +++ expr dpl=latest : '\(.*\)=.*' ++ arg_base=dpl +++ expr dpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ echo ':: dpl -- latest' :: dpl -- latest ++ . /opt/intel/oneapi/dpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ rreadlink /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ target=/opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname= +++++ targetDir= +++++ CDPATH= +++++ '[' -n '' ']' +++++ : +++++ '[' -L /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ '[' -e /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++++++ command dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ command cd /opt/intel/oneapi/dpl/latest/env ++++++ command basename -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname=vars.sh +++++ '[' vars.sh = / ']' +++++ '[' -L vars.sh ']' +++++ break ++++++ command pwd -P +++++ targetDir=/opt/intel/oneapi/dpl/2021.7.0/env +++++ '[' vars.sh = . ']' +++++ '[' vars.sh = .. ']' +++++ command printf '%s\n' /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++ _onedpl_scrip_path=/opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env +++ DPL_ROOT=/opt/intel/oneapi/dpl/2021.7.0 +++ export DPL_ROOT ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/linux/include /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/linux/include ++++ path_is_now=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=10 ++ for arg in "$@" +++ expr inspector=latest : '\(.*\)=.*' ++ arg_base=inspector +++ expr inspector=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ echo ':: inspector -- latest' :: inspector -- latest ++ . /opt/intel/oneapi/inspector/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/inspector/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/inspector/latest/env +++++ cd /opt/intel/oneapi/inspector/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0/env +++++ dirname /opt/intel/oneapi/inspector/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0 ++++ echo /opt/intel/oneapi/inspector/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 +++ INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++ temp_var=11 ++ for arg in "$@" +++ expr intelpython=latest : '\(.*\)=.*' ++ arg_base=intelpython +++ expr intelpython=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ echo ':: intelpython -- latest' :: intelpython -- latest ++ . /opt/intel/oneapi/intelpython/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/intelpython/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/intelpython/latest/env +++++ cd /opt/intel/oneapi/intelpython/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/intelpython/python3.9/env ++++ printf %s /opt/intel/oneapi/intelpython/python3.9/env +++ SCRIPTPATH=/opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env +++ ROOTPATH=/opt/intel/oneapi/intelpython/python3.9 ++++ basename /opt/intel/oneapi/intelpython/python3.9 +++ VERSION=python3.9 ++++ dirname /opt/intel/oneapi/intelpython/python3.9 +++ PARENTDIR=/opt/intel/oneapi/intelpython ++++ basename /opt/intel/oneapi/intelpython +++ CURRENTENV=intelpython +++ MAINENV=intelpython +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.10 ']' +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.9 ']' +++ PYVER=python3.9 +++ POTENTIAL_ACTIVATE_PATH=/opt/intel/oneapi/intelpython/python3.9/../../intelpython/python3.9/bin/activate +++ '[' /opt/intel/oneapi/intelpython/latest/env/vars.sh = intelpython/latest/env/vars.sh ']' +++ export OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ '[' intelpython '!=' intelpython ']' +++ '[' -n 1 ']' +++ '[' -n '' ']' +++ BACKUP_SETVARS_CALL_PARAMETERS=SETVARS_CALL=1 +++ SANITIZED_SETVARS_CALL_PARAMETERS= +++ set -- '' ++++ env ++++ grep -q PS1 +++ '[' ']' +++ PS1_IS_SET=0 +++ BACKUP_PROMPT= +++ . /opt/intel/oneapi/intelpython/python3.9/bin/activate ++++ _CONDA_ROOT=/opt/intel/oneapi/intelpython/latest ++++ '[' -n '' ']' ++++ . /opt/intel/oneapi/intelpython/latest/etc/profile.d/conda.sh +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ '[' -z '' ']' +++++ export CONDA_SHLVL=0 +++++ CONDA_SHLVL=0 +++++ '[' -n '' ']' +++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ '[' -z '' ']' +++++ PS1= ++++ conda activate '' ++++ local cmd=activate ++++ case "$cmd" in ++++ __conda_activate activate '' ++++ '[' -n '' ']' ++++ local ask_conda +++++ PS1= +++++ __conda_exe shell.posix activate '' +++++ __add_sys_prefix_to_path +++++ '[' -n '' ']' ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda +++++ SYSP=/opt/intel/oneapi/intelpython/latest/bin ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ SYSP=/opt/intel/oneapi/intelpython/latest +++++ '[' -n '' ']' +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ /opt/intel/oneapi/intelpython/latest/bin/conda shell.posix activate '' ++++ ask_conda='PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' ++++ eval 'PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' +++++ PS1='(intelpython-python3.9) ' +++++ export PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ export CONDA_SHLVL=1 +++++ CONDA_SHLVL=1 +++++ export CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ export 'CONDA_PROMPT_MODIFIER=(intelpython-python3.9) ' +++++ CONDA_PROMPT_MODIFIER='(intelpython-python3.9) ' +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh ++++++ '[' 1 '!=' 1 ']' +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh ++++++ '[' libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so = '' ']' ++++ __conda_hashr ++++ '[' -n '' ']' ++++ '[' -n '' ']' ++++ hash -r +++ '[' 0 -eq 1 ']' +++ PS1= +++ unset BACKUP_PROMPT +++ set -- SETVARS_CALL=1 +++ unset BACKUP_SETVARS_CALL_PARAMETERS +++ unset SANITIZED_SETVARS_CALL_PARAMETERS +++ unset OVERWRITE_CONDA_DEFAULT_ENV +++ unset SCRIPTPATH +++ unset ROOTPATH +++ unset VERSION +++ unset CURRENTENV +++ unset PARENTDIR +++ unset MAINENV ++ temp_var=12 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=13 ++ for arg in "$@" +++ expr ippcp=latest : '\(.*\)=.*' ++ arg_base=ippcp +++ expr ippcp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ echo ':: ippcp -- latest' :: ippcp -- latest ++ . /opt/intel/oneapi/ippcp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ippcp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ippcp/latest/env +++++ cd /opt/intel/oneapi/ippcp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ echo /opt/intel/oneapi/ippcp/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env +++ component_root=/opt/intel/oneapi/ippcp/2021.6.0 +++ IPPCRYPTOROOT=/opt/intel/oneapi/ippcp/2021.6.0 +++ export IPPCRYPTOROOT +++ __ippcp_tmp_target_arch=intel64 +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPPCP_TARGET_ARCH=intel64 +++ IPPCP_TARGET_ARCH=intel64 ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/include /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=14 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=15 ++ for arg in "$@" +++ expr itac=latest : '\(.*\)=.*' ++ arg_base=itac +++ expr itac=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/itac/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/itac/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ echo ':: itac -- latest' :: itac -- latest ++ . /opt/intel/oneapi/itac/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/itac/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++++ prepend_path /opt/intel/licenses:/home/jenkins/intel/licenses '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_to_add=/opt/intel/licenses:/home/jenkins/intel/licenses ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ']' ++++ printf %s '/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ get_script_path /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script=/opt/intel/oneapi/itac/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/itac/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/itac/latest/env +++++ cd /opt/intel/oneapi/itac/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/itac/2021.6.0/env ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env +++ component_root=/opt/intel/oneapi/itac/2021.6.0 +++ VT_ROOT=/opt/intel/oneapi/itac/2021.6.0 +++ export VT_ROOT +++ VT_MPI=impi4 +++ VT_LIB_DIR=/opt/intel/oneapi/itac/2021.6.0/lib +++ VT_SLIB_DIR=/opt/intel/oneapi/itac/2021.6.0/slib +++ VT_ADD_LIBS='-ldwarf -lelf -lvtunwind -lm -lpthread' +++ export VT_MPI VT_LIB_DIR VT_SLIB_DIR VT_ADD_LIBS ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/slib '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/slib ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/bin /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_manpath /opt/intel/oneapi/itac/2021.6.0/man '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/man ++++ path_is_now='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=16 ++ for arg in "$@" +++ expr mkl=latest : '\(.*\)=.*' ++ arg_base=mkl +++ expr mkl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ echo ':: mkl -- latest' :: mkl -- latest ++ . /opt/intel/oneapi/mkl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mkl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++ my_script_name=vars.sh ++++ get_script_path /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mkl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mkl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mkl/latest/env +++++ cd /opt/intel/oneapi/mkl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mkl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/mkl/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env +++ MKLROOT=/opt/intel/oneapi/mkl/2022.1.0 +++ export MKLROOT +++ __mkl_tmp_SCRIPT_NAME=vars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_TARGET_ARCH=intel64 +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_help= +++ '[' -z SETVARS_CALL=1 ']' +++ '[' -n SETVARS_CALL=1 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ '[' SETVARS_CALL=1 = lp64 ']' +++ '[' SETVARS_CALL=1 = ilp64 ']' +++ '[' SETVARS_CALL=1 = mod ']' +++ '[' SETVARS_CALL=1 = verbose ']' +++ '[' SETVARS_CALL=1 = help ']' +++ shift +++ '[' -n '' ']' +++ '[' -z '' ']' +++ __mkl_lib_dir=/opt/intel/oneapi/mkl/2022.1.0/lib +++ __cpath=/opt/intel/oneapi/mkl/2022.1.0/include +++ __mkl_bin_dir=/opt/intel/oneapi/mkl/2022.1.0/bin +++ __ld_library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __path=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64 +++ __nlspath=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' '' = verbose ']' ++ temp_var=17 ++ for arg in "$@" +++ expr mpi=latest : '\(.*\)=.*' ++ arg_base=mpi +++ expr mpi=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ echo ':: mpi -- latest' :: mpi -- latest ++ . /opt/intel/oneapi/mpi/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mpi/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mpi/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mpi/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mpi/latest/env +++++ cd /opt/intel/oneapi/mpi/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mpi/2021.6.0/env ++++ printf %s /opt/intel/oneapi/mpi/2021.6.0/env +++ MPIVARS_DIR=/opt/intel/oneapi/mpi/2021.6.0/env ++++ cd /opt/intel/oneapi/mpi/2021.6.0/env/.. ++++ pwd +++ I_MPI_ROOT=/opt/intel/oneapi/mpi/2021.6.0 +++ export I_MPI_ROOT +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH +++ PLATFORM= +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' -z /opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar ']' +++ CLASSPATH=/opt/intel/oneapi/mpi/2021.6.0//lib/mpi.jar:/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '' ']' +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ CPATH=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH +++ export 'MANPATH=/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ MANPATH='/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib/prov:/usr/lib64/libfabric +++ export FI_PROVIDER_PATH ++ temp_var=18 ++ for arg in "$@" +++ expr tbb=latest : '\(.*\)=.*' ++ arg_base=tbb +++ expr tbb=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ echo ':: tbb -- latest' :: tbb -- latest ++ . /opt/intel/oneapi/tbb/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/tbb/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/tbb/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/tbb/latest/env +++++ cd /opt/intel/oneapi/tbb/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/tbb/2021.6.0/env ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env +++ TBBROOT=/opt/intel/oneapi/tbb/2021.6.0/env/.. +++ TBB_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ for arg in "$@" +++ case "$arg" in +++ TBB_LIB_NAME=libtbb.so.12 +++ TBB_LIB_DIR=intel64/gcc4.8 +++ '[' -e /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8/libtbb.so.12 ']' +++ export TBBROOT ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../include /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../include ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/.. /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/.. ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=19 ++ for arg in "$@" +++ expr vpl=latest : '\(.*\)=.*' ++ arg_base=vpl +++ expr vpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ echo ':: vpl -- latest' :: vpl -- latest ++ . /opt/intel/oneapi/vpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e872cca2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 287982 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/vpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vpl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vpl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vpl/latest/env +++++ cd /opt/intel/oneapi/vpl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/vpl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/env +++ script_path=/opt/intel/oneapi/vpl/2022.1.0/env +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ cd /opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ pwd +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0 +++ vpl_include=/opt/intel/oneapi/vpl/2022.1.0/include +++ vpl_lib=/opt/intel/oneapi/vpl/2022.1.0/lib +++ vpl_bin=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/include /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/bin /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0 /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0 ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=20 ++ for arg in "$@" +++ expr vtune=latest : '\(.*\)=.*' ++ arg_base=vtune +++ expr vtune=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ echo ':: vtune -- latest' :: vtune -- latest ++ . /opt/intel/oneapi/vtune/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vtune/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vtune/latest/env +++++ cd /opt/intel/oneapi/vtune/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0/env +++++ dirname /opt/intel/oneapi/vtune/2022.3.0/env ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0 ++++ echo /opt/intel/oneapi/vtune/2022.3.0 +++ PRODUCT_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ export VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++ temp_var=21 ++ '[' 21 -eq 0 ']' ++ echo ':: oneAPI environment initialized ::' :: oneAPI environment initialized :: ++ echo ' ' ++ '[' 0 -ne 0 ']' ++ eval set -- ''\''--force'\'' \ ' +++ set -- --force ++ prep_for_exit 0 ++ script_return_code=0 ++ unset -v SETVARS_CALL ++ unset -v SETVARS_ARGS ++ unset -v SETVARS_VARS_PATH ++ '[' 0 = '' ']' ++ '[' 0 -eq 0 ']' ++ SETVARS_COMPLETED=1 ++ export SETVARS_COMPLETED ++ return 0 ++ return + bash -c 'export e3smSource=/home/jenkins/workspace/branch_e3sm_test; csh nightly_test/nightly_e3sm_scm_DYCOMSrf01.csh' Compset longname is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_e3sm_test/cime_config/allactive/config_pesall.xml Could not find machine match for 'nelson.localdomain' or 'nelson' Machine is nelson Pes setting: grid is a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Pes setting: compset is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 16, 'NTASKS_LND': 16, 'NTASKS_ROF': 16, 'NTASKS_ICE': 16, 'NTASKS_OCN': 16, 'NTASKS_GLC': 16, 'NTASKS_WAV': 16, 'NTASKS_CPL': 16} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Components in compset are: ['eam', 'elm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp'] No charge_account info available, using value from PROJECT e3sm model version found: 4a895c8ce1 Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: Unknown Job Queue specified use --force to set /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/env_mach_specific.xml already exists, delete to replace Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup 2023-06-29 18:20:44 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-06-29 18:20:44 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-06-29 18:20:44 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-06-29 18:20:44 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-06-29 18:20:44 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-06-29 18:20:44 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-06-29 18:20:44 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-06-29 18:20:44 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-06-29 18:20:44 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-06-29 18:20:44 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts sharedlib_only is False model_only is False Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Generating component namelists as part of build 2023-06-29 18:20:47 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-06-29 18:20:47 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-06-29 18:20:47 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-06-29 18:20:47 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-06-29 18:20:47 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-06-29 18:20:47 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-06-29 18:20:47 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-06-29 18:20:47 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-06-29 18:20:47 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-06-29 18:20:47 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Building gptl with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gptl.bldlog.230629-182047 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/mct.bldlog.230629-182047 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/pio.bldlog.230629-182047 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/csm_share.bldlog.230629-182047 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings Building kokkos with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/kokkos.bldlog.230629-182047 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.kokkos Configuring full e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.230629-182047 Calling cmake directly, see top of log file for specific call Building e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.230629-182047 Calling make, see top of log file for specific call Total build time: 393.615352 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-06-29 18:27:21 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-06-29 18:27:21 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-06-29 18:27:21 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-06-29 18:27:21 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-06-29 18:27:21 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-06-29 18:27:21 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-06-29 18:27:21 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-06-29 18:27:21 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-06-29 18:27:21 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-06-29 18:27:21 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Checking that inputdata is available as part of case submission Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/elm.input_data_list' Model elm no file specified for finidat Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/eam.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2023-06-29 18:27:22 CASE.RUN BEGINS HERE 2023-06-29 18:27:22 RUN_MODEL BEGINS HERE 2023-06-29 18:27:22 PRE_RUN_CHECK BEGINS HERE Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-06-29 18:27:22 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts 2023-06-29 18:27:22 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-06-29 18:27:22 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-06-29 18:27:22 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-06-29 18:27:22 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-06-29 18:27:22 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-06-29 18:27:22 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-06-29 18:27:22 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-06-29 18:27:22 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-06-29 18:27:22 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-06-29 18:27:22 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml 2023-06-29 18:27:23 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2023-06-29 18:27:23 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe >> e3sm.log.$LID 2>&1 2023-06-29 18:27:23 SAVE_PRERUN_PROVENANCE BEGINS HERE 2023-06-29 18:27:23 SAVE_PRERUN_PROVENANCE HAS FINISHED 2023-06-29 18:27:23 MODEL EXECUTION BEGINS HERE 2023-06-29 18:27:24 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/run/e3sm.log.230629-182722 Submitted job case.run with id None DYCOMSrf01 was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run RICO) [Pipeline] sh + source /opt/intel/oneapi/setvars.sh --force ++ script_name=setvars.sh ++ config_file= ++ config_array= ++ component_array= ++ warning_tally=0 ++ posix_nl=' ' +++ save_args --force +++ for arg in "$@" +++ printf '%s\n' --force +++ sed -e 's/'\''/'\''\\'\'''\''/g' -e '1s/^/'\''/' -e '$s/$/'\'' \\/' +++ echo ' ' ++ script_args=''\''--force'\'' \ ' ++ _setvars_this_script_name=setvars.sh +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++ '[' setvars.sh = script.sh ']' ++ sourcer= ++ sourced_nm= +++ ps -p 405911 -o comm= ++ sourced_sh=bash +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++ proc_name=script.sh ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n '5.1.4(1)-release' ']' +++ printf '%s: %s' script.sh 'BASH_VERSION = 5.1.4(1)-release' ++ sourcer='script.sh: BASH_VERSION = 5.1.4(1)-release' ++ return 0 ++ sourced_nm=/opt/intel/oneapi/setvars.sh ++ '[' '' = /opt/intel/oneapi/setvars.sh ']' +++ get_script_path /opt/intel/oneapi/setvars.sh +++ script=/opt/intel/oneapi/setvars.sh +++ '[' -L /opt/intel/oneapi/setvars.sh ']' ++++ command dirname -- /opt/intel/oneapi/setvars.sh +++ script_dir=/opt/intel/oneapi ++++ cd /opt/intel/oneapi ++++ command pwd -P +++ script_dir=/opt/intel/oneapi +++ printf %s /opt/intel/oneapi ++ script_root=/opt/intel/oneapi ++ help=0 ++ force=0 ++ config=0 ++ config_file= ++ list_of_args= ++ '[' -n '' ']' +++ printf '%s %s' 'args: Using "$@" for setvars.sh arguments:' --force ++ input_args='args: Using "$@" for setvars.sh arguments: --force' ++ for arg in "$@" ++ shift ++ case "$arg" in ++ force=1 ++ SETVARS_ARGS= ++ export SETVARS_ARGS ++ '[' 0 '!=' 0 ']' ++ '[' '' = 1 ']' ++ '[' 0 -eq 1 ']' ++ version_default=latest +++ awk NF +++ command ls /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ component_array='/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' ++ temp_array= +++ prep_for_eval '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ echo '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/advisor/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/2021.7.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/python3.9/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/2022.3.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/latest/env/vars.sh'\'' ' +++ set -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0 +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/latest/env ++++ dirname -- /opt/intel/oneapi/advisor/latest +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0 +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/latest/env ++++ dirname -- /opt/intel/oneapi/ccl/latest +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0 +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/latest/env ++++ dirname -- /opt/intel/oneapi/clck/latest +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/latest/env ++++ dirname -- /opt/intel/oneapi/compiler/latest +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0 +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/latest/env ++++ dirname -- /opt/intel/oneapi/dal/latest +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0 +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/latest/env ++++ dirname -- /opt/intel/oneapi/debugger/latest +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0 +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/latest +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0 +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/latest/env ++++ dirname -- /opt/intel/oneapi/dnnl/latest +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0 +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/latest/env ++++ dirname -- /opt/intel/oneapi/dpl/latest +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0 +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/latest/env ++++ dirname -- /opt/intel/oneapi/inspector/latest +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/latest/env ++++ dirname -- /opt/intel/oneapi/intelpython/latest +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9 +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0 +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0 +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/latest/env ++++ dirname -- /opt/intel/oneapi/ippcp/latest +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/latest/env ++++ dirname -- /opt/intel/oneapi/ipp/latest +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0 +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/latest/env ++++ dirname -- /opt/intel/oneapi/itac/latest +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0 +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/latest/env ++++ dirname -- /opt/intel/oneapi/mkl/latest +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0 +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/latest/env ++++ dirname -- /opt/intel/oneapi/mpi/latest +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0 +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/latest/env ++++ dirname -- /opt/intel/oneapi/tbb/latest +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0 +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/latest/env ++++ dirname -- /opt/intel/oneapi/vpl/latest +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env ++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0 +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/latest/env ++++ dirname -- /opt/intel/oneapi/vtune/latest +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' ++ component_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ printf '%s\n' 'advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ uniq ++ component_array='advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ printf '%s\n' 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ wc -l ++ temp_var=21 ++ '[' 21 -le 0 ']' ++ '[' 0 = 1 ']' +++ prep_for_eval 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ echo 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor'\'' \ '\''ccl'\'' \ '\''clck'\'' \ '\''compiler'\'' \ '\''dal'\'' \ '\''debugger'\'' \ '\''dev-utilities'\'' \ '\''dnnl'\'' \ '\''dpcpp-ct'\'' \ '\''dpl'\'' \ '\''inspector'\'' \ '\''intelpython'\'' \ '\''ipp'\'' \ '\''ippcp'\'' \ '\''ipp'\'' \ '\''itac'\'' \ '\''mkl'\'' \ '\''mpi'\'' \ '\''tbb'\'' \ '\''vpl'\'' \ '\''vtune'\'' ' +++ set -- advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune ++ temp_array= ++ for arg in "$@" ++ arg=advisor=latest ++ temp_array='advisor=latest ' ++ for arg in "$@" ++ arg=ccl=latest ++ temp_array='advisor=latest ccl=latest ' ++ for arg in "$@" ++ arg=clck=latest ++ temp_array='advisor=latest ccl=latest clck=latest ' ++ for arg in "$@" ++ arg=compiler=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest ' ++ for arg in "$@" ++ arg=dal=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest ' ++ for arg in "$@" ++ arg=debugger=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest ' ++ for arg in "$@" ++ arg=dev-utilities=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest ' ++ for arg in "$@" ++ arg=dnnl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest ' ++ for arg in "$@" ++ arg=dpcpp-ct=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest ' ++ for arg in "$@" ++ arg=dpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest ' ++ for arg in "$@" ++ arg=inspector=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ' ++ for arg in "$@" ++ arg=intelpython=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ' ++ for arg in "$@" ++ arg=ippcp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest ' ++ for arg in "$@" ++ arg=itac=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest ' ++ for arg in "$@" ++ arg=mkl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest ' ++ for arg in "$@" ++ arg=mpi=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest ' ++ for arg in "$@" ++ arg=tbb=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest ' ++ for arg in "$@" ++ arg=vpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest ' ++ for arg in "$@" ++ arg=vtune=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ '[' 0 = 1 ']' +++ printf '%s\n' 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' +++ awk NF ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' ++ echo ' ' ++ echo ':: initializing oneAPI environment ...' :: initializing oneAPI environment ... ++ echo ' script.sh: BASH_VERSION = 5.1.4(1)-release' script.sh: BASH_VERSION = 5.1.4(1)-release ++ echo ' args: Using "$@" for setvars.sh arguments: --force' args: Using "$@" for setvars.sh arguments: --force ++ ONEAPI_ROOT=/opt/intel/oneapi ++ export ONEAPI_ROOT ++ SETVARS_CALL=1 ++ export SETVARS_CALL ++ temp_var=0 +++ prep_for_eval 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ echo 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor=latest'\'' \ '\''ccl=latest'\'' \ '\''clck=latest'\'' \ '\''compiler=latest'\'' \ '\''dal=latest'\'' \ '\''debugger=latest'\'' \ '\''dev-utilities=latest'\'' \ '\''dnnl=latest'\'' \ '\''dpcpp-ct=latest'\'' \ '\''dpl=latest'\'' \ '\''inspector=latest'\'' \ '\''intelpython=latest'\'' \ '\''ipp=latest'\'' \ '\''ippcp=latest'\'' \ '\''ipp=latest'\'' \ '\''itac=latest'\'' \ '\''mkl=latest'\'' \ '\''mpi=latest'\'' \ '\''tbb=latest'\'' \ '\''vpl=latest'\'' \ '\''vtune=latest'\'' ' +++ set -- advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ++ for arg in "$@" +++ expr advisor=latest : '\(.*\)=.*' ++ arg_base=advisor +++ expr advisor=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ echo ':: advisor -- latest' :: advisor -- latest ++ . /opt/intel/oneapi/advisor/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/advisor/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/advisor/latest/env +++++ cd /opt/intel/oneapi/advisor/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0/env +++++ dirname /opt/intel/oneapi/advisor/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0 ++++ echo /opt/intel/oneapi/advisor/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/advisor/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ export PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ export APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels +++ APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels ++ temp_var=1 ++ for arg in "$@" +++ expr ccl=latest : '\(.*\)=.*' ++ arg_base=ccl +++ expr ccl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ echo ':: ccl -- latest' :: ccl -- latest ++ . /opt/intel/oneapi/ccl/latest/env/vars.sh SETVARS_CALL=1 +++ DEFAULT_CONFIGURATION=cpu_gpu_dpcpp +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ccl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ccl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ccl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ccl/latest/env +++++ cd /opt/intel/oneapi/ccl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ccl/2021.6.0/env ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/env +++ WORK_DIR=/opt/intel/oneapi/ccl/2021.6.0/env ++++ cd /opt/intel/oneapi/ccl/2021.6.0/env/../ ++++ pwd -P +++ CCL_ROOT=/opt/intel/oneapi/ccl/2021.6.0 +++ export CCL_ROOT +++ '[' -z '' ']' +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ ccl_configuration=cpu_gpu_dpcpp +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$ccl_configuration" in +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ export CCL_CONFIGURATION ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=2 ++ for arg in "$@" +++ expr clck=latest : '\(.*\)=.*' ++ arg_base=clck +++ expr clck=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/clck/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/clck/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ echo ':: clck -- latest' :: clck -- latest ++ . /opt/intel/oneapi/clck/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/clck/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/clck/latest/env/vars.sh +++ SCRIPT_NAME=vars.sh ++++ get_script_path /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script=/opt/intel/oneapi/clck/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/clck/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/clck/latest/env +++++ cd /opt/intel/oneapi/clck/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/clck/2021.6.0/env ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/env +++ SCRIPT_PATH=/opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env +++ CLCK_ROOT=/opt/intel/oneapi/clck/2021.6.0 +++ export CLCK_ROOT +++ dir=intel64 ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/bin/intel64 /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/bin/intel64 ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/lib/intel64 /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/include '' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/include ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/include +++ CPLUS_INCLUDE_PATH=/opt/intel/oneapi/clck/2021.6.0/include +++ export CPLUS_INCLUDE_PATH ++++ prepend_path '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' '' ++++ path_to_add='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ prepend_manpath /opt/intel/oneapi/clck/2021.6.0/man '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/man ++++ path_is_now='$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=3 ++ for arg in "$@" +++ expr compiler=latest : '\(.*\)=.*' ++ arg_base=compiler +++ expr compiler=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ echo ':: compiler -- latest' :: compiler -- latest ++ . /opt/intel/oneapi/compiler/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/compiler/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script=/opt/intel/oneapi/compiler/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/compiler/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/compiler/latest/env +++++ cd /opt/intel/oneapi/compiler/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/compiler/2022.1.0/env ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env +++ component_root=/opt/intel/oneapi/compiler/2022.1.0 +++ CMPLR_ROOT=/opt/intel/oneapi/compiler/2022.1.0 +++ export CMPLR_ROOT +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ USE_INTEL_LLVM=0 +++ '[' 1 -gt 0 ']' +++ case "$1" in +++ shift +++ '[' 0 -gt 0 ']' +++ '[' intel64 = ia32 ']' +++ unset INTEL_TARGET_ARCH_IA32 ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' 0 = 1 ']' +++ '[' intel64 = ia32 ']' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin ++++ path_is_now='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' intel64 = ia32 ']' +++ '[' -n '' ']' +++ '[' -f /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ']' +++ FPGA_VARS_DIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga +++ export FPGA_VARS_DIR +++ FPGA_VARS_ARGS= +++ export FPGA_VARS_ARGS +++ . /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ++++ SCRIPTDIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ icdadd libalteracl.so ++++ '[' -z '' ']' ++++ export OCL_ICD_FILENAMES=libalteracl.so ++++ OCL_ICD_FILENAMES=libalteracl.so ++++ icdadd libintelocl_emu.so ++++ '[' -z x ']' ++++ case ":$OCL_ICD_FILENAMES:" in ++++ export OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ export ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ export INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ export PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ uname -m ++++ ARCH=x86_64 ++++ arch_type= ++++ case $ARCH in ++++ arch_type=linux64 ++++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z libintelocl_emu.so:libalteracl.so ']' +++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so +++ '[' -n '' ']' +++ export OCL_ICD_FILENAMES ++++ prepend_manpath /opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export NLSPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=4 ++ for arg in "$@" +++ expr dal=latest : '\(.*\)=.*' ++ arg_base=dal +++ expr dal=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dal/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dal/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ echo ':: dal -- latest' :: dal -- latest ++ . /opt/intel/oneapi/dal/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dal/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dal/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dal/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dal/latest/env +++++ cd /opt/intel/oneapi/dal/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dal/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dal/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env +++ component_root=/opt/intel/oneapi/dal/2021.6.0 +++ __daal_tmp_dir='<INSTALLDIR>' +++ __daal_tmp_dir='<INSTALLDIR>/dal' +++ '[' '!' -d '<INSTALLDIR>/dal' ']' +++ __daal_tmp_dir=/opt/intel/oneapi/dal/2021.6.0 +++ export DAL_MAJOR_BINARY=1 +++ DAL_MAJOR_BINARY=1 +++ export DAL_MINOR_BINARY=1 +++ DAL_MINOR_BINARY=1 +++ export DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++ temp_var=5 ++ for arg in "$@" +++ expr debugger=latest : '\(.*\)=.*' ++ arg_base=debugger +++ expr debugger=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ echo ':: debugger -- latest' :: debugger -- latest ++ . /opt/intel/oneapi/debugger/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/debugger/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script=/opt/intel/oneapi/debugger/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/debugger/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/debugger/latest/env +++++ cd /opt/intel/oneapi/debugger/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/debugger/2021.6.0/env ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env +++ gdb_root=/opt/intel/oneapi/debugger/2021.6.0 +++ my_ld_path=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/dep '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/dep ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/dep +++ INTEL_PYTHONHOME=/opt/intel/oneapi/debugger/2021.6.0/dep +++ export INTEL_PYTHONHOME ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ path_is_now='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_manpath /opt/intel/oneapi/debugger/2021.6.0/documentation/man '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/man ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ INFOPATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ export INFOPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ GDB_INFO=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ export GDB_INFO ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=6 ++ for arg in "$@" +++ expr dev-utilities=latest : '\(.*\)=.*' ++ arg_base=dev-utilities +++ expr dev-utilities=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ echo ':: dev-utilities -- latest' :: dev-utilities -- latest ++ . /opt/intel/oneapi/dev-utilities/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dev-utilities/latest/env +++++ cd /opt/intel/oneapi/dev-utilities/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ component_root=/opt/intel/oneapi/dev-utilities/2021.6.0 ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/bin /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/include /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=7 ++ for arg in "$@" +++ expr dnnl=latest : '\(.*\)=.*' ++ arg_base=dnnl +++ expr dnnl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ echo ':: dnnl -- latest' :: dnnl -- latest ++ . /opt/intel/oneapi/dnnl/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= +++ __dnnl_known_configurations='cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ cut '-d ' -f1 +++ __dnnl_def_configuration=cpu_dpcpp_gpu_dpcpp ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dnnl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dnnl/latest/env +++++ cd /opt/intel/oneapi/dnnl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ echo /opt/intel/oneapi/dnnl/2022.1.0/env +++ __dnnl_this_dir_path=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ dnnl_check_local_env +++++ basename -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ __dnnl_this_dir_name=env +++++ dnnl_match_configuration env +++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' +++++ tr ' ' '\n' +++++ read -r item +++++ '[' env = cpu_dpcpp_gpu_dpcpp ']' +++++ read -r item +++++ '[' env = cpu_gomp ']' +++++ read -r item +++++ '[' env = cpu_iomp ']' +++++ read -r item +++++ '[' env = cpu_tbb ']' +++++ read -r item +++++ echo '' ++++ echo '' +++ '[' -n '' ']' +++ dnnl_env_vars_main SETVARS_CALL=1 +++ __dnnl_configuration= +++ for param in "$@" +++ __tmp_dnnl_configuration=SETVARS_CALL=1 +++ '[' SETVARS_CALL=1 = --dnnl-configuration=SETVARS_CALL=1 ']' +++ '[' -n '' ']' +++ __dnnl_configuration=cpu_dpcpp_gpu_dpcpp ++++ get_script_path /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ '[' -L /opt/intel/oneapi/dnnl/2022.1.0/env ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++++ cd /opt/intel/oneapi/dnnl/2022.1.0 +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 ++++ echo /opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_base_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_set_env_vars /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ export DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ '[' -n '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ export LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ export CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' -n /opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ unset __dnnl_known_configurations +++ unset __dnnl_def_configuration +++ unset __dnnl_this_dir_path +++ unset __dnnl_this_dir_name +++ unset __dnnl_configuration ++ temp_var=8 ++ for arg in "$@" +++ expr dpcpp-ct=latest : '\(.*\)=.*' ++ arg_base=dpcpp-ct +++ expr dpcpp-ct=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ echo ':: dpcpp-ct -- latest' :: dpcpp-ct -- latest ++ . /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/latest/env +++++ cd /opt/intel/oneapi/dpcpp-ct/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ component_root=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ DPCT_BUNDLE_ROOT=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ export DPCT_BUNDLE_ROOT ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/include /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=9 ++ for arg in "$@" +++ expr dpl=latest : '\(.*\)=.*' ++ arg_base=dpl +++ expr dpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ echo ':: dpl -- latest' :: dpl -- latest ++ . /opt/intel/oneapi/dpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ rreadlink /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ target=/opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname= +++++ targetDir= +++++ CDPATH= +++++ '[' -n '' ']' +++++ : +++++ '[' -L /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ '[' -e /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++++++ command dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ command cd /opt/intel/oneapi/dpl/latest/env ++++++ command basename -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname=vars.sh +++++ '[' vars.sh = / ']' +++++ '[' -L vars.sh ']' +++++ break ++++++ command pwd -P +++++ targetDir=/opt/intel/oneapi/dpl/2021.7.0/env +++++ '[' vars.sh = . ']' +++++ '[' vars.sh = .. ']' +++++ command printf '%s\n' /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++ _onedpl_scrip_path=/opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env +++ DPL_ROOT=/opt/intel/oneapi/dpl/2021.7.0 +++ export DPL_ROOT ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/linux/include /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/linux/include ++++ path_is_now=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=10 ++ for arg in "$@" +++ expr inspector=latest : '\(.*\)=.*' ++ arg_base=inspector +++ expr inspector=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ echo ':: inspector -- latest' :: inspector -- latest ++ . /opt/intel/oneapi/inspector/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/inspector/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/inspector/latest/env +++++ cd /opt/intel/oneapi/inspector/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0/env +++++ dirname /opt/intel/oneapi/inspector/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0 ++++ echo /opt/intel/oneapi/inspector/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 +++ INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++ temp_var=11 ++ for arg in "$@" +++ expr intelpython=latest : '\(.*\)=.*' ++ arg_base=intelpython +++ expr intelpython=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ echo ':: intelpython -- latest' :: intelpython -- latest ++ . /opt/intel/oneapi/intelpython/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/intelpython/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/intelpython/latest/env +++++ cd /opt/intel/oneapi/intelpython/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/intelpython/python3.9/env ++++ printf %s /opt/intel/oneapi/intelpython/python3.9/env +++ SCRIPTPATH=/opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env +++ ROOTPATH=/opt/intel/oneapi/intelpython/python3.9 ++++ basename /opt/intel/oneapi/intelpython/python3.9 +++ VERSION=python3.9 ++++ dirname /opt/intel/oneapi/intelpython/python3.9 +++ PARENTDIR=/opt/intel/oneapi/intelpython ++++ basename /opt/intel/oneapi/intelpython +++ CURRENTENV=intelpython +++ MAINENV=intelpython +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.10 ']' +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.9 ']' +++ PYVER=python3.9 +++ POTENTIAL_ACTIVATE_PATH=/opt/intel/oneapi/intelpython/python3.9/../../intelpython/python3.9/bin/activate +++ '[' /opt/intel/oneapi/intelpython/latest/env/vars.sh = intelpython/latest/env/vars.sh ']' +++ export OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ '[' intelpython '!=' intelpython ']' +++ '[' -n 1 ']' +++ '[' -n '' ']' +++ BACKUP_SETVARS_CALL_PARAMETERS=SETVARS_CALL=1 +++ SANITIZED_SETVARS_CALL_PARAMETERS= +++ set -- '' ++++ env ++++ grep -q PS1 +++ '[' ']' +++ PS1_IS_SET=0 +++ BACKUP_PROMPT= +++ . /opt/intel/oneapi/intelpython/python3.9/bin/activate ++++ _CONDA_ROOT=/opt/intel/oneapi/intelpython/latest ++++ '[' -n '' ']' ++++ . /opt/intel/oneapi/intelpython/latest/etc/profile.d/conda.sh +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ '[' -z '' ']' +++++ export CONDA_SHLVL=0 +++++ CONDA_SHLVL=0 +++++ '[' -n '' ']' +++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ '[' -z '' ']' +++++ PS1= ++++ conda activate '' ++++ local cmd=activate ++++ case "$cmd" in ++++ __conda_activate activate '' ++++ '[' -n '' ']' ++++ local ask_conda +++++ PS1= +++++ __conda_exe shell.posix activate '' +++++ __add_sys_prefix_to_path +++++ '[' -n '' ']' ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda +++++ SYSP=/opt/intel/oneapi/intelpython/latest/bin ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ SYSP=/opt/intel/oneapi/intelpython/latest +++++ '[' -n '' ']' +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ /opt/intel/oneapi/intelpython/latest/bin/conda shell.posix activate '' ++++ ask_conda='PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' ++++ eval 'PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' +++++ PS1='(intelpython-python3.9) ' +++++ export PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ export CONDA_SHLVL=1 +++++ CONDA_SHLVL=1 +++++ export CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ export 'CONDA_PROMPT_MODIFIER=(intelpython-python3.9) ' +++++ CONDA_PROMPT_MODIFIER='(intelpython-python3.9) ' +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh ++++++ '[' 1 '!=' 1 ']' +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh ++++++ '[' libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so = '' ']' ++++ __conda_hashr ++++ '[' -n '' ']' ++++ '[' -n '' ']' ++++ hash -r +++ '[' 0 -eq 1 ']' +++ PS1= +++ unset BACKUP_PROMPT +++ set -- SETVARS_CALL=1 +++ unset BACKUP_SETVARS_CALL_PARAMETERS +++ unset SANITIZED_SETVARS_CALL_PARAMETERS +++ unset OVERWRITE_CONDA_DEFAULT_ENV +++ unset SCRIPTPATH +++ unset ROOTPATH +++ unset VERSION +++ unset CURRENTENV +++ unset PARENTDIR +++ unset MAINENV ++ temp_var=12 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=13 ++ for arg in "$@" +++ expr ippcp=latest : '\(.*\)=.*' ++ arg_base=ippcp +++ expr ippcp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ echo ':: ippcp -- latest' :: ippcp -- latest ++ . /opt/intel/oneapi/ippcp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ippcp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ippcp/latest/env +++++ cd /opt/intel/oneapi/ippcp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ echo /opt/intel/oneapi/ippcp/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env +++ component_root=/opt/intel/oneapi/ippcp/2021.6.0 +++ IPPCRYPTOROOT=/opt/intel/oneapi/ippcp/2021.6.0 +++ export IPPCRYPTOROOT +++ __ippcp_tmp_target_arch=intel64 +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPPCP_TARGET_ARCH=intel64 +++ IPPCP_TARGET_ARCH=intel64 ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/include /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=14 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=15 ++ for arg in "$@" +++ expr itac=latest : '\(.*\)=.*' ++ arg_base=itac +++ expr itac=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/itac/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/itac/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ echo ':: itac -- latest' :: itac -- latest ++ . /opt/intel/oneapi/itac/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/itac/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++++ prepend_path /opt/intel/licenses:/home/jenkins/intel/licenses '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_to_add=/opt/intel/licenses:/home/jenkins/intel/licenses ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ']' ++++ printf %s '/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ get_script_path /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script=/opt/intel/oneapi/itac/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/itac/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/itac/latest/env +++++ cd /opt/intel/oneapi/itac/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/itac/2021.6.0/env ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env +++ component_root=/opt/intel/oneapi/itac/2021.6.0 +++ VT_ROOT=/opt/intel/oneapi/itac/2021.6.0 +++ export VT_ROOT +++ VT_MPI=impi4 +++ VT_LIB_DIR=/opt/intel/oneapi/itac/2021.6.0/lib +++ VT_SLIB_DIR=/opt/intel/oneapi/itac/2021.6.0/slib +++ VT_ADD_LIBS='-ldwarf -lelf -lvtunwind -lm -lpthread' +++ export VT_MPI VT_LIB_DIR VT_SLIB_DIR VT_ADD_LIBS ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/slib '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/slib ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/bin /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_manpath /opt/intel/oneapi/itac/2021.6.0/man '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/man ++++ path_is_now='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=16 ++ for arg in "$@" +++ expr mkl=latest : '\(.*\)=.*' ++ arg_base=mkl +++ expr mkl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ echo ':: mkl -- latest' :: mkl -- latest ++ . /opt/intel/oneapi/mkl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mkl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++ my_script_name=vars.sh ++++ get_script_path /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mkl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mkl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mkl/latest/env +++++ cd /opt/intel/oneapi/mkl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mkl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/mkl/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env +++ MKLROOT=/opt/intel/oneapi/mkl/2022.1.0 +++ export MKLROOT +++ __mkl_tmp_SCRIPT_NAME=vars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_TARGET_ARCH=intel64 +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_help= +++ '[' -z SETVARS_CALL=1 ']' +++ '[' -n SETVARS_CALL=1 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ '[' SETVARS_CALL=1 = lp64 ']' +++ '[' SETVARS_CALL=1 = ilp64 ']' +++ '[' SETVARS_CALL=1 = mod ']' +++ '[' SETVARS_CALL=1 = verbose ']' +++ '[' SETVARS_CALL=1 = help ']' +++ shift +++ '[' -n '' ']' +++ '[' -z '' ']' +++ __mkl_lib_dir=/opt/intel/oneapi/mkl/2022.1.0/lib +++ __cpath=/opt/intel/oneapi/mkl/2022.1.0/include +++ __mkl_bin_dir=/opt/intel/oneapi/mkl/2022.1.0/bin +++ __ld_library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __path=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64 +++ __nlspath=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' '' = verbose ']' ++ temp_var=17 ++ for arg in "$@" +++ expr mpi=latest : '\(.*\)=.*' ++ arg_base=mpi +++ expr mpi=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ echo ':: mpi -- latest' :: mpi -- latest ++ . /opt/intel/oneapi/mpi/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mpi/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mpi/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mpi/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mpi/latest/env +++++ cd /opt/intel/oneapi/mpi/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mpi/2021.6.0/env ++++ printf %s /opt/intel/oneapi/mpi/2021.6.0/env +++ MPIVARS_DIR=/opt/intel/oneapi/mpi/2021.6.0/env ++++ cd /opt/intel/oneapi/mpi/2021.6.0/env/.. ++++ pwd +++ I_MPI_ROOT=/opt/intel/oneapi/mpi/2021.6.0 +++ export I_MPI_ROOT +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH +++ PLATFORM= +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' -z /opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar ']' +++ CLASSPATH=/opt/intel/oneapi/mpi/2021.6.0//lib/mpi.jar:/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '' ']' +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ CPATH=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH +++ export 'MANPATH=/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ MANPATH='/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib/prov:/usr/lib64/libfabric +++ export FI_PROVIDER_PATH ++ temp_var=18 ++ for arg in "$@" +++ expr tbb=latest : '\(.*\)=.*' ++ arg_base=tbb +++ expr tbb=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ echo ':: tbb -- latest' :: tbb -- latest ++ . /opt/intel/oneapi/tbb/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/tbb/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/tbb/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/tbb/latest/env +++++ cd /opt/intel/oneapi/tbb/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/tbb/2021.6.0/env ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env +++ TBBROOT=/opt/intel/oneapi/tbb/2021.6.0/env/.. +++ TBB_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ for arg in "$@" +++ case "$arg" in +++ TBB_LIB_NAME=libtbb.so.12 +++ TBB_LIB_DIR=intel64/gcc4.8 +++ '[' -e /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8/libtbb.so.12 ']' +++ export TBBROOT ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../include /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../include ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/.. /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/.. ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=19 ++ for arg in "$@" +++ expr vpl=latest : '\(.*\)=.*' ++ arg_base=vpl +++ expr vpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ echo ':: vpl -- latest' :: vpl -- latest ++ . /opt/intel/oneapi/vpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-e935b363/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 405911 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/vpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vpl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vpl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vpl/latest/env +++++ cd /opt/intel/oneapi/vpl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/vpl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/env +++ script_path=/opt/intel/oneapi/vpl/2022.1.0/env +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ cd /opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ pwd +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0 +++ vpl_include=/opt/intel/oneapi/vpl/2022.1.0/include +++ vpl_lib=/opt/intel/oneapi/vpl/2022.1.0/lib +++ vpl_bin=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/include /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/bin /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0 /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0 ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=20 ++ for arg in "$@" +++ expr vtune=latest : '\(.*\)=.*' ++ arg_base=vtune +++ expr vtune=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ echo ':: vtune -- latest' :: vtune -- latest ++ . /opt/intel/oneapi/vtune/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vtune/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vtune/latest/env +++++ cd /opt/intel/oneapi/vtune/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0/env +++++ dirname /opt/intel/oneapi/vtune/2022.3.0/env ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0 ++++ echo /opt/intel/oneapi/vtune/2022.3.0 +++ PRODUCT_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ export VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++ temp_var=21 ++ '[' 21 -eq 0 ']' ++ echo ':: oneAPI environment initialized ::' :: oneAPI environment initialized :: ++ echo ' ' ++ '[' 0 -ne 0 ']' ++ eval set -- ''\''--force'\'' \ ' +++ set -- --force ++ prep_for_exit 0 ++ script_return_code=0 ++ unset -v SETVARS_CALL ++ unset -v SETVARS_ARGS ++ unset -v SETVARS_VARS_PATH ++ '[' 0 = '' ']' ++ '[' 0 -eq 0 ']' ++ SETVARS_COMPLETED=1 ++ export SETVARS_COMPLETED ++ return 0 ++ return + bash -c 'export e3smSource=/home/jenkins/workspace/branch_e3sm_test; csh nightly_test/nightly_e3sm_scm_RICO.csh' Compset longname is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_e3sm_test/cime_config/allactive/config_pesall.xml Could not find machine match for 'nelson.localdomain' or 'nelson' Machine is nelson Pes setting: grid is a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Pes setting: compset is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 16, 'NTASKS_LND': 16, 'NTASKS_ROF': 16, 'NTASKS_ICE': 16, 'NTASKS_OCN': 16, 'NTASKS_GLC': 16, 'NTASKS_WAV': 16, 'NTASKS_CPL': 16} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Components in compset are: ['eam', 'elm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp'] No charge_account info available, using value from PROJECT e3sm model version found: 4a895c8ce1 Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: Unknown Job Queue specified use --force to set /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/env_mach_specific.xml already exists, delete to replace Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup 2023-06-29 18:27:37 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-06-29 18:27:37 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-06-29 18:27:38 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-06-29 18:27:38 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-06-29 18:27:38 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-06-29 18:27:38 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-06-29 18:27:38 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-06-29 18:27:38 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-06-29 18:27:38 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-06-29 18:27:38 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts sharedlib_only is False model_only is False Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Generating component namelists as part of build 2023-06-29 18:27:40 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-06-29 18:27:41 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-06-29 18:27:41 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-06-29 18:27:41 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-06-29 18:27:41 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-06-29 18:27:41 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-06-29 18:27:41 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-06-29 18:27:41 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-06-29 18:27:41 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-06-29 18:27:41 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Building gptl with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gptl.bldlog.230629-182740 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/mct.bldlog.230629-182740 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/pio.bldlog.230629-182740 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/csm_share.bldlog.230629-182740 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings Building kokkos with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/kokkos.bldlog.230629-182740 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.kokkos Configuring full e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.230629-182740 Calling cmake directly, see top of log file for specific call Building e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.230629-182740 Calling make, see top of log file for specific call Total build time: 399.991443 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-06-29 18:34:21 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-06-29 18:34:21 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-06-29 18:34:21 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-06-29 18:34:21 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-06-29 18:34:21 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-06-29 18:34:21 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-06-29 18:34:21 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-06-29 18:34:21 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-06-29 18:34:21 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-06-29 18:34:21 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Checking that inputdata is available as part of case submission Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/elm.input_data_list' Model elm no file specified for finidat Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/eam.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2023-06-29 18:34:22 CASE.RUN BEGINS HERE 2023-06-29 18:34:22 RUN_MODEL BEGINS HERE 2023-06-29 18:34:22 PRE_RUN_CHECK BEGINS HERE Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-06-29 18:34:22 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts 2023-06-29 18:34:22 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-06-29 18:34:22 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-06-29 18:34:22 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-06-29 18:34:22 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-06-29 18:34:22 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-06-29 18:34:22 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-06-29 18:34:22 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-06-29 18:34:22 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-06-29 18:34:22 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-06-29 18:34:22 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml 2023-06-29 18:34:23 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2023-06-29 18:34:23 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe >> e3sm.log.$LID 2>&1 2023-06-29 18:34:23 SAVE_PRERUN_PROVENANCE BEGINS HERE 2023-06-29 18:34:23 SAVE_PRERUN_PROVENANCE HAS FINISHED 2023-06-29 18:34:23 MODEL EXECUTION BEGINS HERE 2023-06-29 18:34:24 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/run/e3sm.log.230629-183422 Submitted job case.run with id None RICO was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run ARM97) [Pipeline] sh + source /opt/intel/oneapi/setvars.sh --force ++ script_name=setvars.sh ++ config_file= ++ config_array= ++ component_array= ++ warning_tally=0 ++ posix_nl=' ' +++ save_args --force +++ for arg in "$@" +++ printf '%s\n' --force +++ sed -e 's/'\''/'\''\\'\'''\''/g' -e '1s/^/'\''/' -e '$s/$/'\'' \\/' +++ echo ' ' ++ script_args=''\''--force'\'' \ ' ++ _setvars_this_script_name=setvars.sh +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++ '[' setvars.sh = script.sh ']' ++ sourcer= ++ sourced_nm= +++ ps -p 520398 -o comm= ++ sourced_sh=bash +++ _setvars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' -n '' ']' +++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' +++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++ proc_name=script.sh ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n '5.1.4(1)-release' ']' +++ printf '%s: %s' script.sh 'BASH_VERSION = 5.1.4(1)-release' ++ sourcer='script.sh: BASH_VERSION = 5.1.4(1)-release' ++ return 0 ++ sourced_nm=/opt/intel/oneapi/setvars.sh ++ '[' '' = /opt/intel/oneapi/setvars.sh ']' +++ get_script_path /opt/intel/oneapi/setvars.sh +++ script=/opt/intel/oneapi/setvars.sh +++ '[' -L /opt/intel/oneapi/setvars.sh ']' ++++ command dirname -- /opt/intel/oneapi/setvars.sh +++ script_dir=/opt/intel/oneapi ++++ cd /opt/intel/oneapi ++++ command pwd -P +++ script_dir=/opt/intel/oneapi +++ printf %s /opt/intel/oneapi ++ script_root=/opt/intel/oneapi ++ help=0 ++ force=0 ++ config=0 ++ config_file= ++ list_of_args= ++ '[' -n '' ']' +++ printf '%s %s' 'args: Using "$@" for setvars.sh arguments:' --force ++ input_args='args: Using "$@" for setvars.sh arguments: --force' ++ for arg in "$@" ++ shift ++ case "$arg" in ++ force=1 ++ SETVARS_ARGS= ++ export SETVARS_ARGS ++ '[' 0 '!=' 0 ']' ++ '[' '' = 1 ']' ++ '[' 0 -eq 1 ']' ++ version_default=latest +++ awk NF +++ command ls /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ component_array='/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' ++ temp_array= +++ prep_for_eval '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ echo '/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''/opt/intel/oneapi/advisor/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/advisor/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ccl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/clck/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/compiler/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dal/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/debugger/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dev-utilities/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dnnl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/2021.7.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/dpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/inspector/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/intelpython/python3.9/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ippcp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/ipp/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/itac/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mkl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/mpi/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/2021.6.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/tbb/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/2022.1.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vpl/latest/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/2022.3.0/env/vars.sh'\'' \ '\''/opt/intel/oneapi/vtune/latest/env/vars.sh'\'' ' +++ set -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh /opt/intel/oneapi/advisor/latest/env/vars.sh /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh /opt/intel/oneapi/ccl/latest/env/vars.sh /opt/intel/oneapi/clck/2021.6.0/env/vars.sh /opt/intel/oneapi/clck/latest/env/vars.sh /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh /opt/intel/oneapi/compiler/latest/env/vars.sh /opt/intel/oneapi/dal/2021.6.0/env/vars.sh /opt/intel/oneapi/dal/latest/env/vars.sh /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh /opt/intel/oneapi/debugger/latest/env/vars.sh /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh /opt/intel/oneapi/dev-utilities/latest/env/vars.sh /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh /opt/intel/oneapi/dnnl/latest/env/vars.sh /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh /opt/intel/oneapi/dpl/latest/env/vars.sh /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh /opt/intel/oneapi/inspector/latest/env/vars.sh /opt/intel/oneapi/intelpython/latest/env/vars.sh /opt/intel/oneapi/intelpython/python3.9/env/vars.sh /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh /opt/intel/oneapi/ippcp/latest/env/vars.sh /opt/intel/oneapi/ipp/latest/env/vars.sh /opt/intel/oneapi/itac/2021.6.0/env/vars.sh /opt/intel/oneapi/itac/latest/env/vars.sh /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh /opt/intel/oneapi/mkl/latest/env/vars.sh /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh /opt/intel/oneapi/mpi/latest/env/vars.sh /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh /opt/intel/oneapi/tbb/latest/env/vars.sh /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh /opt/intel/oneapi/vpl/latest/env/vars.sh /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh /opt/intel/oneapi/vtune/latest/env/vars.sh ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/advisor/2022.1.0 +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/advisor/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/advisor/latest/env ++++ dirname -- /opt/intel/oneapi/advisor/latest +++ basename -- /opt/intel/oneapi/advisor ++ arg=advisor ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ temp_array='advisor advisor ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ccl/2021.6.0 +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ccl/latest/env ++++ dirname -- /opt/intel/oneapi/ccl/latest +++ basename -- /opt/intel/oneapi/ccl ++ arg=ccl ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0 +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/clck/latest/env ++++ dirname -- /opt/intel/oneapi/clck/latest +++ basename -- /opt/intel/oneapi/clck ++ arg=clck ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0 +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/compiler/latest/env ++++ dirname -- /opt/intel/oneapi/compiler/latest +++ basename -- /opt/intel/oneapi/compiler ++ arg=compiler ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0 +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dal/latest/env ++++ dirname -- /opt/intel/oneapi/dal/latest +++ basename -- /opt/intel/oneapi/dal ++ arg=dal ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0 +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/debugger/latest/env ++++ dirname -- /opt/intel/oneapi/debugger/latest +++ basename -- /opt/intel/oneapi/debugger ++ arg=debugger ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0 +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dev-utilities/latest/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/latest +++ basename -- /opt/intel/oneapi/dev-utilities ++ arg=dev-utilities ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dnnl/2022.1.0 +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dnnl/latest/env ++++ dirname -- /opt/intel/oneapi/dnnl/latest +++ basename -- /opt/intel/oneapi/dnnl ++ arg=dnnl ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/latest +++ basename -- /opt/intel/oneapi/dpcpp-ct ++ arg=dpcpp-ct ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0 +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/dpl/latest/env ++++ dirname -- /opt/intel/oneapi/dpl/latest +++ basename -- /opt/intel/oneapi/dpl ++ arg=dpl ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/inspector/2022.1.0 +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/inspector/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/inspector/latest/env ++++ dirname -- /opt/intel/oneapi/inspector/latest +++ basename -- /opt/intel/oneapi/inspector ++ arg=inspector ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/latest/env ++++ dirname -- /opt/intel/oneapi/intelpython/latest +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env/vars.sh +++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9 +++ basename -- /opt/intel/oneapi/intelpython ++ arg=intelpython ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0 +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0 +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ippcp/latest/env ++++ dirname -- /opt/intel/oneapi/ippcp/latest +++ basename -- /opt/intel/oneapi/ippcp ++ arg=ippcp ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/ipp/latest/env ++++ dirname -- /opt/intel/oneapi/ipp/latest +++ basename -- /opt/intel/oneapi/ipp ++ arg=ipp ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0 +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/itac/latest/env ++++ dirname -- /opt/intel/oneapi/itac/latest +++ basename -- /opt/intel/oneapi/itac ++ arg=itac ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0 +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mkl/latest/env ++++ dirname -- /opt/intel/oneapi/mkl/latest +++ basename -- /opt/intel/oneapi/mkl ++ arg=mkl ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/mpi/2021.6.0 +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/mpi/latest/env ++++ dirname -- /opt/intel/oneapi/mpi/latest +++ basename -- /opt/intel/oneapi/mpi ++ arg=mpi ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/tbb/2021.6.0 +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/tbb/latest/env ++++ dirname -- /opt/intel/oneapi/tbb/latest +++ basename -- /opt/intel/oneapi/tbb ++ arg=tbb ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/vpl/2022.1.0 +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vpl/latest/env ++++ dirname -- /opt/intel/oneapi/vpl/latest +++ basename -- /opt/intel/oneapi/vpl ++ arg=vpl ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0/env ++++ dirname -- /opt/intel/oneapi/vtune/2022.3.0 +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune ' ++ for arg in "$@" ++++++ dirname -- /opt/intel/oneapi/vtune/latest/env/vars.sh +++++ dirname -- /opt/intel/oneapi/vtune/latest/env ++++ dirname -- /opt/intel/oneapi/vtune/latest +++ basename -- /opt/intel/oneapi/vtune ++ arg=vtune ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ temp_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' ++ component_array='advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ printf '%s\n' 'advisor advisor ccl ccl clck clck compiler compiler dal dal debugger debugger dev-utilities dev-utilities dnnl dnnl dpcpp-ct dpcpp-ct dpl dpl inspector inspector intelpython intelpython ipp ippcp ippcp ipp itac itac mkl mkl mpi mpi tbb tbb vpl vpl vtune vtune ' +++ uniq ++ component_array='advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ printf '%s\n' 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ wc -l ++ temp_var=21 ++ '[' 21 -le 0 ']' ++ '[' 0 = 1 ']' +++ prep_for_eval 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ echo 'advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor'\'' \ '\''ccl'\'' \ '\''clck'\'' \ '\''compiler'\'' \ '\''dal'\'' \ '\''debugger'\'' \ '\''dev-utilities'\'' \ '\''dnnl'\'' \ '\''dpcpp-ct'\'' \ '\''dpl'\'' \ '\''inspector'\'' \ '\''intelpython'\'' \ '\''ipp'\'' \ '\''ippcp'\'' \ '\''ipp'\'' \ '\''itac'\'' \ '\''mkl'\'' \ '\''mpi'\'' \ '\''tbb'\'' \ '\''vpl'\'' \ '\''vtune'\'' ' +++ set -- advisor ccl clck compiler dal debugger dev-utilities dnnl dpcpp-ct dpl inspector intelpython ipp ippcp ipp itac mkl mpi tbb vpl vtune ++ temp_array= ++ for arg in "$@" ++ arg=advisor=latest ++ temp_array='advisor=latest ' ++ for arg in "$@" ++ arg=ccl=latest ++ temp_array='advisor=latest ccl=latest ' ++ for arg in "$@" ++ arg=clck=latest ++ temp_array='advisor=latest ccl=latest clck=latest ' ++ for arg in "$@" ++ arg=compiler=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest ' ++ for arg in "$@" ++ arg=dal=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest ' ++ for arg in "$@" ++ arg=debugger=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest ' ++ for arg in "$@" ++ arg=dev-utilities=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest ' ++ for arg in "$@" ++ arg=dnnl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest ' ++ for arg in "$@" ++ arg=dpcpp-ct=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest ' ++ for arg in "$@" ++ arg=dpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest ' ++ for arg in "$@" ++ arg=inspector=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest ' ++ for arg in "$@" ++ arg=intelpython=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ' ++ for arg in "$@" ++ arg=ippcp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ' ++ for arg in "$@" ++ arg=ipp=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest ' ++ for arg in "$@" ++ arg=itac=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest ' ++ for arg in "$@" ++ arg=mkl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest ' ++ for arg in "$@" ++ arg=mpi=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest ' ++ for arg in "$@" ++ arg=tbb=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest ' ++ for arg in "$@" ++ arg=vpl=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest ' ++ for arg in "$@" ++ arg=vtune=latest ++ temp_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' ++ '[' 0 = 1 ']' +++ printf '%s\n' 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ' +++ awk NF ++ component_array='advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' ++ echo ' ' ++ echo ':: initializing oneAPI environment ...' :: initializing oneAPI environment ... ++ echo ' script.sh: BASH_VERSION = 5.1.4(1)-release' script.sh: BASH_VERSION = 5.1.4(1)-release ++ echo ' args: Using "$@" for setvars.sh arguments: --force' args: Using "$@" for setvars.sh arguments: --force ++ ONEAPI_ROOT=/opt/intel/oneapi ++ export ONEAPI_ROOT ++ SETVARS_CALL=1 ++ export SETVARS_CALL ++ temp_var=0 +++ prep_for_eval 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ echo 'advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest' +++ awk NF +++ sed -e 's/^/'\''/g' -e 's/$/'\'' \\/g' -e '$s/\\$//' ++ eval set -- ''\''advisor=latest'\'' \ '\''ccl=latest'\'' \ '\''clck=latest'\'' \ '\''compiler=latest'\'' \ '\''dal=latest'\'' \ '\''debugger=latest'\'' \ '\''dev-utilities=latest'\'' \ '\''dnnl=latest'\'' \ '\''dpcpp-ct=latest'\'' \ '\''dpl=latest'\'' \ '\''inspector=latest'\'' \ '\''intelpython=latest'\'' \ '\''ipp=latest'\'' \ '\''ippcp=latest'\'' \ '\''ipp=latest'\'' \ '\''itac=latest'\'' \ '\''mkl=latest'\'' \ '\''mpi=latest'\'' \ '\''tbb=latest'\'' \ '\''vpl=latest'\'' \ '\''vtune=latest'\'' ' +++ set -- advisor=latest ccl=latest clck=latest compiler=latest dal=latest debugger=latest dev-utilities=latest dnnl=latest dpcpp-ct=latest dpl=latest inspector=latest intelpython=latest ipp=latest ippcp=latest ipp=latest itac=latest mkl=latest mpi=latest tbb=latest vpl=latest vtune=latest ++ for arg in "$@" +++ expr advisor=latest : '\(.*\)=.*' ++ arg_base=advisor +++ expr advisor=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/advisor/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/advisor/latest/env/vars.sh ']' ++ echo ':: advisor -- latest' :: advisor -- latest ++ . /opt/intel/oneapi/advisor/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script=/opt/intel/oneapi/advisor/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/advisor/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/advisor/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/advisor/latest/env +++++ cd /opt/intel/oneapi/advisor/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0/env +++++ dirname /opt/intel/oneapi/advisor/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/advisor/2022.1.0 ++++ echo /opt/intel/oneapi/advisor/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/advisor/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ ADVISOR_2022_DIR=/opt/intel/oneapi/advisor/2022.1.0 +++ export PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ PYTHONPATH=/opt/intel/oneapi/advisor/2022.1.0/pythonapi +++ export APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels +++ APM=/opt/intel/oneapi/advisor/2022.1.0/perfmodels ++ temp_var=1 ++ for arg in "$@" +++ expr ccl=latest : '\(.*\)=.*' ++ arg_base=ccl +++ expr ccl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ccl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++ echo ':: ccl -- latest' :: ccl -- latest ++ . /opt/intel/oneapi/ccl/latest/env/vars.sh SETVARS_CALL=1 +++ DEFAULT_CONFIGURATION=cpu_gpu_dpcpp +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ccl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ccl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ccl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ccl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ccl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ccl/latest/env +++++ cd /opt/intel/oneapi/ccl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ccl/2021.6.0/env ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/env +++ WORK_DIR=/opt/intel/oneapi/ccl/2021.6.0/env ++++ cd /opt/intel/oneapi/ccl/2021.6.0/env/../ ++++ pwd -P +++ CCL_ROOT=/opt/intel/oneapi/ccl/2021.6.0 +++ export CCL_ROOT +++ '[' -z '' ']' +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ ccl_configuration=cpu_gpu_dpcpp +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$ccl_configuration" in +++ CCL_CONFIGURATION=cpu_gpu_dpcpp +++ export CCL_CONFIGURATION ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_is_now='$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=2 ++ for arg in "$@" +++ expr clck=latest : '\(.*\)=.*' ++ arg_base=clck +++ expr clck=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/clck/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/clck/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++ echo ':: clck -- latest' :: clck -- latest ++ . /opt/intel/oneapi/clck/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/clck/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/clck/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/clck/latest/env/vars.sh +++ SCRIPT_NAME=vars.sh ++++ get_script_path /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script=/opt/intel/oneapi/clck/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/clck/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/clck/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/clck/latest/env +++++ cd /opt/intel/oneapi/clck/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/clck/2021.6.0/env ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/env +++ SCRIPT_PATH=/opt/intel/oneapi/clck/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/clck/2021.6.0/env +++ CLCK_ROOT=/opt/intel/oneapi/clck/2021.6.0 +++ export CLCK_ROOT +++ dir=intel64 ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/bin/intel64 /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/bin/intel64 ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/lib/intel64 /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/clck/2021.6.0/include '' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/include ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/clck/2021.6.0/include +++ CPLUS_INCLUDE_PATH=/opt/intel/oneapi/clck/2021.6.0/include +++ export CPLUS_INCLUDE_PATH ++++ prepend_path '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' '' ++++ path_to_add='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ prepend_manpath /opt/intel/oneapi/clck/2021.6.0/man '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/clck/2021.6.0/man ++++ path_is_now='$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=3 ++ for arg in "$@" +++ expr compiler=latest : '\(.*\)=.*' ++ arg_base=compiler +++ expr compiler=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/compiler/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++ echo ':: compiler -- latest' :: compiler -- latest ++ . /opt/intel/oneapi/compiler/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/compiler/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/compiler/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script=/opt/intel/oneapi/compiler/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/compiler/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/compiler/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/compiler/latest/env +++++ cd /opt/intel/oneapi/compiler/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/compiler/2022.1.0/env ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/compiler/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/compiler/2022.1.0/env +++ component_root=/opt/intel/oneapi/compiler/2022.1.0 +++ CMPLR_ROOT=/opt/intel/oneapi/compiler/2022.1.0 +++ export CMPLR_ROOT +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ USE_INTEL_LLVM=0 +++ '[' 1 -gt 0 ']' +++ case "$1" in +++ shift +++ '[' 0 -gt 0 ']' +++ '[' intel64 = ia32 ']' +++ unset INTEL_TARGET_ARCH_IA32 ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' 0 = 1 ']' +++ '[' intel64 = ia32 ']' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib ++++ path_is_now=/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin ++++ path_is_now='/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' intel64 = ia32 ']' +++ '[' -n '' ']' +++ '[' -f /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ']' +++ FPGA_VARS_DIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga +++ export FPGA_VARS_DIR +++ FPGA_VARS_ARGS= +++ export FPGA_VARS_ARGS +++ . /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/fpgavars.sh ++++ SCRIPTDIR=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ icdadd libalteracl.so ++++ '[' -z '' ']' ++++ export OCL_ICD_FILENAMES=libalteracl.so ++++ OCL_ICD_FILENAMES=libalteracl.so ++++ icdadd libintelocl_emu.so ++++ '[' -z x ']' ++++ case ":$OCL_ICD_FILENAMES:" in ++++ export OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so ++++ export ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ ACL_BOARD_VENDOR_PATH=/opt/Intel/OpenCLFPGA/oneAPI/Boards ++++ export INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ INTELFPGAOCLSDKROOT=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga ++++ export PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ uname -m ++++ ARCH=x86_64 ++++ arch_type= ++++ case $ARCH in ++++ arch_type=linux64 ++++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64 ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z libintelocl_emu.so:libalteracl.so ']' +++ OCL_ICD_FILENAMES=libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so +++ '[' -n '' ']' +++ export OCL_ICD_FILENAMES ++++ prepend_manpath /opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N '' ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export NLSPATH ++++ prepend_path /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=4 ++ for arg in "$@" +++ expr dal=latest : '\(.*\)=.*' ++ arg_base=dal +++ expr dal=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dal/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dal/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++ echo ':: dal -- latest' :: dal -- latest ++ . /opt/intel/oneapi/dal/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dal/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dal/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dal/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dal/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dal/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dal/latest/env +++++ cd /opt/intel/oneapi/dal/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dal/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dal/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/dal/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dal/2021.6.0/env +++ component_root=/opt/intel/oneapi/dal/2021.6.0 +++ __daal_tmp_dir='<INSTALLDIR>' +++ __daal_tmp_dir='<INSTALLDIR>/dal' +++ '[' '!' -d '<INSTALLDIR>/dal' ']' +++ __daal_tmp_dir=/opt/intel/oneapi/dal/2021.6.0 +++ export DAL_MAJOR_BINARY=1 +++ DAL_MAJOR_BINARY=1 +++ export DAL_MINOR_BINARY=1 +++ DAL_MINOR_BINARY=1 +++ export DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ DAALROOT=/opt/intel/oneapi/dal/2021.6.0 +++ export CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ CLASSPATH=/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++ temp_var=5 ++ for arg in "$@" +++ expr debugger=latest : '\(.*\)=.*' ++ arg_base=debugger +++ expr debugger=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/debugger/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++ echo ':: debugger -- latest' :: debugger -- latest ++ . /opt/intel/oneapi/debugger/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/debugger/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/debugger/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script=/opt/intel/oneapi/debugger/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/debugger/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/debugger/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/debugger/latest/env +++++ cd /opt/intel/oneapi/debugger/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/debugger/2021.6.0/env ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/debugger/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/debugger/2021.6.0/env +++ gdb_root=/opt/intel/oneapi/debugger/2021.6.0 +++ my_ld_path=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/dep '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/dep ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/dep +++ INTEL_PYTHONHOME=/opt/intel/oneapi/debugger/2021.6.0/dep +++ export INTEL_PYTHONHOME ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib ++++ path_is_now='/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_manpath /opt/intel/oneapi/debugger/2021.6.0/documentation/man '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/man ++++ path_is_now='/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ INFOPATH=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib +++ export INFOPATH ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ '' ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ ++++ path_is_now= ++++ '[' '' = '' ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ GDB_INFO=/opt/intel/oneapi/debugger/2021.6.0/documentation/info/ +++ export GDB_INFO ++++ prepend_path /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py ++++ path_is_now=/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++ temp_var=6 ++ for arg in "$@" +++ expr dev-utilities=latest : '\(.*\)=.*' ++ arg_base=dev-utilities +++ expr dev-utilities=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++ echo ':: dev-utilities -- latest' :: dev-utilities -- latest ++ . /opt/intel/oneapi/dev-utilities/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dev-utilities/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dev-utilities/latest/env +++++ cd /opt/intel/oneapi/dev-utilities/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/dev-utilities/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/dev-utilities/2021.6.0/env +++ component_root=/opt/intel/oneapi/dev-utilities/2021.6.0 ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/bin /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dev-utilities/2021.6.0/include /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dev-utilities/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=7 ++ for arg in "$@" +++ expr dnnl=latest : '\(.*\)=.*' ++ arg_base=dnnl +++ expr dnnl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++ echo ':: dnnl -- latest' :: dnnl -- latest ++ . /opt/intel/oneapi/dnnl/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= +++ __dnnl_known_configurations='cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' ++++ cut '-d ' -f1 +++ __dnnl_def_configuration=cpu_dpcpp_gpu_dpcpp ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dnnl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dnnl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dnnl/latest/env +++++ cd /opt/intel/oneapi/dnnl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ echo /opt/intel/oneapi/dnnl/2022.1.0/env +++ __dnnl_this_dir_path=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ dnnl_check_local_env +++++ basename -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ __dnnl_this_dir_name=env +++++ dnnl_match_configuration env +++++ echo 'cpu_dpcpp_gpu_dpcpp cpu_gomp cpu_iomp cpu_tbb' +++++ tr ' ' '\n' +++++ read -r item +++++ '[' env = cpu_dpcpp_gpu_dpcpp ']' +++++ read -r item +++++ '[' env = cpu_gomp ']' +++++ read -r item +++++ '[' env = cpu_iomp ']' +++++ read -r item +++++ '[' env = cpu_tbb ']' +++++ read -r item +++++ echo '' ++++ echo '' +++ '[' -n '' ']' +++ dnnl_env_vars_main SETVARS_CALL=1 +++ __dnnl_configuration= +++ for param in "$@" +++ __tmp_dnnl_configuration=SETVARS_CALL=1 +++ '[' SETVARS_CALL=1 = --dnnl-configuration=SETVARS_CALL=1 ']' +++ '[' -n '' ']' +++ __dnnl_configuration=cpu_dpcpp_gpu_dpcpp ++++ get_script_path /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script=/opt/intel/oneapi/dnnl/2022.1.0/env ++++ '[' -L /opt/intel/oneapi/dnnl/2022.1.0/env ']' +++++ command dirname -- /opt/intel/oneapi/dnnl/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++++ cd /opt/intel/oneapi/dnnl/2022.1.0 +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dnnl/2022.1.0 ++++ echo /opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_base_dir=/opt/intel/oneapi/dnnl/2022.1.0 +++ dnnl_set_env_vars /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ export DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ DNNLROOT=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp +++ '[' -n '/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ export LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ export CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ '[' -n /opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' -n /opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' +++ export CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ unset __dnnl_known_configurations +++ unset __dnnl_def_configuration +++ unset __dnnl_this_dir_path +++ unset __dnnl_this_dir_name +++ unset __dnnl_configuration ++ temp_var=8 ++ for arg in "$@" +++ expr dpcpp-ct=latest : '\(.*\)=.*' ++ arg_base=dpcpp-ct +++ expr dpcpp-ct=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++ echo ':: dpcpp-ct -- latest' :: dpcpp-ct -- latest ++ . /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh SETVARS_CALL=1 +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script=/opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/dpcpp-ct/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/latest/env +++++ cd /opt/intel/oneapi/dpcpp-ct/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/dpcpp-ct/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/dpcpp-ct/2022.1.0/env +++ component_root=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ DPCT_BUNDLE_ROOT=/opt/intel/oneapi/dpcpp-ct/2022.1.0 +++ export DPCT_BUNDLE_ROOT ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh ++++ path_is_now=/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ++++ '[' '' = /opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export DIAGUTIL_PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/dpcpp-ct/2022.1.0/include /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++ temp_var=9 ++ for arg in "$@" +++ expr dpl=latest : '\(.*\)=.*' ++ arg_base=dpl +++ expr dpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/dpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++ echo ':: dpl -- latest' :: dpl -- latest ++ . /opt/intel/oneapi/dpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/dpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ rreadlink /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ target=/opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname= +++++ targetDir= +++++ CDPATH= +++++ '[' -n '' ']' +++++ : +++++ '[' -L /opt/intel/oneapi/dpl/latest/env/vars.sh ']' +++++ '[' -e /opt/intel/oneapi/dpl/latest/env/vars.sh ']' ++++++ command dirname -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ command cd /opt/intel/oneapi/dpl/latest/env ++++++ command basename -- /opt/intel/oneapi/dpl/latest/env/vars.sh +++++ fname=vars.sh +++++ '[' vars.sh = / ']' +++++ '[' -L vars.sh ']' +++++ break ++++++ command pwd -P +++++ targetDir=/opt/intel/oneapi/dpl/2021.7.0/env +++++ '[' vars.sh = . ']' +++++ '[' vars.sh = .. ']' +++++ command printf '%s\n' /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env/vars.sh +++ _onedpl_scrip_path=/opt/intel/oneapi/dpl/2021.7.0/env ++++ dirname -- /opt/intel/oneapi/dpl/2021.7.0/env +++ DPL_ROOT=/opt/intel/oneapi/dpl/2021.7.0 +++ export DPL_ROOT ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/linux/include /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/linux/include ++++ path_is_now=/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=10 ++ for arg in "$@" +++ expr inspector=latest : '\(.*\)=.*' ++ arg_base=inspector +++ expr inspector=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/inspector/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/inspector/latest/env/vars.sh ']' ++ echo ':: inspector -- latest' :: inspector -- latest ++ . /opt/intel/oneapi/inspector/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script=/opt/intel/oneapi/inspector/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/inspector/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/inspector/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/inspector/latest/env +++++ cd /opt/intel/oneapi/inspector/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0/env +++++ dirname /opt/intel/oneapi/inspector/2022.1.0/env ++++ script_dir=/opt/intel/oneapi/inspector/2022.1.0 ++++ echo /opt/intel/oneapi/inspector/2022.1.0 +++ PRODUCT_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 +++ INSPECTOR_2022_DIR=/opt/intel/oneapi/inspector/2022.1.0 ++ temp_var=11 ++ for arg in "$@" +++ expr intelpython=latest : '\(.*\)=.*' ++ arg_base=intelpython +++ expr intelpython=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++ echo ':: intelpython -- latest' :: intelpython -- latest ++ . /opt/intel/oneapi/intelpython/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/intelpython/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script=/opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/intelpython/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/intelpython/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/intelpython/latest/env +++++ cd /opt/intel/oneapi/intelpython/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/intelpython/python3.9/env ++++ printf %s /opt/intel/oneapi/intelpython/python3.9/env +++ SCRIPTPATH=/opt/intel/oneapi/intelpython/python3.9/env ++++ dirname -- /opt/intel/oneapi/intelpython/python3.9/env +++ ROOTPATH=/opt/intel/oneapi/intelpython/python3.9 ++++ basename /opt/intel/oneapi/intelpython/python3.9 +++ VERSION=python3.9 ++++ dirname /opt/intel/oneapi/intelpython/python3.9 +++ PARENTDIR=/opt/intel/oneapi/intelpython ++++ basename /opt/intel/oneapi/intelpython +++ CURRENTENV=intelpython +++ MAINENV=intelpython +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.10 ']' +++ '[' -d /opt/intel/oneapi/intelpython/python3.9/lib/python3.9 ']' +++ PYVER=python3.9 +++ POTENTIAL_ACTIVATE_PATH=/opt/intel/oneapi/intelpython/python3.9/../../intelpython/python3.9/bin/activate +++ '[' /opt/intel/oneapi/intelpython/latest/env/vars.sh = intelpython/latest/env/vars.sh ']' +++ export OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ OVERWRITE_CONDA_DEFAULT_ENV=intelpython-python3.9 +++ '[' intelpython '!=' intelpython ']' +++ '[' -n 1 ']' +++ '[' -n '' ']' +++ BACKUP_SETVARS_CALL_PARAMETERS=SETVARS_CALL=1 +++ SANITIZED_SETVARS_CALL_PARAMETERS= +++ set -- '' ++++ env ++++ grep -q PS1 +++ '[' ']' +++ PS1_IS_SET=0 +++ BACKUP_PROMPT= +++ . /opt/intel/oneapi/intelpython/python3.9/bin/activate ++++ _CONDA_ROOT=/opt/intel/oneapi/intelpython/latest ++++ '[' -n '' ']' ++++ . /opt/intel/oneapi/intelpython/latest/etc/profile.d/conda.sh +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ '[' -z '' ']' +++++ export CONDA_SHLVL=0 +++++ CONDA_SHLVL=0 +++++ '[' -n '' ']' +++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ '[' -z '' ']' +++++ PS1= ++++ conda activate '' ++++ local cmd=activate ++++ case "$cmd" in ++++ __conda_activate activate '' ++++ '[' -n '' ']' ++++ local ask_conda +++++ PS1= +++++ __conda_exe shell.posix activate '' +++++ __add_sys_prefix_to_path +++++ '[' -n '' ']' ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin/conda +++++ SYSP=/opt/intel/oneapi/intelpython/latest/bin ++++++ dirname /opt/intel/oneapi/intelpython/latest/bin +++++ SYSP=/opt/intel/oneapi/intelpython/latest +++++ '[' -n '' ']' +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export PATH +++++ /opt/intel/oneapi/intelpython/latest/bin/conda shell.posix activate '' ++++ ask_conda='PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' ++++ eval 'PS1='\''(intelpython-python3.9) '\'' export PATH='\''/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin'\'' export CONDA_PREFIX='\''/opt/intel/oneapi/intelpython/latest'\'' export CONDA_SHLVL='\''1'\'' export CONDA_DEFAULT_ENV='\''intelpython-python3.9'\'' export CONDA_PROMPT_MODIFIER='\''(intelpython-python3.9) '\'' export CONDA_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/conda'\'' export _CE_M='\'''\'' export _CE_CONDA='\'''\'' export CONDA_PYTHON_EXE='\''/opt/intel/oneapi/intelpython/latest/bin/python'\'' . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh" . "/opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh"' +++++ PS1='(intelpython-python3.9) ' +++++ export PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ PATH=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++++ export CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ CONDA_PREFIX=/opt/intel/oneapi/intelpython/latest +++++ export CONDA_SHLVL=1 +++++ CONDA_SHLVL=1 +++++ export CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ CONDA_DEFAULT_ENV=intelpython-python3.9 +++++ export 'CONDA_PROMPT_MODIFIER=(intelpython-python3.9) ' +++++ CONDA_PROMPT_MODIFIER='(intelpython-python3.9) ' +++++ export CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ CONDA_EXE=/opt/intel/oneapi/intelpython/latest/bin/conda +++++ export _CE_M= +++++ _CE_M= +++++ export _CE_CONDA= +++++ _CE_CONDA= +++++ export CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ CONDA_PYTHON_EXE=/opt/intel/oneapi/intelpython/latest/bin/python +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/mpivars.activate.sh ++++++ '[' 1 '!=' 1 ']' +++++ . /opt/intel/oneapi/intelpython/latest/etc/conda/activate.d/xgboost_activate.sh ++++++ '[' libintelocl_emu.so:libalteracl.so:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64/libintelocl.so = '' ']' ++++ __conda_hashr ++++ '[' -n '' ']' ++++ '[' -n '' ']' ++++ hash -r +++ '[' 0 -eq 1 ']' +++ PS1= +++ unset BACKUP_PROMPT +++ set -- SETVARS_CALL=1 +++ unset BACKUP_SETVARS_CALL_PARAMETERS +++ unset SANITIZED_SETVARS_CALL_PARAMETERS +++ unset OVERWRITE_CONDA_DEFAULT_ENV +++ unset SCRIPTPATH +++ unset ROOTPATH +++ unset VERSION +++ unset CURRENTENV +++ unset PARENTDIR +++ unset MAINENV ++ temp_var=12 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=13 ++ for arg in "$@" +++ expr ippcp=latest : '\(.*\)=.*' ++ arg_base=ippcp +++ expr ippcp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++ echo ':: ippcp -- latest' :: ippcp -- latest ++ . /opt/intel/oneapi/ippcp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ippcp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ippcp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ippcp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ippcp/latest/env +++++ cd /opt/intel/oneapi/ippcp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ echo /opt/intel/oneapi/ippcp/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/ippcp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ippcp/2021.6.0/env +++ component_root=/opt/intel/oneapi/ippcp/2021.6.0 +++ IPPCRYPTOROOT=/opt/intel/oneapi/ippcp/2021.6.0 +++ export IPPCRYPTOROOT +++ __ippcp_tmp_target_arch=intel64 +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPPCP_TARGET_ARCH=intel64 +++ IPPCP_TARGET_ARCH=intel64 ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/include /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=14 ++ for arg in "$@" +++ expr ipp=latest : '\(.*\)=.*' ++ arg_base=ipp +++ expr ipp=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/ipp/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++ echo ':: ipp -- latest' :: ipp -- latest ++ . /opt/intel/oneapi/ipp/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/ipp/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/ipp/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script=/opt/intel/oneapi/ipp/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/ipp/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/ipp/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/ipp/latest/env +++++ cd /opt/intel/oneapi/ipp/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/ipp/2021.6.0/env ++++ echo /opt/intel/oneapi/ipp/2021.6.0/env +++ vars_script_path=/opt/intel/oneapi/ipp/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/ipp/2021.6.0/env +++ IPPROOT=/opt/intel/oneapi/ipp/2021.6.0 +++ export IPPROOT +++ IPP_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' 1 -gt 0 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ shift +++ '[' 0 -gt 0 ']' +++ export IPP_TARGET_ARCH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/include /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/include ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now=/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/ipp/2021.6.0/lib/intel64 '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/ipp/2021.6.0/lib/intel64 ++++ path_is_now='/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++ temp_var=15 ++ for arg in "$@" +++ expr itac=latest : '\(.*\)=.*' ++ arg_base=itac +++ expr itac=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/itac/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/itac/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++ echo ':: itac -- latest' :: itac -- latest ++ . /opt/intel/oneapi/itac/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/itac/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/itac/latest/env/vars.sh ']' ++++ prepend_path /opt/intel/licenses:/home/jenkins/intel/licenses '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ path_to_add=/opt/intel/licenses:/home/jenkins/intel/licenses ++++ path_is_now='/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ++++ '[' '' = '/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' ']' ++++ printf %s '/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ INTEL_LICENSE_FILE='/opt/intel/licenses:/home/jenkins/intel/licenses:/opt/intel/oneapi/clck/2021.6.0/licensing:/opt/intel/licenses:/home/jenkins/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses' +++ export INTEL_LICENSE_FILE ++++ get_script_path /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script=/opt/intel/oneapi/itac/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/itac/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/itac/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/itac/latest/env +++++ cd /opt/intel/oneapi/itac/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/itac/2021.6.0/env ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/env +++ my_script_path=/opt/intel/oneapi/itac/2021.6.0/env ++++ dirname -- /opt/intel/oneapi/itac/2021.6.0/env +++ component_root=/opt/intel/oneapi/itac/2021.6.0 +++ VT_ROOT=/opt/intel/oneapi/itac/2021.6.0 +++ export VT_ROOT +++ VT_MPI=impi4 +++ VT_LIB_DIR=/opt/intel/oneapi/itac/2021.6.0/lib +++ VT_SLIB_DIR=/opt/intel/oneapi/itac/2021.6.0/slib +++ VT_ADD_LIBS='-ldwarf -lelf -lvtunwind -lm -lpthread' +++ export VT_MPI VT_LIB_DIR VT_SLIB_DIR VT_ADD_LIBS ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/slib '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/slib ++++ path_is_now='/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/itac/2021.6.0/bin /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/bin ++++ path_is_now=/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_manpath /opt/intel/oneapi/itac/2021.6.0/man '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ path_to_add=/opt/intel/oneapi/itac/2021.6.0/man ++++ path_is_now='/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ++++ '[' '' = '/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ printf %s '/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH ++ temp_var=16 ++ for arg in "$@" +++ expr mkl=latest : '\(.*\)=.*' ++ arg_base=mkl +++ expr mkl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mkl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++ echo ':: mkl -- latest' :: mkl -- latest ++ . /opt/intel/oneapi/mkl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mkl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mkl/latest/env/vars.sh ']' ++++ basename -- /opt/intel/oneapi/mkl/latest/env/vars.sh +++ my_script_name=vars.sh ++++ get_script_path /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mkl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mkl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mkl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mkl/latest/env +++++ cd /opt/intel/oneapi/mkl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mkl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/mkl/2022.1.0/env +++ my_script_path=/opt/intel/oneapi/mkl/2022.1.0/env ++++ dirname -- /opt/intel/oneapi/mkl/2022.1.0/env +++ MKLROOT=/opt/intel/oneapi/mkl/2022.1.0 +++ export MKLROOT +++ __mkl_tmp_SCRIPT_NAME=vars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_TARGET_ARCH=intel64 +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_help= +++ '[' -z SETVARS_CALL=1 ']' +++ '[' -n SETVARS_CALL=1 ']' +++ '[' SETVARS_CALL=1 = ia32 ']' +++ '[' SETVARS_CALL=1 = intel64 ']' +++ '[' SETVARS_CALL=1 = lp64 ']' +++ '[' SETVARS_CALL=1 = ilp64 ']' +++ '[' SETVARS_CALL=1 = mod ']' +++ '[' SETVARS_CALL=1 = verbose ']' +++ '[' SETVARS_CALL=1 = help ']' +++ shift +++ '[' -n '' ']' +++ '[' -z '' ']' +++ __mkl_lib_dir=/opt/intel/oneapi/mkl/2022.1.0/lib +++ __cpath=/opt/intel/oneapi/mkl/2022.1.0/include +++ __mkl_bin_dir=/opt/intel/oneapi/mkl/2022.1.0/bin +++ __ld_library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __library_path=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64 +++ __path=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64 +++ __nlspath=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ NLSPATH=/opt/intel/oneapi/mkl/2022.1.0/lib/intel64/locale/%l_%t/%N:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin/locale/%l_%t/%N +++ export CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ '[' '' = verbose ']' ++ temp_var=17 ++ for arg in "$@" +++ expr mpi=latest : '\(.*\)=.*' ++ arg_base=mpi +++ expr mpi=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/mpi/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++ echo ':: mpi -- latest' :: mpi -- latest ++ . /opt/intel/oneapi/mpi/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/mpi/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/mpi/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script=/opt/intel/oneapi/mpi/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/mpi/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/mpi/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/mpi/latest/env +++++ cd /opt/intel/oneapi/mpi/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/mpi/2021.6.0/env ++++ printf %s /opt/intel/oneapi/mpi/2021.6.0/env +++ MPIVARS_DIR=/opt/intel/oneapi/mpi/2021.6.0/env ++++ cd /opt/intel/oneapi/mpi/2021.6.0/env/.. ++++ pwd +++ I_MPI_ROOT=/opt/intel/oneapi/mpi/2021.6.0 +++ export I_MPI_ROOT +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' +++ PKG_CONFIG_PATH=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH +++ PLATFORM= +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ '[' -z /opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar ']' +++ CLASSPATH=/opt/intel/oneapi/mpi/2021.6.0//lib/mpi.jar:/opt/intel/oneapi/dal/2021.6.0/lib/onedal.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '' ']' +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' +++ CPATH=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH +++ export 'MANPATH=/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ MANPATH='/opt/intel/oneapi/mpi/2021.6.0/man:/opt/intel/oneapi/itac/2021.6.0/man:/opt/intel/oneapi/debugger/2021.6.0/documentation/man:/opt/intel/oneapi/compiler/2022.1.0/documentation/en/man/common:/opt/intel/oneapi/clck/2021.6.0/man:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man:' +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ args=SETVARS_CALL=1 +++ for arg in $args +++ case "$arg" in +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' +++ LIBRARY_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib/prov:/usr/lib64/libfabric +++ export FI_PROVIDER_PATH ++ temp_var=18 ++ for arg in "$@" +++ expr tbb=latest : '\(.*\)=.*' ++ arg_base=tbb +++ expr tbb=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/tbb/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++ echo ':: tbb -- latest' :: tbb -- latest ++ . /opt/intel/oneapi/tbb/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/tbb/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/tbb/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_path=/opt/intel/oneapi/tbb/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/tbb/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/tbb/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/tbb/latest/env +++++ cd /opt/intel/oneapi/tbb/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/tbb/2021.6.0/env ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env +++ TBBROOT=/opt/intel/oneapi/tbb/2021.6.0/env/.. +++ TBB_TARGET_ARCH=intel64 +++ '[' -n '' ']' +++ for arg in "$@" +++ case "$arg" in +++ TBB_LIB_NAME=libtbb.so.12 +++ TBB_LIB_DIR=intel64/gcc4.8 +++ '[' -e /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8/libtbb.so.12 ']' +++ export TBBROOT ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8 ++++ path_is_now='/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../include /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../include ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/.. /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/.. ++++ path_is_now=/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=19 ++ for arg in "$@" +++ expr vpl=latest : '\(.*\)=.*' ++ arg_base=vpl +++ expr vpl=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vpl/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++ echo ':: vpl -- latest' :: vpl -- latest ++ . /opt/intel/oneapi/vpl/latest/env/vars.sh SETVARS_CALL=1 +++ _vars_this_script_name=vars.sh ++++ _vars_get_proc_name /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -n '' ']' ++++ script=/home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ++++ '[' -L /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh ']' ++++ basename -- /home/jenkins/workspace/branch_e3sm_test@tmp/durable-d3980ac2/script.sh +++ '[' vars.sh = script.sh ']' +++ vars_script_name= ++++ ps -p 520398 -o comm= +++ vars_script_shell=bash +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ vars_script_name=/opt/intel/oneapi/vpl/latest/env/vars.sh +++ '[' '' = /opt/intel/oneapi/vpl/latest/env/vars.sh ']' ++++ get_script_path /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vpl/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vpl/latest/env/vars.sh ']' +++++ command dirname -- /opt/intel/oneapi/vpl/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vpl/latest/env +++++ cd /opt/intel/oneapi/vpl/latest/env +++++ command pwd -P ++++ script_dir=/opt/intel/oneapi/vpl/2022.1.0/env ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/env +++ script_path=/opt/intel/oneapi/vpl/2022.1.0/env +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ cd /opt/intel/oneapi/vpl/2022.1.0/env/.. ++++ pwd +++ vpl_prefix=/opt/intel/oneapi/vpl/2022.1.0 +++ vpl_include=/opt/intel/oneapi/vpl/2022.1.0/include +++ vpl_lib=/opt/intel/oneapi/vpl/2022.1.0/lib +++ vpl_bin=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/include /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/include ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ CPATH=/opt/intel/oneapi/vpl/2022.1.0/include:/opt/intel/oneapi/tbb/2021.6.0/env/../include:/opt/intel/oneapi/mpi/2021.6.0//include:/opt/intel/oneapi/mkl/2022.1.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/ippcp/2021.6.0/include:/opt/intel/oneapi/ipp/2021.6.0/include:/opt/intel/oneapi/dpl/2021.7.0/linux/include:/opt/intel/oneapi/dpcpp-ct/2022.1.0/include:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/include:/opt/intel/oneapi/dev-utilities/2021.6.0/include:/opt/intel/oneapi/dal/2021.6.0/include:/opt/intel/oneapi/ccl/2021.6.0/include/cpu_gpu_dpcpp +++ export CPATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ LIBRARY_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/clck/2021.6.0/lib/intel64:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp +++ export LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/bin /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/bin ++++ path_is_now=/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ++++ '[' '' = /opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib ++++ path_is_now='/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ++++ '[' '' = '/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' ']' ++++ printf %s '/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ LD_LIBRARY_PATH='/opt/intel/oneapi/vpl/2022.1.0/lib:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.6.0//libfabric/lib:/opt/intel/oneapi/mpi/2021.6.0//lib/release:/opt/intel/oneapi/mpi/2021.6.0//lib:/opt/intel/oneapi/mkl/2022.1.0/lib/intel64:/opt/intel/oneapi/itac/2021.6.0/slib:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/ippcp/2021.6.0/lib/intel64:/opt/intel/oneapi/ipp/2021.6.0/lib/intel64:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/lib:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.6.0/dep/lib:/opt/intel/oneapi/dal/2021.6.0/lib/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/x64:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.1.0/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/ccl/2021.6.0/lib/cpu_gpu_dpcpp:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib:/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib:/usr/local/NETCDF-Fortran-4.5.3-ifort/lib:/usr/local/NETCDF-Fortran-4.5.3-pgi/lib:/usr/local/NETCDF-C-4.8.0-gfortran/lib:/usr/local/NETCDF-C-4.8.0-ifort/lib:/usr/local/NETCDF-C-4.8.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/opt/intel/oneapi/mkl/latest/lib/intel64:/usr/local/lib' +++ export LD_LIBRARY_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0 /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0 ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ CMAKE_PREFIX_PATH=/opt/intel/oneapi/vpl/2022.1.0:/opt/intel/oneapi/tbb/2021.6.0/env/..:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/cmake:/opt/intel/oneapi/dal/2021.6.0:/opt/intel/oneapi/compiler/2022.1.0/linux/IntelDPCPP +++ export CMAKE_PREFIX_PATH ++++ prepend_path /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ path_to_add=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig ++++ path_is_now=/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ++++ '[' '' = /opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: ']' ++++ printf %s /opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PKG_CONFIG_PATH ++ temp_var=20 ++ for arg in "$@" +++ expr vtune=latest : '\(.*\)=.*' ++ arg_base=vtune +++ expr vtune=latest : '.*=\(.*\)' ++ arg_verz=latest ++ arg_path=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ SETVARS_VARS_PATH=/opt/intel/oneapi/vtune/latest/env/vars.sh ++ export SETVARS_VARS_PATH ++ '[' exclude = latest ']' ++ '[' -r /opt/intel/oneapi/vtune/latest/env/vars.sh ']' ++ echo ':: vtune -- latest' :: vtune -- latest ++ . /opt/intel/oneapi/vtune/latest/env/vars.sh SETVARS_CALL=1 +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n '5.1.4(1)-release' ']' +++ return 0 +++ SCRIPT=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ get_product_dir /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script=/opt/intel/oneapi/vtune/latest/env/vars.sh ++++ '[' -L /opt/intel/oneapi/vtune/latest/env/vars.sh ']' +++++ dirname /opt/intel/oneapi/vtune/latest/env/vars.sh ++++ script_dir=/opt/intel/oneapi/vtune/latest/env +++++ cd /opt/intel/oneapi/vtune/latest/env +++++ pwd -P ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0/env +++++ dirname /opt/intel/oneapi/vtune/2022.3.0/env ++++ script_dir=/opt/intel/oneapi/vtune/2022.3.0 ++++ echo /opt/intel/oneapi/vtune/2022.3.0 +++ PRODUCT_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++++ uname +++ '[' Linux = Darwin ']' ++++ uname -m +++ '[' x86_64 = x86_64 ']' +++ BIN_DIR=bin64 +++ export PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ PKG_CONFIG_PATH=/opt/intel/oneapi/vtune/2022.3.0/include/pkgconfig/lib64:/opt/intel/oneapi/vpl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/tbb/2021.6.0/env/../lib/pkgconfig:/opt/intel/oneapi/mpi/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/mkl/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ippcp/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/inspector/2022.1.0/include/pkgconfig/lib64:/opt/intel/oneapi/dpl/2021.7.0/lib/pkgconfig:/opt/intel/oneapi/dnnl/2022.1.0/cpu_dpcpp_gpu_dpcpp/../lib/pkgconfig:/opt/intel/oneapi/dal/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/compiler/2022.1.0/lib/pkgconfig:/opt/intel/oneapi/ccl/2021.6.0/lib/pkgconfig:/opt/intel/oneapi/advisor/2022.1.0/include/pkgconfig/lib64: +++ export PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ PATH=/opt/intel/oneapi/vtune/2022.3.0/bin64:/opt/intel/oneapi/vpl/2022.1.0/bin:/opt/intel/oneapi/mpi/2021.6.0//libfabric/bin:/opt/intel/oneapi/mpi/2021.6.0//bin:/opt/intel/oneapi/mkl/2022.1.0/bin/intel64:/opt/intel/oneapi/itac/2021.6.0/bin:/opt/intel/oneapi/intelpython/latest/bin:/opt/intel/oneapi/intelpython/latest/condabin:/opt/intel/oneapi/inspector/2022.1.0/bin64:/opt/intel/oneapi/dpcpp-ct/2022.1.0/bin:/opt/intel/oneapi/dev-utilities/2021.6.0/bin:/opt/intel/oneapi/debugger/2021.6.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.1.0/linux/bin:/opt/intel/oneapi/clck/2021.6.0/bin/intel64:/opt/intel/oneapi/advisor/2022.1.0/bin64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/opt/rh/devtoolset-10/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/22.5/compilers/bin:/opt/intel/oneapi/compiler/2022.1.0/linux/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin +++ export DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ DIAGUTIL_PATH=/opt/intel/oneapi/vtune/2022.3.0/sys_check/vtune_sys_check.py:/opt/intel/oneapi/dpcpp-ct/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/debugger/2021.6.0/sys_check/debugger_sys_check.py:/opt/intel/oneapi/compiler/2022.1.0/sys_check/sys_check.sh:/opt/intel/oneapi/advisor/2022.1.0/sys_check/advisor_sys_check.py: +++ export VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_2022_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ export VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 +++ VTUNE_PROFILER_DIR=/opt/intel/oneapi/vtune/2022.3.0 ++ temp_var=21 ++ '[' 21 -eq 0 ']' ++ echo ':: oneAPI environment initialized ::' :: oneAPI environment initialized :: ++ echo ' ' ++ '[' 0 -ne 0 ']' ++ eval set -- ''\''--force'\'' \ ' +++ set -- --force ++ prep_for_exit 0 ++ script_return_code=0 ++ unset -v SETVARS_CALL ++ unset -v SETVARS_ARGS ++ unset -v SETVARS_VARS_PATH ++ '[' 0 = '' ']' ++ '[' 0 -eq 0 ']' ++ SETVARS_COMPLETED=1 ++ export SETVARS_COMPLETED ++ return 0 ++ return + bash -c 'export e3smSource=/home/jenkins/workspace/branch_e3sm_test; csh nightly_test/nightly_e3sm_scm_ARM97.csh' Compset longname is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/branch_e3sm_test/cime_config/allactive/config_pesall.xml Could not find machine match for 'nelson.localdomain' or 'nelson' Machine is nelson Pes setting: grid is a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Pes setting: compset is SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 16, 'NTASKS_LND': 16, 'NTASKS_ROF': 16, 'NTASKS_ICE': 16, 'NTASKS_OCN': 16, 'NTASKS_GLC': 16, 'NTASKS_WAV': 16, 'NTASKS_CPL': 16} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: SCAM_EAM%SCAM_ELM%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Components in compset are: ['eam', 'elm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp'] No charge_account info available, using value from PROJECT e3sm model version found: 4a895c8ce1 Batch_system_type is none Creating Case directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: Unknown Job Queue specified use --force to set /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/case_scripts/env_mach_specific.xml already exists, delete to replace Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/branch_e3sm_test/cime_config/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup 2023-06-29 18:34:37 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-06-29 18:34:38 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-06-29 18:34:38 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-06-29 18:34:38 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-06-29 18:34:38 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-06-29 18:34:38 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-06-29 18:34:38 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-06-29 18:34:38 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-06-29 18:34:38 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-06-29 18:34:38 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/case_scripts sharedlib_only is False model_only is False Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Generating component namelists as part of build 2023-06-29 18:34:41 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-06-29 18:34:41 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-06-29 18:34:41 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-06-29 18:34:41 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-06-29 18:34:42 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-06-29 18:34:42 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-06-29 18:34:42 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-06-29 18:34:42 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-06-29 18:34:42 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-06-29 18:34:42 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Building gptl with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/gptl.bldlog.230629-183441 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/mct.bldlog.230629-183441 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/pio.bldlog.230629-183441 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/csm_share.bldlog.230629-183441 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings Building kokkos with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/kokkos.bldlog.230629-183441 Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/build_scripts/buildlib.kokkos Configuring full e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/e3sm.bldlog.230629-183441 Calling cmake directly, see top of log file for specific call Building e3sm model with output to file /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/e3sm.bldlog.230629-183441 Calling make, see top of log file for specific call Total build time: 401.450614 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-06-29 18:41:23 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-06-29 18:41:23 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-06-29 18:41:23 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-06-29 18:41:23 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-06-29 18:41:23 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-06-29 18:41:23 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-06-29 18:41:23 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-06-29 18:41:23 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-06-29 18:41:23 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-06-29 18:41:23 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml Checking that inputdata is available as part of case submission Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/elm.input_data_list' Model elm no file specified for finidat Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/eam.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2023-06-29 18:41:24 CASE.RUN BEGINS HERE 2023-06-29 18:41:24 RUN_MODEL BEGINS HERE 2023-06-29 18:41:24 PRE_RUN_CHECK BEGINS HERE Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment NETCDF_FORTRAN_PATH=/usr/local/NETCDF-Fortran-4.5.3-gfortran Setting Environment NETCDF_C_PATH=/usr/local/NETCDF-C-4.8.0-gfortran Setting Environment LIB_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib Setting Environment INC_NETCDF=/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 2023-06-29 18:41:24 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/case_scripts 2023-06-29 18:41:24 atm Create namelist for component eam Calling /home/jenkins/workspace/branch_e3sm_test/components/eam/cime_config/buildnml 2023-06-29 18:41:24 lnd Create namelist for component elm Calling /home/jenkins/workspace/branch_e3sm_test/components/elm/cime_config/buildnml 2023-06-29 18:41:24 ice Create namelist for component cice Calling /home/jenkins/workspace/branch_e3sm_test/components/cice/cime_config/buildnml 2023-06-29 18:41:24 ocn Create namelist for component docn Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/cime_config/buildnml 2023-06-29 18:41:24 rof Create namelist for component srof Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/cime_config/buildnml 2023-06-29 18:41:24 glc Create namelist for component sglc Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/cime_config/buildnml 2023-06-29 18:41:24 wav Create namelist for component swav Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/cime_config/buildnml 2023-06-29 18:41:24 iac Create namelist for component siac Running /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/cime_config/buildnml 2023-06-29 18:41:24 esp Create namelist for component sesp Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/cime_config/buildnml 2023-06-29 18:41:24 cpl Create namelist for component drv Calling /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/cime_config/buildnml 2023-06-29 18:41:24 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2023-06-29 18:41:24 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/e3sm.exe >> e3sm.log.$LID 2>&1 2023-06-29 18:41:24 SAVE_PRERUN_PROVENANCE BEGINS HERE 2023-06-29 18:41:24 SAVE_PRERUN_PROVENANCE HAS FINISHED 2023-06-29 18:41:24 MODEL EXECUTION BEGINS HERE 2023-06-29 18:41:26 MODEL EXECUTION HAS FINISHED Exception from case_run: ERROR: RUN FAIL: Command '/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/build/e3sm.exe >> e3sm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_ARM97/run/e3sm.log.230629-184124 Submitted job case.run with id None ARM97 was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + gzip -d projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.230629-181200.gz + cat projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.230629-181200 Configuring with cmake cmd: /usr/bin/time -p cmake -DCIME_MODEL=e3sm -Dcompile_threaded=FALSE -DINSTALL_SHAREDPATH=/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct -DUSE_KOKKOS=TRUE -DCOMP_NAMES='cpl;eam;elm;cice;docn;srof;sglc;swav;siac;sesp' -DCASEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts" -DCASETOOLS="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools" -DCIMEROOT="/home/jenkins/workspace/branch_e3sm_test/cime" -DCOMP_INTERFACE="mct" -DCOMPILER="gnu" -DDEBUG="FALSE" -DEXEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build" -DINCROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lib/include" -DLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lib" -DMACH="nelson" -DMPILIB="mpich" -DNINST_VALUE="c1a1l1i1o1r1g1w1i1e1" -DOS="Linux" -DPIO_VERSION="2" -DSHAREDLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build" -DSMP_PRESENT="FALSE" -DUSE_ESMF_LIB="FALSE" -DUSE_MOAB="FALSE" -DCAM_CONFIG_OPTS="-phys default -scam -nlev 72 -clubb_sgs -nadv 29 -rad rrtmg -chem trop_mam3 -silent -nlev 72 -microphys mg2 -psubcols 4 -cppdefs '-DUWM_MISC -DSILHS'" -DCOMP_LND="elm" -DCOMPARE_TO_NUOPC="FALSE" -DUSE_TRILINOS="FALSE" -DUSE_ALBANY="FALSE" -DUSE_PETSC="FALSE" -DCMAKE_C_COMPILER_WORKS=1 -DCMAKE_CXX_COMPILER_WORKS=1 -DCMAKE_Fortran_COMPILER_WORKS=1 /home/jenkins/workspace/branch_e3sm_test/components -- The C compiler identification is GNU 8.4.0 -- The CXX compiler identification is GNU 10.3.0 -- The Fortran compiler identification is GNU 8.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 - skipped -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 - yes Found component atm model 'eam' -- Enabled Kokkos devices: SERIAL CMake Warning at /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfigCommon.cmake:29 (MESSAGE): The installed Kokkos configuration does not support CXX extensions. Forcing -DCMAKE_CXX_EXTENSIONS=Off Call Stack (most recent call first): /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfig.cmake:43 (INCLUDE) cmake/common_setup.cmake:251 (find_package) cmake/build_model.cmake:5 (include) cmake/atm/CMakeLists.txt:1 (build_model) Warning: Skipping repeated base filename rrtmg_lw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rad.f90 Warning: Skipping repeated base filename rrtmg_sw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_rad.f90 Warning: Skipping repeated base filename vrtmap.F90 for eam/src/utils/vrtmap.F90 Found component lnd model 'elm' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename accumulMod.F90 for elm/src/utils/accumulMod.F90 Found component ice model 'cice' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename ice_communicate.F90 for cice/src/mpi/ice_communicate.F90 Found component ocn model 'docn' -- Enabled Kokkos devices: SERIAL Found component rof model 'srof' -- Enabled Kokkos devices: SERIAL Found component glc model 'sglc' -- Enabled Kokkos devices: SERIAL Found component wav model 'swav' -- Enabled Kokkos devices: SERIAL Found component iac model 'siac' -- Enabled Kokkos devices: SERIAL Found component esp model 'sesp' -- Enabled Kokkos devices: SERIAL -- Enabled Kokkos devices: SERIAL -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CASETOOLS SHAREDLIBROOT SMP_PRESENT USE_MOAB -- Build files have been written to: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld real 1.33 user 0.85 sys 0.47 Building with cmd: /usr/bin/time -p make -j 4 /usr/bin/cmake -S/home/jenkins/workspace/branch_e3sm_test/components -B/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/CMakeFiles /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/CMakeFiles/genf90.dir/DependInfo.cmake --color= Scanning dependencies of target genf90 make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make[2]: Nothing to be done for 'CMakeFiles/genf90.dir/build'. make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 0%] Built target genf90 make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/depend make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/depend make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/depend make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice/CMakeFiles/ice.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn/CMakeFiles/ocn.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' Scanning dependencies of target ocn make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/build [ 0%] Generating buffer.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/buffer.F90 [ 1%] Generating restUtilMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/restUtilMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/restUtilMod.F90 make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o [ 1%] Generating physics_buffer.F90 Scanning dependencies of target ice [ 1%] Generating ncdio_pio.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/physics_buffer.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ncdio_pio.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/ncdio_pio.F90 make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_kinds_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o [ 1%] Generating dynVarMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/dynVarMod.F90 [ 1%] Generating subcol_utils.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_utils.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/subcol_utils.F90 [ 1%] Generating dynVarTimeInterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeInterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/CMakeFiles/atm.dir/DependInfo.cmake --color= [ 1%] Generating dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeUninterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/CMakeFiles/lnd.dir/DependInfo.cmake --color= Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o built in 0.103245 seconds Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o built in 0.174094 seconds [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_cpl_indices.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_shr_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_shr_mod.mod.stamp GNU [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o Scanning dependencies of target lnd make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 1%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o built in 0.172122 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_kinds_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_kinds_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_cpl_indices.mod cmake/ice/CMakeFiles/ice.dir/ice_cpl_indices.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o.provides.build [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_communicate.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o built in 0.117467 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o built in 0.188936 seconds [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_constants.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o [ 1%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o Scanning dependencies of target atm make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/build Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o built in 0.442727 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_comp_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o.provides.build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 1%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o built in 0.106253 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain_size.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90:25:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o built in 0.193511 seconds [ 2%] Building Fortran object 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/landunit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o built in 0.129365 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_fileunits.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o built in 0.205197 seconds Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o built in 0.217751 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/ocn_comp_mct.mod cmake/ocn/CMakeFiles/ocn.dir/ocn_comp_mct.mod.stamp GNU [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_logfile.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o [ 2%] Linking CXX static library libocn.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn && /usr/bin/cmake -P CMakeFiles/ocn.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn && /usr/bin/cmake -E cmake_link_script CMakeFiles/ocn.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libocn.a CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o Target libocn.a built in 0.004274 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libocn.a Target libocn.a built in 0.003440 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o built in 0.214037 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 2%] Built target ocn Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o built in 0.141242 seconds [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesConstantsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_scam.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o built in 0.229070 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffixed-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/mpishorthand.F -o CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o built in 0.115554 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_communicate.mod cmake/ice/CMakeFiles/ice.dir/ice_communicate.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_constants.mod cmake/ice/CMakeFiles/ice.dir/ice_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_domain_size.mod cmake/ice/CMakeFiles/ice.dir/ice_domain_size.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o built in 0.186702 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_fileunits.mod cmake/ice/CMakeFiles/ice.dir/ice_fileunits.mod.stamp GNU [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o built in 0.197934 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_broadcast.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/namelist_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o built in 0.249598 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_scam.mod cmake/ice/CMakeFiles/ice.dir/ice_scam.mod.stamp GNU [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ppgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o built in 0.192736 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o built in 0.216311 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. 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/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_atmo.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o built in 0.283991 seconds make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/rof /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof/CMakeFiles/rof.dir/DependInfo.cmake --color= Scanning dependencies of target rof make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 3%] Building Fortran object cmake/rof/CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI 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/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90 -o CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o built in 0.187828 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SpeciesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o built in 0.238711 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/infnan.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o Target CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o built in 0.143473 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/rof/rof_comp_mct.mod cmake/rof/CMakeFiles/rof.dir/rof_comp_mct.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o built in 0.229247 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o.provides.build [ 3%] Linking CXX static library librof.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof && /usr/bin/cmake -P CMakeFiles/rof.dir/cmake_clean_target.cmake /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof && /usr/bin/cmake -E cmake_link_script CMakeFiles/rof.dir/link.txt --verbose=1 /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o.provides.build python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc librof.a CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o.provides.build [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o Target librof.a built in 0.004009 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_exit.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib librof.a Target librof.a built in 0.002974 seconds /usr/bin/cmake -E touch cmake/rof/CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 3%] Built target rof /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_broadcast.mod cmake/ice/CMakeFiles/ice.dir/ice_broadcast.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o built in 0.205969 seconds make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc/CMakeFiles/glc.dir/DependInfo.cmake --color= Scanning dependencies of target glc make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/build [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varsur.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o [ 3%] Building Fortran object cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/glc/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90 -o CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o built in 0.224649 seconds Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o built in 0.114586 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_atmo.mod cmake/ice/CMakeFiles/ice.dir/ice_atmo.mod.stamp GNU [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_instance.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_exit.mod cmake/ice/CMakeFiles/ice.dir/ice_exit.mod.stamp GNU [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_calendar.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o Target CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o built in 0.138679 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/glc/glc_comp_mct.mod cmake/glc/CMakeFiles/glc.dir/glc_comp_mct.mod.stamp GNU [ 3%] Linking CXX static library libglc.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc && /usr/bin/cmake -P CMakeFiles/glc.dir/cmake_clean_target.cmake Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o built in 0.184671 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc && /usr/bin/cmake -E cmake_link_script CMakeFiles/glc.dir/link.txt --verbose=1 [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libglc.a CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o Target libglc.a built in 0.004277 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libglc.a Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o built in 0.159036 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_blocks.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o built in 0.241100 seconds Target libglc.a built in 0.003070 seconds /usr/bin/cmake -E touch cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o.provides.build [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dycore.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 3%] Built target glc [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/thread_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o built in 0.190690 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_nlUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o built in 0.225934 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_spacecurve.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o built in 0.268132 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o built in 0.249238 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/string_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/params_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o built in 0.175198 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNBeTRIndicatorMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o built in 0.218501 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o built in 0.225020 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/ll_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o built in 0.284112 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o built in 0.394123 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_calendar.mod cmake/ice/CMakeFiles/ice.dir/ice_calendar.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_blocks.mod cmake/ice/CMakeFiles/ice.dir/ice_blocks.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_spacecurve.mod cmake/ice/CMakeFiles/ice.dir/ice_spacecurve.mod.stamp GNU [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_work.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o built in 0.186651 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o.provides.build [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o built in 0.117513 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o built in 0.236551 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o built in 0.208008 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/domain_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability_tools.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sort_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o built in 0.131201 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o built in 0.177243 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_work.mod cmake/ice/CMakeFiles/ice.dir/ice_work.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability_tools.mod cmake/ice/CMakeFiles/ice.dir/ice_probability_tools.mod.stamp GNU [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o.provides.build [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_distribution.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o built in 0.243130 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o built in 0.259363 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/m_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/SimpleMathMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o built in 0.195346 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/pspect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o built in 0.227182 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o built in 0.247119 seconds make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav/CMakeFiles/wav.dir/DependInfo.cmake --color= [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o Scanning dependencies of target wav make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 3%] Building Fortran object cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/wav/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90 -o CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o built in 0.241439 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/chem_mods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o built in 0.188655 seconds Target CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o built in 0.150871 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/wav/wav_comp_mct.mod cmake/wav/CMakeFiles/wav.dir/wav_comp_mct.mod.stamp GNU [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/topounit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o [ 5%] Linking CXX static library libwav.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav && /usr/bin/cmake -P CMakeFiles/wav.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav && /usr/bin/cmake -E cmake_link_script CMakeFiles/wav.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libwav.a CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o Target libwav.a built in 0.004286 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libwav.a Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o built in 0.215880 seconds Target libwav.a built in 0.002913 seconds /usr/bin/cmake -E touch cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o.provides.build [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/sslt_sections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 5%] Built target wav [ 6%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU 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/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90:32:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o built in 0.173998 seconds [ 6%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o built in 0.294097 seconds [ 6%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/srf_field_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o built in 0.344749 seconds [ 7%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o built in 0.240199 seconds [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o built in 0.553564 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_global_reductions.mod cmake/ice/CMakeFiles/ice.dir/ice_global_reductions.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o built in 0.317290 seconds [ 7%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o [ 7%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o built in 0.237329 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o built in 0.343868 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90:61:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o built in 0.264684 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/error_function.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o built in 0.213210 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o built in 0.214466 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_methods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o built in 0.196810 seconds Target CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o built in 0.295050 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o built in 0.306319 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o built in 0.189194 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o built in 0.204275 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o built in 0.242787 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o built in 0.191413 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o.provides.build [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_trislv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o built in 0.250118 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o built in 0.215123 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_zadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o built in 0.206459 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o built in 0.295817 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o built in 0.251470 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/m_sad_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o built in 0.216815 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jpl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o built in 0.212203 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o built in 0.253533 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o built in 0.263719 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o built in 0.196649 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/sv_decomp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o built in 0.190737 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o built in 2.245401 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_boundary.mod cmake/ice/CMakeFiles/ice.dir/ice_boundary.mod.stamp GNU [ 9%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o built in 0.253780 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o built in 0.197825 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o built in 0.333531 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cmparray_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o built in 0.237338 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_domain.mod cmake/ice/CMakeFiles/ice.dir/ice_domain.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o built in 0.213084 seconds [ 10%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_gather_scatter.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o built in 0.246246 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o built in 0.234926 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o built in 0.399629 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbtpar.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o built in 0.253506 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o built in 0.239437 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o built in 0.291774 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o built in 0.232887 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o built in 0.210361 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o built in 0.842728 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o [ 11%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_state.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o built in 0.264827 seconds [ 11%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_pio.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o built in 0.210959 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o built in 0.190405 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o built in 0.190032 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o built in 0.197949 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_gather_scatter.mod cmake/ice/CMakeFiles/ice.dir/ice_gather_scatter.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_state.mod cmake/ice/CMakeFiles/ice.dir/ice_state.mod.stamp GNU [ 11%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_timers.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o built in 0.178456 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o built in 0.264847 seconds [ 11%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o built in 0.206381 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o built in 0.130543 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o built in 0.227507 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o built in 0.184226 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o built in 0.202961 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o built in 0.465224 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_pio.mod cmake/ice/CMakeFiles/ice.dir/ice_pio.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o built in 0.236972 seconds [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_read_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_flux.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o built in 0.238366 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o built in 0.184914 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o built in 0.167114 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o built in 0.190321 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o built in 0.364660 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o built in 0.412757 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_timers.mod cmake/ice/CMakeFiles/ice.dir/ice_timers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_itd.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o built in 0.171906 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o.provides.build [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_read_write.mod cmake/ice/CMakeFiles/ice.dir/ice_read_write.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o built in 0.211216 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_flux.mod cmake/ice/CMakeFiles/ice.dir/ice_flux.mod.stamp GNU [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_mechred.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o built in 0.228228 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o built in 0.190976 seconds [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o built in 0.220819 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o built in 0.198246 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o built in 0.312659 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o built in 0.487722 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o.provides.build [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o built in 0.227115 seconds [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o built in 0.172224 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o built in 0.189825 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o built in 0.253620 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o built in 0.262063 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_mechred.mod cmake/ice/CMakeFiles/ice.dir/ice_mechred.mod.stamp GNU [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability.mod cmake/ice/CMakeFiles/ice.dir/ice_probability.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o built in 0.264313 seconds [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_grid.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o built in 0.197191 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o built in 0.179720 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o built in 0.246736 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o built in 0.187875 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o built in 0.257751 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o built in 0.201757 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o.provides.build [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o built in 0.182896 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o built in 0.252851 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o built in 0.642585 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_grid.mod cmake/ice/CMakeFiles/ice.dir/ice_grid.mod.stamp GNU [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_dyn_evp.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o built in 0.175376 seconds [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_ocean.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o built in 0.232474 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o built in 0.205207 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o built in 0.209608 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o built in 0.166261 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o built in 0.232993 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o built in 0.201893 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o built in 0.657290 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o built in 0.182212 seconds [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_remap.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o built in 0.257003 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o built in 0.242265 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o built in 0.177384 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o.provides.build [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o built in 0.186992 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_dyn_evp.mod cmake/ice/CMakeFiles/ice.dir/ice_dyn_evp.mod.stamp GNU [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o built in 0.219879 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o built in 0.206916 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_ocean.mod cmake/ice/CMakeFiles/ice.dir/ice_ocean.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o built in 0.187493 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o.provides.build [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o built in 0.235728 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o built in 0.182359 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o built in 0.178439 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o built in 0.169157 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o built in 0.248030 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o built in 0.248472 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o built in 1.172350 seconds [ 16%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_restart.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o built in 0.209074 seconds [ 16%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_prescribed_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o built in 0.203805 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o built in 0.213531 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o built in 0.210123 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o built in 0.238984 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o built in 0.354294 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o built in 0.160159 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_remap.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_remap.mod.stamp GNU [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o built in 0.215817 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_prescribed_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_prescribed_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o built in 0.192709 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o [ 17%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_driver.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o built in 0.713977 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o built in 0.238049 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o built in 0.172523 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o built in 0.165455 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o built in 0.220740 seconds make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac/CMakeFiles/iac.dir/DependInfo.cmake --color= Scanning dependencies of target iac make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 17%] Building Fortran object cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/iac/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.siac -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90 -o CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o built in 0.261578 seconds [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o built in 0.195656 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_precision.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varctl.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varctl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/spmdmod.mod cmake/lnd/CMakeFiles/lnd.dir/spmdmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunit_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/landunit_varcon.mod.stamp GNU [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/fileutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o Target CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o built in 0.163689 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/iac/iac_comp_mct.mod cmake/iac/CMakeFiles/iac.dir/iac_comp_mct.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o built in 0.635673 seconds [ 18%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_import_export.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o [ 18%] Linking CXX static library libiac.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac && /usr/bin/cmake -P CMakeFiles/iac.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac && /usr/bin/cmake -E cmake_link_script CMakeFiles/iac.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libiac.a CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o Target libiac.a built in 0.004378 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libiac.a Target libiac.a built in 0.004557 seconds /usr/bin/cmake -E touch cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o built in 0.296919 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/error_code.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o [ 18%] Built target iac make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp/CMakeFiles/esp.dir/DependInfo.cmake --color= Scanning dependencies of target esp make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/build Target CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o built in 0.287188 seconds make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesconstantsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesconstantsmod.mod.stamp GNU [ 19%] Building Fortran object cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/esp/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90 -o CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_constants.mod cmake/lnd/CMakeFiles/lnd.dir/betr_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_ctrl.mod cmake/lnd/CMakeFiles/lnd.dir/betr_ctrl.mod.stamp GNU [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o Target CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o built in 0.167569 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/esp/esp_comp_mct.mod cmake/esp/CMakeFiles/esp.dir/esp_comp_mct.mod.stamp GNU [ 20%] Linking CXX static library libesp.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp && /usr/bin/cmake -P CMakeFiles/esp.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp && /usr/bin/cmake -E cmake_link_script CMakeFiles/esp.dir/link.txt --verbose=1 Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o built in 0.471115 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o built in 0.310406 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libesp.a CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o.provides.build 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/model_flags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_restart.mod cmake/ice/CMakeFiles/ice.dir/ice_restart.mod.stamp GNU Target libesp.a built in 0.004366 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libesp.a Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o built in 0.263072 seconds [ 20%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_vertical.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_kind_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_kind_mod.mod.stamp GNU Target libesp.a built in 0.005051 seconds /usr/bin/cmake -E touch cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/speciesmod.mod cmake/lnd/CMakeFiles/lnd.dir/speciesmod.mod.stamp GNU make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varsur.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varsur.mod.stamp GNU [ 20%] Built target esp [ 21%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIntegratorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o [ 21%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_FY.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o built in 0.286901 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o built in 0.413884 seconds [ 21%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history_fields.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o [ 21%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameter_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o built in 0.346836 seconds [ 21%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIODimensionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o built in 0.227328 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_lvl.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o built in 0.301011 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_interfaces.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o built in 0.279176 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurvemod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurvemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_nlutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_nlutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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-I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o built in 0.271540 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_meltpond.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o built in 0.242638 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o built in 0.361984 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/input_names.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o built in 0.315250 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_driver.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_driver.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o built in 1.389280 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_esmf.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mt95.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o built in 0.265983 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gbetrtype.mod cmake/lnd/CMakeFiles/lnd.dir/gbetrtype.mod.stamp GNU [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o built in 0.305549 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pbl_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o built in 0.153730 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_import_export.mod cmake/ice/CMakeFiles/ice.dir/ice_import_export.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o.provides.build [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_aerosol.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o built in 0.270426 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o built in 0.331014 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/trb_mtn_stress.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o built in 0.249610 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_landvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_landvarcontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrhistvartype.mod cmake/lnd/CMakeFiles/lnd.dir/betrhistvartype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/simplemathmod.mod cmake/lnd/CMakeFiles/lnd.dir/simplemathmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o built in 0.742256 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_pftvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_pftvarcontype.mod.stamp GNU [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o built in 0.327170 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o built in 0.599422 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_age.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o built in 0.322594 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vdiff_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o built in 0.260530 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o built in 0.377538 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounit_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/topounit_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varorb.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varorb.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o built in 0.281458 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_vertical.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_vertical.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelconstants.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelconstants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_fy.mod cmake/ice/CMakeFiles/ice.dir/ice_fy.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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cmake/lnd/emi_landunit_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_landunit_constants.mod.stamp GNU [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilhydrologytype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilhydrologytype_constants.mod.stamp GNU 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cmake/lnd/mpp_bounds.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_bounds.mod.stamp GNU [ 23%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_diagnostics.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_varctl.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_varctl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_varpar.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_varpar.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o.provides.build [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/elm_cpl_indices.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o built in 0.420219 seconds [ 23%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_finalizeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o built in 0.280062 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o built in 0.312175 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o built in 0.254506 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o.provides.build [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelptmmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelptmmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/eoswatermod.mod cmake/lnd/CMakeFiles/lnd.dir/eoswatermod.mod.stamp GNU /usr/bin/cmake -E 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_history_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/code_timer_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o built in 1.339525 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_mesh_utils.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_mesh_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_shr_log_mod.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_shr_log_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_diagnostics.mod cmake/ice/CMakeFiles/ice.dir/ice_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o.provides.build /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90:26:0: #include <mpif.h> ! mpi library include file Warning: extra tokens at end of #include directive [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_forcing.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o built in 0.242579 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o built in 0.283074 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnrichardsodepressuretype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnrichardsodepressuretype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o.provides.build [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o.provides.build [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o built in 0.555900 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/quicksort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o built in 0.211096 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o.provides.build /usr/bin/cmake -E touch 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o built in 0.309003 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o.provides.build [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/xpavg_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o.provides.build [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/getdatetime.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o built in 0.320013 seconds [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_orbital.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o built in 0.139930 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o built in 0.196693 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/initcom.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o built in 0.256526 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o.provides.build [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o built in 0.244629 seconds Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o built in 0.276212 seconds [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/trunc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o built in 1.397038 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fileutils.mod cmake/lnd/CMakeFiles/lnd.dir/fileutils.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o built in 0.412819 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesGlobals.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParametersMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o built in 0.172607 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history_write.mod cmake/ice/CMakeFiles/ice.dir/ice_history_write.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_forcing.mod cmake/ice/CMakeFiles/ice.dir/ice_forcing.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_orbital.mod cmake/ice/CMakeFiles/ice.dir/ice_orbital.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o.provides.build [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o built in 0.305181 seconds [ 24%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o built in 0.250479 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatustype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatustype.mod.stamp GNU [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o built in 0.352259 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o built in 0.253625 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o built in 0.629849 seconds [ 24%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_slmm.cpp Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o built in 0.251054 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesintegratorsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesintegratorsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesiodimensionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesiodimensionsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o.provides.build [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp: In static member function ‘static homme::compose::QLT<ES>::Int homme::compose::QLT<ES>::solve(homme::compose::QLT<ES>::Int, const homme::compose::QLT<ES>::VerticalLevelsData&, const Real&)’: /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp:5141:3: warning: no return statement in function returning non-void [-Wreturn-type] 5141 | } | ^ Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o built in 0.304312 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o built in 0.370946 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o built in 1.715507 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_restoring.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o built in 0.337467 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o built in 0.398854 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_shortwave.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o built in 0.340520 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o built in 0.364429 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o built in 0.350314 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_const_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_const_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_utils.mod cmake/lnd/CMakeFiles/lnd.dir/betr_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/func_data_type_mod.mod cmake/lnd/CMakeFiles/lnd.dir/func_data_type_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/somstatevarupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/somstatevarupdatemod.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o built in 1.184262 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history.mod cmake/ice/CMakeFiles/ice.dir/ice_history.mod.stamp GNU [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_restoring.mod cmake/ice/CMakeFiles/ice.dir/ice_restoring.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_shortwave.mod cmake/ice/CMakeFiles/ice.dir/ice_shortwave.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o.provides.build [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_init.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o built in 0.318398 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o built in 0.253951 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/btridiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/btridiagonalmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurveclapphornberg1978mod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurveclapphornberg1978mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o built in 0.285285 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusfluxrecvtype.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o built in 1.589039 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o built in 0.322894 seconds [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_step_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o built in 5.785423 seconds [ 26%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_test.cpp Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o built in 0.358003 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o built in 0.354841 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o built in 0.252540 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o built in 1.224090 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_init.mod cmake/ice/CMakeFiles/ice.dir/ice_init.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/cice_runmod.mod cmake/ice/CMakeFiles/ice.dir/cice_runmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_step_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_step_mod.mod.stamp GNU /usr/bin/cmake -E touch 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o built in 0.318769 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_abortutils.mod cmake/atm/CMakeFiles/atm.dir/cam_abortutils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_logfile.mod cmake/atm/CMakeFiles/atm.dir/cam_logfile.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o.provides.build [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o.provides.build [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/drydep_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o built in 0.252326 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o built in 0.288267 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/infnan.mod cmake/atm/CMakeFiles/atm.dir/infnan.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o built in 0.331700 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_instance.mod cmake/atm/CMakeFiles/atm.dir/cam_instance.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dycore.mod cmake/atm/CMakeFiles/atm.dir/dycore.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o built in 1.096883 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/cice_initmod.mod cmake/ice/CMakeFiles/ice.dir/cice_initmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o.provides.build [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/error_messages.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o [ 27%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_mct.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o built in 0.260886 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/interpolate_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o built in 0.377930 seconds Target CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o built in 0.336694 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o built in 0.229564 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/kinds.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o built in 0.494423 seconds Target CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o built in 0.628978 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/column_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/column_varcon.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/buffer.F90 -o CMakeFiles/atm.dir/buffer.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o built in 0.629385 seconds [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o built in 0.324289 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonstaterecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonstaterecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenstaterecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenstaterecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusstaterecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_phosphorusstaterecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/betr_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantnutkineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantnutkineticsmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o built in 0.387684 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radconstants.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o built in 0.309770 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_regression_module.mod cmake/lnd/CMakeFiles/lnd.dir/betr_regression_module.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o built in 0.669985 seconds Target 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-DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshydrowtfmod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshydrowtfmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateslittermod.mod cmake/lnd/CMakeFiles/lnd.dir/fateslittermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesutilsmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o built in 0.278603 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtgenericmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtgenericmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_mpi_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_mpi_mod.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o built in 0.369232 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o built in 0.333473 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o built in 0.433867 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o built in 0.340011 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_factor.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_factor.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_solve.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_solve.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o built in 0.324179 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_negtrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o built in 0.331819 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_trislv.mod cmake/atm/CMakeFiles/atm.dir/mo_trislv.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_inter.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o built in 0.341813 seconds Target CMakeFiles/atm.dir/buffer.F90.o built in 2.180548 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_schu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_calcoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o built in 0.742809 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o built in 0.311261 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_zadj.mod cmake/atm/CMakeFiles/atm.dir/mo_zadj.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o built in 0.410645 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_sad_data.mod cmake/atm/CMakeFiles/atm.dir/m_sad_data.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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[ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spehox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jpl.mod cmake/atm/CMakeFiles/atm.dir/mo_jpl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_rxt_rates_conv.mod cmake/atm/CMakeFiles/atm.dir/mo_rxt_rates_conv.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_heatnirco2.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o built in 0.345191 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeofluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeofluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeophysinputtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeophysinputtype.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o built in 0.319096 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sv_decomp.mod cmake/atm/CMakeFiles/atm.dir/sv_decomp.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o built in 0.327917 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o.provides.build [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_rxt_id.mod cmake/atm/CMakeFiles/atm.dir/m_rxt_id.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o built in 0.290426 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o.provides.build [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg14.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg14.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg15.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg15.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_kg16.mod cmake/atm/CMakeFiles/atm.dir/rrlw_kg16.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_tbl.mod cmake/atm/CMakeFiles/atm.dir/rrlw_tbl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_ref.mod cmake/atm/CMakeFiles/atm.dir/rrlw_ref.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_con.mod cmake/atm/CMakeFiles/atm.dir/rrsw_con.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/GridcellType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o built in 1.392267 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_vsn.mod cmake/atm/CMakeFiles/atm.dir/rrsw_vsn.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o built in 0.321151 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o built in 0.383772 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o built in 0.359998 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o built in 0.306532 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o built in 0.354645 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o built in 0.319463 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_cld.mod cmake/atm/CMakeFiles/atm.dir/rrsw_cld.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o built in 0.306317 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/qsatmod.mod cmake/lnd/CMakeFiles/lnd.dir/qsatmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o.provides.build /usr/bin/cmake -E touch 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/ncdio_pio.F90 -o CMakeFiles/lnd.dir/ncdio_pio.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o built in 0.307273 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshydraulicsmemmod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshydraulicsmemmod.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNDecompCascadeConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o built in 0.320637 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o built in 0.318424 seconds [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o built in 0.260395 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o built in 0.331714 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_sys_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_sys_mod.mod.stamp GNU [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeCon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o built in 0.303064 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o built in 0.263972 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o built in 0.303326 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PlantMicKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o built in 0.431286 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o built in 0.297475 seconds [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o built in 0.355827 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_bgcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o built in 0.257297 seconds Target CMakeFiles/lnd.dir/ncdio_pio.F90.o built in 1.270431 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_thType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/DaylengthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o built in 0.295660 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o built in 0.284678 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnTemplateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o built in 0.462952 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPriorWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o built in 0.303868 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o built in 0.274072 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynEDMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o built in 0.284644 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o built in 0.292661 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o built in 0.268022 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o built in 0.308284 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o built in 0.322737 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o built in 0.308411 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_tbl.mod cmake/atm/CMakeFiles/atm.dir/rrsw_tbl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_ref.mod cmake/atm/CMakeFiles/atm.dir/rrsw_ref.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/GetGlobalValuesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o built in 0.291554 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_vrtqdr.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_vrtqdr.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_precision.mod cmake/atm/CMakeFiles/atm.dir/clubb_precision.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_code.mod cmake/atm/CMakeFiles/atm.dir/error_code.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_flags.mod cmake/atm/CMakeFiles/atm.dir/model_flags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameter_indices.mod cmake/atm/CMakeFiles/atm.dir/parameter_indices.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o built in 0.351418 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ncdio_pio.mod cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o built in 0.341317 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lapack_interfaces.mod cmake/atm/CMakeFiles/atm.dir/lapack_interfaces.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stat_file_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/penta_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o built in 0.321702 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/tridiag_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o built in 0.324203 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/endian.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o built in 2.331719 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDTypesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o built in 0.415915 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_names.mod cmake/atm/CMakeFiles/atm.dir/input_names.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mt95.mod cmake/atm/CMakeFiles/atm.dir/mt95.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pbl_utils.mod cmake/atm/CMakeFiles/atm.dir/pbl_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/trb_mtn_stress.mod cmake/atm/CMakeFiles/atm.dir/trb_mtn_stress.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_utils.mod cmake/atm/CMakeFiles/atm.dir/gw_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vdiff_lu_solver.mod cmake/atm/CMakeFiles/atm.dir/vdiff_lu_solver.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_utils.mod cmake/atm/CMakeFiles/atm.dir/physics_utils.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg1_5.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o built in 0.401943 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_data.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_data.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o built in 0.318538 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_arrays.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/math_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o built in 0.590251 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cndecompcascadecontype.mod cmake/lnd/CMakeFiles/lnd.dir/cndecompcascadecontype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o built in 0.301459 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/parameters_silhs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o built in 0.334951 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakecon.mod cmake/lnd/CMakeFiles/lnd.dir/lakecon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tridiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/tridiagonalmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantmickineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantmickineticsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/babortutils.mod cmake/lnd/CMakeFiles/lnd.dir/babortutils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_bgctype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_bgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_thtype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_thtype.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initVerticalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o built in 0.345584 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian 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/usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/getglobalvaluesmod.mod cmake/lnd/CMakeFiles/lnd.dir/getglobalvaluesmod.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/restUtilMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/gauaw_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o Target CMakeFiles/lnd.dir/restUtilMod.F90.o built in 0.669469 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o built in 0.330365 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/srchutil.mod cmake/atm/CMakeFiles/atm.dir/srchutil.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o built in 0.324543 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o built in 0.394623 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/scyc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/abortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90:1382:0: list = trim(l1)//":"//trim(list) Warning: ‘__builtin_memset’ specified size between 9223372036854775808 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o built in 0.586968 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restutilmod.mod cmake/lnd/CMakeFiles/lnd.dir/restutilmod.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o built in 0.267164 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o built in 0.309148 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o.provides.build /usr/bin/cmake -E touch 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o built in 0.890125 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o built in 0.467878 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_timemod.mod cmake/lnd/CMakeFiles/lnd.dir/betr_timemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_datatype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_datatype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o built in 0.402830 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_string_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_string_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/restUtilMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/abortutils.mod cmake/lnd/CMakeFiles/lnd.dir/abortutils.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_time_manager.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/marsaglia.mod cmake/atm/CMakeFiles/atm.dir/marsaglia.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/quicksort.mod cmake/atm/CMakeFiles/atm.dir/quicksort.mod.stamp GNU [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/sgexx.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o built in 0.466824 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinterfacetypesmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinterfacetypesmod.mod.stamp GNU [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o built in 0.650299 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o built in 0.359315 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CH4varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o built in 0.271841 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mathfuncmod.mod cmake/lnd/CMakeFiles/lnd.dir/mathfuncmod.mod.stamp GNU [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o built in 0.394788 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/soilorder_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o built in 1.679799 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanParamsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o built in 0.303941 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParametersInterface.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o built in 2.453940 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/xpavg_mod.mod cmake/atm/CMakeFiles/atm.dir/xpavg_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o built in 0.456069 seconds [ 35%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/apex_subs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/paramUtilMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o built in 1.158973 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o built in 0.361841 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o built in 0.311689 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o built in 0.504156 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/ChecksBalancesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o built in 1.066721 seconds [ 35%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/msise00.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o built in 0.320564 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/FuncPedotransferMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o built in 0.855225 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o built in 0.271157 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/quadraticMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/organicFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o built in 0.785851 seconds [ 35%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o built in 0.247599 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SharedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o built in 0.276334 seconds [ 35%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cpslec.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o built in 0.301693 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrtracertype.mod cmake/lnd/CMakeFiles/lnd.dir/betrtracertype.mod.stamp GNU [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o built in 0.300601 seconds [ 35%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/bnddyi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o built in 0.301110 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o built in 0.313208 seconds [ 35%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/wrap_mpi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o built in 0.379451 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/kineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/kineticsmod.mod.stamp GNU [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o built in 0.536464 seconds [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/fft99.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o built in 0.506401 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o built in 0.637779 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/units.mod cmake/atm/CMakeFiles/atm.dir/units.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/drydep_mod.mod cmake/atm/CMakeFiles/atm.dir/drydep_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_messages.mod cmake/atm/CMakeFiles/atm.dir/error_messages.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolate_data.mod cmake/atm/CMakeFiles/atm.dir/interpolate_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/kinds.mod cmake/atm/CMakeFiles/atm.dir/kinds.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wrap_nf.mod cmake/atm/CMakeFiles/atm.dir/wrap_nf.mod.stamp GNU [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tracname.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o built in 0.320163 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/buffer.mod 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/usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_inter.mod cmake/atm/CMakeFiles/atm.dir/mo_inter.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_schu.mod cmake/atm/CMakeFiles/atm.dir/mo_schu.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_calcoe.mod cmake/atm/CMakeFiles/atm.dir/mo_calcoe.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_phtadj.mod cmake/atm/CMakeFiles/atm.dir/mo_phtadj.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spehox.mod cmake/atm/CMakeFiles/atm.dir/spehox.mod.stamp GNU [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o built in 0.299300 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_heatnirco2.mod cmake/atm/CMakeFiles/atm.dir/mo_heatnirco2.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o built in 1.189689 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o built in 0.473734 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o built in 0.337059 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o built in 0.274695 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o built in 0.624007 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ChemStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o built in 0.398058 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o built in 0.270209 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MEGANFactorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o built in 0.267484 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/LSparseMatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o built in 0.400966 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdGathScatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o built in 0.992000 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o built in 0.358541 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainLateralMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o built in 0.256627 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o built in 0.316643 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o built in 0.465017 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initInterp.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o built in 0.293780 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o built in 0.362081 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o.provides.build [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o built in 0.935446 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o.provides.build [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ColumnMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o built in 0.255532 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o built in 0.425557 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o built in 0.332497 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/LandunitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o built in 0.435956 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_reftra.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_reftra.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o built in 0.442182 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/array_index.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o built in 0.322087 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/PatchMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o built in 0.288808 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/constants_clubb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o built in 0.278104 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clm_time_manager.mod cmake/lnd/CMakeFiles/lnd.dir/clm_time_manager.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/pftvarcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounittype.mod cmake/lnd/CMakeFiles/lnd.dir/topounittype.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/AnnualFluxDribbler.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o built in 0.308659 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_model.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vrtmap_mod.mod cmake/atm/CMakeFiles/atm.dir/vrtmap_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scyc.mod cmake/atm/CMakeFiles/atm.dir/scyc.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o built in 0.358932 seconds /usr/bin/cmake -E touch 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/paramutilmod.mod cmake/lnd/CMakeFiles/lnd.dir/paramutilmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o.provides.build [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_cldprop.mod.stamp GNU [ 40%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE 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CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o built in 1.068921 seconds [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire/SFParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o built in 0.493511 seconds [ 40%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o built in 0.354497 seconds [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynTimeInfoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o built in 0.925619 seconds [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o built in 0.604166 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o built in 0.332986 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edaccumulatefluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/edaccumulatefluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtallometriccarbonmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtallometriccarbonmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtallometriccnpmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtallometriccnpmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/checksbalancesmod.mod cmake/lnd/CMakeFiles/lnd.dir/checksbalancesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/funcpedotransfermod.mod cmake/lnd/CMakeFiles/lnd.dir/funcpedotransfermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/quadraticmod.mod cmake/lnd/CMakeFiles/lnd.dir/quadraticmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/organicfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/organicfilemod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o built in 0.353637 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o.provides.build [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/RootBiophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sharedparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/sharedparamsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgridcontrolmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgridcontrolmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpindextype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpindextype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o.provides.build [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sgexx.mod cmake/atm/CMakeFiles/atm.dir/sgexx.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/buffer.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o built in 0.307942 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerboundarycondtype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerboundarycondtype.mod.stamp GNU [ 40%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/accumulMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridAveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o built in 12.547593 seconds [ 40%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/spmd_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/spmd_utils.F90:53:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o built in 0.498752 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualfluxdribbler.mod cmake/lnd/CMakeFiles/lnd.dir/annualfluxdribbler.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationpropertiestype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationpropertiestype.mod.stamp GNU [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o built in 0.573912 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_mod.mod cmake/atm/CMakeFiles/atm.dir/time_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tracname.mod cmake/atm/CMakeFiles/atm.dir/mo_tracname.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_setrxt.mod.stamp GNU [ 40%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o built in 0.351136 seconds [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o built in 1.026746 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtinitparamsfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtinitparamsfatesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sfparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/sfparamsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyntimeinfomod.mod cmake/lnd/CMakeFiles/lnd.dir/dyntimeinfomod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfrdutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfrdutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/rootbiophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/rootbiophysmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o built in 0.354561 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o.provides.build [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o.provides.build [ 41%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o built in 0.273293 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpcompettype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpcompettype.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o built in 0.302787 seconds [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o built in 0.400607 seconds [ 42%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o built in 0.300328 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/filtermod.mod cmake/lnd/CMakeFiles/lnd.dir/filtermod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o built in 0.636213 seconds [ 42%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o built in 0.483996 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o built in 0.796458 seconds [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o built in 0.266591 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbalancemod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbalancemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilordercontype.mod cmake/lnd/CMakeFiles/lnd.dir/soilordercontype.mod.stamp GNU [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ComputeSeedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o built in 0.336382 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o built in 1.296608 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o built in 0.573400 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o built in 0.286287 seconds [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o built in 1.007403 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o built in 0.854659 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_setcoef.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_setcoef.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprmc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprop.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_taumol.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_taumol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/array_index.mod cmake/atm/CMakeFiles/atm.dir/array_index.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constants_clubb.mod cmake/atm/CMakeFiles/atm.dir/constants_clubb.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o built in 0.284323 seconds [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o built in 0.266059 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o built in 0.343451 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o built in 1.908018 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o built in 0.268308 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o built in 0.296167 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o built in 0.273180 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o built in 0.327927 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o built in 0.303155 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initsubgridmod.mod cmake/lnd/CMakeFiles/lnd.dir/initsubgridmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridrestmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridrestmod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o built in 0.363691 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o.provides.build /usr/bin/cmake -E touch 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o built in 0.369442 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o.provides.build [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/T_in_K_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o /usr/bin/cmake -E touch 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cmake/lnd/subgridavemod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridavemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edparamsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessynchronizedparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessynchronizedparamsmod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o built in 0.326754 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_wrap.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o built in 0.292260 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o built in 1.024053 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpforctype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpforctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/odemod.mod cmake/lnd/CMakeFiles/lnd.dir/odemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantsoilbgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantsoilbgcmod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_pflotranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o built in 0.288386 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/transportmod.mod cmake/lnd/CMakeFiles/lnd.dir/transportmod.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o built in 0.576435 seconds [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_tunable.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o built in 0.311941 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o built in 0.329485 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o built in 0.337772 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bhistfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/bhistfilemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/computeseedmod.mod cmake/lnd/CMakeFiles/lnd.dir/computeseedmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompinitmod.mod 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/index_mapping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfrdmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfrdmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o.provides.build /usr/bin/cmake -E touch 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/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o built in 0.317482 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o.provides.build [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/histFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_semi_implicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o built in 0.311541 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDPftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o built in 10.976687 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_roots.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o built in 0.361672 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/LY93_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o built in 0.350799 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o built in 1.227222 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynfilemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessizeagetypeindicesmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessizeagetypeindicesmod.mod.stamp GNU [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o built in 0.348227 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_tsdadg_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o built in 0.275712 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o built in 2.401114 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o built in 0.397895 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sigma_sqd_w_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o built in 0.537272 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o built in 0.328293 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o built in 0.393837 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calendar.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/matrix_operations.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o built in 3.012844 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_pflotranmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_pflotranmod.mod.stamp GNU [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o built in 0.442375 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/diocplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/diocplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopeplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopeplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mockplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/mockplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o built in 0.336829 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diagnose_correlations_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o built in 0.449224 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/Nc_Ncn_eqns.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o built in 0.375692 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_diffusion.mod cmake/atm/CMakeFiles/atm.dir/gw_diffusion.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_utils.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o built in 0.390103 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/generate_uniform_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/transform_to_pdf_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o built in 0.356646 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/scream_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o built in 0.482257 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o.provides.build /usr/bin/cmake -E touch 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cmake/atm/rrtmg_lw_rtrn.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rtrn.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rtrnmr.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rtrnmr.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o built in 0.710620 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o built in 0.317793 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o.provides.build [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/histfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/histfilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_utils.mod cmake/atm/CMakeFiles/atm.dir/spmd_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sim_dat.mod cmake/atm/CMakeFiles/atm.dir/mo_sim_dat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/edpftvarcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mcica_subcol_gen_lw.mod cmake/atm/CMakeFiles/atm.dir/mcica_subcol_gen_lw.mod.stamp GNU [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o built in 0.323992 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/EnergyFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o Target CMakeFiles/lnd.dir/dynVarMod.F90.o built in 0.372995 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o built in 0.575865 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o built in 1.184159 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/file_functions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o built in 1.241487 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/interpolation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o built in 0.388659 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o built in 0.331569 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o built in 0.385605 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_type.mod cmake/atm/CMakeFiles/atm.dir/stats_type.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/t_in_k_module.mod cmake/atm/CMakeFiles/atm.dir/t_in_k_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lapack_wrap.mod cmake/atm/CMakeFiles/atm.dir/lapack_wrap.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_tunable.mod cmake/atm/CMakeFiles/atm.dir/parameters_tunable.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/index_mapping.mod cmake/atm/CMakeFiles/atm.dir/index_mapping.mod.stamp GNU /usr/bin/cmake -E 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-DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o built in 0.471933 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_tsdadg_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_tsdadg_pdf.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o built in 0.611367 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SolarAbsorbedType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o built in 0.498775 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o built in 0.638269 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_utilities.mod cmake/atm/CMakeFiles/atm.dir/pdf_utilities.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sigma_sqd_w_module.mod cmake/atm/CMakeFiles/atm.dir/sigma_sqd_w_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/calendar.mod cmake/atm/CMakeFiles/atm.dir/calendar.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/matrix_operations.mod cmake/atm/CMakeFiles/atm.dir/matrix_operations.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hydromet_pdf_parameter_module.mod cmake/atm/CMakeFiles/atm.dir/hydromet_pdf_parameter_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diagnose_correlations_module.mod cmake/atm/CMakeFiles/atm.dir/diagnose_correlations_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nc_ncn_eqns.mod cmake/atm/CMakeFiles/atm.dir/nc_ncn_eqns.mod.stamp GNU [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o built in 1.190141 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o built in 0.991216 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o built in 1.128531 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/est_kessler_microphys_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o built in 0.656355 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o built in 0.404430 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/generate_uniform_sample_module.mod cmake/atm/CMakeFiles/atm.dir/generate_uniform_sample_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/transform_to_pdf_module.mod cmake/atm/CMakeFiles/atm.dir/transform_to_pdf_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_spcvrt.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_spcvrt.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o built in 0.858889 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o.provides.build [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o.provides.build [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/physconst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o built in 0.413374 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o built in 0.454200 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_control_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o built in 0.620295 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/GridcellDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o built in 0.337723 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_map_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o built in 0.794741 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/time_manager.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o built in 0.833403 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpdecomptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpdecomptype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgcreactionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/bgcreactionsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantsoilbgccnptype.mod cmake/lnd/CMakeFiles/lnd.dir/plantsoilbgccnptype.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o built in 0.638842 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/ioFileMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o built in 0.783349 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsmod.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o built in 0.344725 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o.provides.build [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o built in 0.585256 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o built in 0.923109 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o built in 0.977802 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o built in 0.916474 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glcDiagnosticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o built in 0.513176 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o built in 0.332569 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o built in 0.365844 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o.provides.build [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o built in 0.382607 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o built in 0.623301 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/CNStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o built in 2.982919 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_spcvmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_spcvmc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/file_functions.mod cmake/atm/CMakeFiles/atm.dir/file_functions.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolation.mod cmake/atm/CMakeFiles/atm.dir/interpolation.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/saturation.mod cmake/atm/CMakeFiles/atm.dir/saturation.mod.stamp GNU [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o built in 0.367186 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_variables.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o built in 0.347758 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/matrix_solver_wrapper.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o built in 0.417340 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf_main.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o built in 1.896439 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_pdf.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o built in 0.897235 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/input_reader.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o built in 3.050559 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_common.mod cmake/atm/CMakeFiles/atm.dir/gw_common.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o built in 0.523276 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/est_kessler_microphys_module.mod cmake/atm/CMakeFiles/atm.dir/est_kessler_microphys_module.mod.stamp GNU [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_importance_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o built in 0.863994 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o.provides.build [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elmfates_paraminterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o built in 0.577386 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physconst.mod cmake/atm/CMakeFiles/atm.dir/physconst.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_control_mod.mod cmake/atm/CMakeFiles/atm.dir/cam_control_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_map_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_map_utils.mod.stamp GNU [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/comsrf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o built in 0.334030 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o built in 13.917947 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/physical_constants.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o built in 0.358049 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvarmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvarmod.mod.stamp GNU [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/glb_verif_smry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o built in 0.371296 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_manager.mod cmake/atm/CMakeFiles/atm.dir/time_manager.mod.stamp GNU [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o built in 0.287038 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o built in 0.304001 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iofilemod.mod cmake/atm/CMakeFiles/atm.dir/iofilemod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o built in 0.604032 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o built in 3.429036 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/energyfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/energyfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshistoryinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshistoryinterfacemod.mod.stamp GNU [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o built in 0.354458 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o built in 0.415446 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o built in 0.607345 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/orbit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o built in 1.721964 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o built in 0.307451 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosoltype.mod cmake/lnd/CMakeFiles/lnd.dir/aerosoltype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o built in 0.316628 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbt.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o built in 0.532353 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o built in 0.402511 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/diocbgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/diocbgcreactionstype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o built in 0.807466 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rad.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rad.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopebgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopebgcreactionstype.mod.stamp GNU [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o built in 1.147252 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mockbgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/mockbgcreactionstype.mod.stamp GNU [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/grid_class.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o built in 0.868656 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridweightsmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridweightsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_type_utilities.mod cmake/atm/CMakeFiles/atm.dir/stats_type_utilities.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glcdiagnosticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/glcdiagnosticsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_variables.mod cmake/atm/CMakeFiles/atm.dir/stats_variables.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunitdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/landunitdatatype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/matrix_solver_wrapper.mod cmake/atm/CMakeFiles/atm.dir/matrix_solver_wrapper.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/sedfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_hybrid_pdf_main.mod cmake/atm/CMakeFiles/atm.dir/new_hybrid_pdf_main.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o.provides.build [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_pdf_main.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o built in 0.539815 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o.provides.build [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/output_grads.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o built in 0.292129 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynLandunitAreaMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o built in 0.743905 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o built in 0.188329 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o built in 0.269251 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/reweightMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o Target CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o built in 0.348380 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o built in 2.408349 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o built in 0.222288 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o built in 0.281343 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o built in 0.316146 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o built in 0.267953 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o built in 0.190013 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o built in 0.206478 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o built in 0.269025 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o built in 0.247721 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o built in 0.281726 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o built in 0.293380 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o built in 0.245889 seconds [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o built in 3.478911 seconds [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initGridCellsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o built in 0.269541 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_reader.mod cmake/atm/CMakeFiles/atm.dir/input_reader.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o.provides.build [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/precipitation_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o built in 0.320651 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o built in 0.898699 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o.provides.build [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_convect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o built in 0.485663 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o.provides.build [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_front.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o built in 0.256961 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopystatetype.mod cmake/lnd/CMakeFiles/lnd.dir/canopystatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonfluxtype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o built in 0.423924 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenfluxtype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_oro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o built in 0.287744 seconds [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o built in 0.305095 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndtype.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndtype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o built in 2.181490 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o built in 1.026073 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesplanthydraulicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesplanthydraulicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesparameterderivedmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesparameterderivedmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o.provides.build [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/wei96.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o built in 0.317380 seconds [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tsinti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o built in 0.453756 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o built in 0.457256 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessoilbgcfluxmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessoilbgcfluxmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sfmainmod.mod cmake/lnd/CMakeFiles/lnd.dir/sfmainmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o built in 0.297681 seconds [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/dust_sediment_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o built in 0.295301 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/comsrf.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VerticalProfileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o built in 0.455548 seconds [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/quadrature_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o built in 0.492254 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_utils.mod cmake/atm/CMakeFiles/atm.dir/time_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/filenames.mod cmake/atm/CMakeFiles/atm.dir/filenames.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o built in 0.570565 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_saturation.mod cmake/atm/CMakeFiles/atm.dir/wv_saturation.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrbgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/betrbgcmod.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/gas_wetdep_opts.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_params.mod cmake/atm/CMakeFiles/atm.dir/mo_params.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o built in 1.114638 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/orbit.mod cmake/atm/CMakeFiles/atm.dir/orbit.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glc2lndMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o built in 0.329290 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hirsbt.mod cmake/atm/CMakeFiles/atm.dir/hirsbt.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_init.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_init.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_init.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_init.mod.stamp GNU 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o built in 0.258808 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_rad_zt_module.mod cmake/atm/CMakeFiles/atm.dir/stats_rad_zt_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_sfc_module.mod cmake/atm/CMakeFiles/atm.dir/stats_sfc_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_zm_module.mod cmake/atm/CMakeFiles/atm.dir/stats_zm_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_zt_module.mod cmake/atm/CMakeFiles/atm.dir/stats_zt_module.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/corr_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o built in 0.315452 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/precipitation_fraction.mod cmake/atm/CMakeFiles/atm.dir/precipitation_fraction.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/lh_microphys_var_covar_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o built in 0.369686 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o built in 0.421850 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_chemstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_chemstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_constants.mod cmake/atm/CMakeFiles/atm.dir/mo_constants.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o built in 0.394709 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_sediment_mod.mod cmake/atm/CMakeFiles/atm.dir/dust_sediment_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o.provides.build [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dimensions_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/quadrature_mod.mod cmake/atm/CMakeFiles/atm.dir/quadrature_mod.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_control.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gas_wetdep_opts.mod cmake/atm/CMakeFiles/atm.dir/gas_wetdep_opts.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o.provides.build [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airmas.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o built in 0.274112 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o.provides.build [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveall.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o built in 0.290105 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o.provides.build [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveo3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o built in 0.401448 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o.provides.build [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ps2str.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o built in 0.241894 seconds [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o built in 0.267520 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenstatetype.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setair.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o built in 0.355174 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvartimeuninterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvartimeuninterpmod.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lymana.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o built in 0.262526 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstatetype.mod.stamp GNU [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelen.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o built in 0.271506 seconds [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDBtranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o built in 0.632704 seconds [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelab.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o built in 0.247401 seconds [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o built in 0.235898 seconds [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sphers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o built in 0.399944 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edloggingmortalitymod.mod cmake/lnd/CMakeFiles/lnd.dir/edloggingmortalitymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o.provides.build [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o built in 0.441487 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o built in 0.256364 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/verticalprofilemod.mod cmake/lnd/CMakeFiles/lnd.dir/verticalprofilemod.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_helper_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o built in 0.347703 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/reactionsfactory.mod cmake/lnd/CMakeFiles/lnd.dir/reactionsfactory.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mean_adv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o built in 0.619135 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sponge_layer_damping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o built in 0.624256 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glc2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/glc2lndmod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/fill_holes.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o built in 0.277249 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pos_definite_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o built in 0.297155 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/turbulent_adv_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o built in 0.288647 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o built in 0.278807 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_pressure.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o built in 0.570787 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_exchangemod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/numerical_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o built in 0.265073 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_exchangemod.mod.stamp GNU [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o built in 0.264771 seconds [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o built in 0.245241 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/skx_module.mod cmake/atm/CMakeFiles/atm.dir/skx_module.mod.stamp GNU [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o built in 0.472866 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/corr_varnce_module.mod cmake/atm/CMakeFiles/atm.dir/corr_varnce_module.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o built in 0.580580 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hetfrz_classnuc.mod cmake/atm/CMakeFiles/atm.dir/hetfrz_classnuc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lh_microphys_var_covar_module.mod cmake/atm/CMakeFiles/atm.dir/lh_microphys_var_covar_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/dust_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o built in 0.380586 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o.provides.build 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share 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-D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setozo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o built in 0.341888 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelab.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelab.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sphers.mod cmake/atm/CMakeFiles/atm.dir/mo_sphers.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o built in 0.438595 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/physics_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cldoptics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o built in 0.327909 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_helper_module.mod cmake/atm/CMakeFiles/atm.dir/advance_helper_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diffusion.mod cmake/atm/CMakeFiles/atm.dir/diffusion.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mean_adv.mod cmake/atm/CMakeFiles/atm.dir/mean_adv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sponge_layer_damping.mod cmake/atm/CMakeFiles/atm.dir/sponge_layer_damping.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/fill_holes.mod cmake/atm/CMakeFiles/atm.dir/fill_holes.mod.stamp GNU [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mono_flux_limiter.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o built in 0.325724 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o built in 0.362961 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edbtranmod.mod cmake/lnd/CMakeFiles/lnd.dir/edbtranmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edcohortdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edcohortdynamicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o.provides.build [ 59%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnptype.mod.stamp GNU [ 59%] Building Fortran 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o built in 0.331227 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelfatesmod.mod 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cmake_copy_f90_mod cmake/atm/calc_pressure.mod cmake/atm/CMakeFiles/atm.dir/calc_pressure.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edmortalityfunctionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edmortalityfunctionsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/numerical_check.mod cmake/atm/CMakeFiles/atm.dir/numerical_check.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o built in 0.766015 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/adg1_adg2_3d_luhar_pdf.mod cmake/atm/CMakeFiles/atm.dir/adg1_adg2_3d_luhar_pdf.mod.stamp GNU [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sfc_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o built in 0.321890 seconds [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o built in 0.472665 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_clubb_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o built in 0.747483 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesbstressmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesbstressmod.mod.stamp GNU [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o built in 1.129471 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edphysiologymod.mod cmake/lnd/CMakeFiles/lnd.dir/edphysiologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpatchdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edpatchdynamicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o.provides.build [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o built in 2.337231 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o built in 0.391448 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o built in 0.897923 seconds [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInventoryInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg1_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o built in 2.655468 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgcreactionscentecacnptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgcreactionscentecacnptype.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o built in 0.442045 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o.provides.build [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_driver_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o built in 0.723268 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edcanopystructuremod.mod cmake/lnd/CMakeFiles/lnd.dir/edcanopystructuremod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinventoryinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinventoryinitmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o built in 0.395067 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o.provides.build [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/massborrow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o built in 0.222224 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o built in 1.037644 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o built in 16.195493 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o built in 0.605574 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o built in 0.854073 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o built in 0.296877 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldaero_mod.mod cmake/atm/CMakeFiles/atm.dir/cldaero_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_common.mod cmake/atm/CMakeFiles/atm.dir/dust_common.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columndatatype.mod cmake/lnd/CMakeFiles/lnd.dir/columndatatype.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/parallel_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o built in 0.304149 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edmainmod.mod cmake/lnd/CMakeFiles/lnd.dir/edmainmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_state.mod 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-DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_xsections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_rtlink.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o built in 0.593788 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropHarvestPoolsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o built in 0.248168 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/applicationsfactory.mod cmake/lnd/CMakeFiles/lnd.dir/applicationsfactory.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setcld.mod cmake/atm/CMakeFiles/atm.dir/mo_setcld.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceResistanceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o built in 0.347127 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittVertTranspMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o built in 0.326575 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setozo.mod cmake/atm/CMakeFiles/atm.dir/mo_setozo.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o built in 0.331379 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/set_cp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o built in 3.829033 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o built in 0.211112 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o built in 0.554186 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DryDepVelocity.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cldoptics.mod cmake/atm/CMakeFiles/atm.dir/pkg_cldoptics.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_explicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o built in 0.634360 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mono_flux_limiter.mod cmake/atm/CMakeFiles/atm.dir/mono_flux_limiter.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DUSTMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o built in 0.360256 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o built in 0.324356 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mixing_length.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/WoodProductsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o built in 0.445092 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ErosionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o built in 0.669855 seconds [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o built in 0.892436 seconds [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_closure_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o built in 0.366594 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sfc_varnce_module.mod cmake/atm/CMakeFiles/atm.dir/sfc_varnce_module.mod.stamp GNU [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterBudgetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o built in 0.361710 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice.mod.stamp GNU [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o built in 0.489881 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_0.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_utils.mod.stamp GNU /usr/bin/cmake 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CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o built in 1.339922 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o.provides.build [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mass_xforms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o built in 0.315060 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o built in 0.363552 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_xsections.mod cmake/atm/CMakeFiles/atm.dir/mo_xsections.mod.stamp GNU [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mean_mass.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_rtlink.mod cmake/atm/CMakeFiles/atm.dir/mo_rtlink.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/set_cp.mod cmake/atm/CMakeFiles/atm.dir/set_cp.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clip_explicit.mod cmake/atm/CMakeFiles/atm.dir/clip_explicit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dustmod.mod cmake/lnd/CMakeFiles/lnd.dir/dustmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/woodproductsmod.mod cmake/lnd/CMakeFiles/lnd.dir/woodproductsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/erosionmod.mod cmake/lnd/CMakeFiles/lnd.dir/erosionmod.mod.stamp GNU /usr/bin/cmake -E touch 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/setup_clubb_pdf_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o.provides.build [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o built in 2.815559 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/almbetrnlmod.mod cmake/lnd/CMakeFiles/lnd.dir/almbetrnlmod.mod.stamp GNU [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg2_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o built in 2.046561 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o.provides.build [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o built in 2.392063 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesrestartinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesrestartinterfacemod.mod.stamp GNU [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/coordinate_systems_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o built in 0.452983 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o.provides.build [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybrid_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o built in 0.304385 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/control_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o built in 0.387807 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/spmd_dyn.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o built in 0.309806 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/charge_neutrality.mod cmake/atm/CMakeFiles/atm.dir/charge_neutrality.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mass_xforms.mod cmake/atm/CMakeFiles/atm.dir/mo_mass_xforms.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mean_mass.mod cmake/atm/CMakeFiles/atm.dir/mo_mean_mass.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o built in 0.385962 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_pchem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_windm_edsclrm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o built in 0.307414 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_wp2_wp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o built in 1.277232 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xm_wpxp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o built in 2.255457 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp2_xpyp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o built in 5.305488 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_closure_module.mod cmake/atm/CMakeFiles/atm.dir/pdf_closure_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/setup_clubb_pdf_params.mod cmake/atm/CMakeFiles/atm.dir/setup_clubb_pdf_params.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_api_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_api_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/coordinate_systems_mod.mod cmake/atm/CMakeFiles/atm.dir/coordinate_systems_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybrid_mod.mod cmake/atm/CMakeFiles/atm.dir/hybrid_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/control_mod.mod cmake/atm/CMakeFiles/atm.dir/control_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_dyn.mod cmake/atm/CMakeFiles/atm.dir/spmd_dyn.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_pchem.mod cmake/atm/CMakeFiles/atm.dir/mo_pchem.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_windm_edsclrm_module.mod cmake/atm/CMakeFiles/atm.dir/advance_windm_edsclrm_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_wp2_wp3_module.mod cmake/atm/CMakeFiles/atm.dir/advance_wp2_wp3_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xm_wpxp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xm_wpxp_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edgetype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o built in 0.552376 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/reduction_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o built in 5.219967 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gridgraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o built in 0.742975 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybvcoord_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o built in 0.819690 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xp2_xpyp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xp2_xpyp_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edgetype_mod.mod cmake/atm/CMakeFiles/atm.dir/edgetype_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/reduction_mod.mod cmake/atm/CMakeFiles/atm.dir/reduction_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gridgraph_mod.mod cmake/atm/CMakeFiles/atm.dir/gridgraph_mod.mod.stamp GNU [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_clubb_core_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o built in 0.599033 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o.provides.build [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/pmgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o built in 0.525418 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/element_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o built in 0.487474 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metagraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o built in 0.538976 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/spacecurve_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o built in 16.492836 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationdatatype.mod.stamp GNU [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TemperatureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o built in 15.088650 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynHarvestMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o built in 0.732734 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybvcoord_mod.mod cmake/atm/CMakeFiles/atm.dir/hybvcoord_mod.mod.stamp GNU [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AnnualUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o built in 1.077420 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metis_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o built in 0.538533 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/C14DecayMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o built in 0.498962 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/vertremap_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o built in 0.501005 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonIsoFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o built in 1.572778 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o built in 0.803327 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg2_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg2_0.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pmgrid.mod cmake/atm/CMakeFiles/atm.dir/pmgrid.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_mod.mod cmake/atm/CMakeFiles/atm.dir/element_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metagraph_mod.mod cmake/atm/CMakeFiles/atm.dir/metagraph_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spacecurve_mod.mod cmake/atm/CMakeFiles/atm.dir/spacecurve_mod.mod.stamp GNU [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/derivative_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o built in 0.708133 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o built in 1.203593 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNGapMortalityBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o built in 0.838144 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o built in 1.458938 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/eos.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o built in 0.954717 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o built in 0.483680 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/rgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o built in 0.694270 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o built in 0.453555 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GrowthRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o built in 0.377259 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o built in 0.501750 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o built in 0.528932 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o built in 0.711518 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PrecisionControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o built in 0.628679 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metis_mod.mod cmake/atm/CMakeFiles/atm.dir/metis_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_base.mod cmake/atm/CMakeFiles/atm.dir/vertremap_base.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o built in 0.518140 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o.provides.build [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemBalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o.provides.build [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/getinterpnetcdfdata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o built in 8.838521 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedtype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o built in 0.783999 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GapMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o built in 0.520984 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cube_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o built in 0.429420 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/derivative_mod_base.mod cmake/atm/CMakeFiles/atm.dir/derivative_mod_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eos.mod cmake/atm/CMakeFiles/atm.dir/eos.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rgrid.mod cmake/atm/CMakeFiles/atm.dir/rgrid.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/planar_mod.mod cmake/atm/CMakeFiles/atm.dir/planar_mod.mod.stamp GNU [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/vertremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o built in 1.024486 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o built in 1.033141 seconds Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o built in 0.708606 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_clubb_core_module.mod cmake/atm/CMakeFiles/atm.dir/advance_clubb_core_module.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o built in 1.106478 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o built in 1.580354 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o.provides.build [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/getinterpnetcdfdata.mod cmake/atm/CMakeFiles/atm.dir/getinterpnetcdfdata.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/schedtype_mod.mod cmake/atm/CMakeFiles/atm.dir/schedtype_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cube_mod.mod cmake/atm/CMakeFiles/atm.dir/cube_mod.mod.stamp GNU [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/derivative_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o built in 0.805878 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o built in 0.881180 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o built in 1.068584 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o built in 0.892470 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/temperaturetype.mod cmake/lnd/CMakeFiles/lnd.dir/temperaturetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynharvestmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynharvestmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/annualupdatemod.mod.stamp GNU [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilMoistStressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o built in 1.085982 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/zoltan_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o built in 0.928067 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/scalable_grid_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o built in 2.525841 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o built in 0.624093 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowSnicarMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o built in 1.206400 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/geometry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o built in 1.389977 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/growthrespmod.mod cmake/lnd/CMakeFiles/lnd.dir/growthrespmod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedule_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o built in 0.807561 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_mod.mod cmake/atm/CMakeFiles/atm.dir/vertremap_mod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o built in 2.016880 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MaintenanceRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o built in 0.956276 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o.provides.build [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/scamMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o built in 4.447055 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o built in 1.034859 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2glcMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o built in 1.345032 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edge_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o built in 0.949208 seconds [ 68%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/precisioncontrolmod.mod cmake/lnd/CMakeFiles/lnd.dir/precisioncontrolmod.mod.stamp GNU /usr/bin/cmake -E touch 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cmake/lnd/CMakeFiles/lnd.dir/ecosystembalancecheckmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gapmortalitymod.mod cmake/lnd/CMakeFiles/lnd.dir/gapmortalitymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate1mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgridadjustmentsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgridadjustmentsmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o built in 0.449281 seconds [ 68%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/ActiveLayerMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/schedule_mod.mod cmake/atm/CMakeFiles/atm.dir/schedule_mod.mod.stamp GNU [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TotalWaterAndHeatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_api_module.mod cmake/atm/CMakeFiles/atm.dir/clubb_api_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o.provides.build [ 69%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_derived_type_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o built in 0.393883 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynInitColumnsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o built in 0.570462 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scammod.mod cmake/atm/CMakeFiles/atm.dir/scammod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod_base.mod cmake/atm/CMakeFiles/atm.dir/edge_mod_base.mod.stamp GNU [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o built in 1.318686 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/horizontal_interpolate.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o built in 1.002660 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o built in 0.631906 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/readinitial.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o built in 0.646127 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_exchangemod.mod.stamp GNU [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o built in 0.657719 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o built in 1.104029 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o built in 0.615023 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/imex_mod.mod cmake/atm/CMakeFiles/atm.dir/imex_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/planar_mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/planar_mesh_mod.mod.stamp GNU [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedYieldMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o built in 0.705258 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/se_single_column_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o built in 0.770470 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o built in 1.161214 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o.provides.build [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o built in 1.919026 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o built in 0.790184 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_derived_type_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_derived_type_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o.provides.build [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_pio_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o built in 1.027554 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/edge_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o built in 1.428676 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/mesh_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elmfates_interfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o built in 1.421735 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ch4mod.mod cmake/lnd/CMakeFiles/lnd.dir/ch4mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilmoiststressmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilmoiststressmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopyhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/canopyhydrologymod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrifDenitrifMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o built in 1.275379 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowsnicarmod.mod cmake/lnd/CMakeFiles/lnd.dir/snowsnicarmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/maintenancerespmod.mod cmake/lnd/CMakeFiles/lnd.dir/maintenancerespmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrsimulation.mod cmake/lnd/CMakeFiles/lnd.dir/betrsimulation.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2glcmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2glcmod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o built in 0.691239 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/horizontal_interpolate.mod cmake/atm/CMakeFiles/atm.dir/horizontal_interpolate.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/readinitial.mod cmake/atm/CMakeFiles/atm.dir/readinitial.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/se_single_column_mod.mod cmake/atm/CMakeFiles/atm.dir/se_single_column_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o.provides.build /usr/bin/cmake -E touch 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/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/interpolate_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o built in 1.161434 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_solar_parms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o built in 1.501698 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o built in 1.927319 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/solar_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vocemissionmod.mod cmake/lnd/CMakeFiles/lnd.dir/vocemissionmod.mod.stamp GNU /usr/bin/cmake -E touch 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o built in 1.000109 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_prop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o built in 1.147716 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/euvac.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o built in 1.605397 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BareGroundFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o built in 0.524614 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_seto2.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o built in 1.137580 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tuv_inti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o built in 1.202680 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spedata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o built in 0.482413 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_initfiles.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o built in 0.927444 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/snowhydrologymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakefluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/lakefluxesmod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o built in 0.582932 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_comp_esmf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o built in 0.675241 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_grid_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o built in 0.493687 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/bndry_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o built in 0.298096 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolate_mod.mod cmake/atm/CMakeFiles/atm.dir/interpolate_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solar_parms.mod cmake/atm/CMakeFiles/atm.dir/mo_solar_parms.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solar_data.mod cmake/atm/CMakeFiles/atm.dir/solar_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_data_utils.mod cmake/atm/CMakeFiles/atm.dir/input_data_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_prop.mod cmake/atm/CMakeFiles/atm.dir/phys_prop.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mag_parms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o built in 0.328115 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/euvac.mod cmake/atm/CMakeFiles/atm.dir/euvac.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jshort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o built in 0.823071 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jlong.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o built in 1.249995 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o built in 1.867626 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_seto2.mod cmake/atm/CMakeFiles/atm.dir/mo_seto2.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o built in 1.060738 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tuv_inti.mod cmake/atm/CMakeFiles/atm.dir/mo_tuv_inti.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spedata.mod cmake/atm/CMakeFiles/atm.dir/spedata.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_initfiles.mod cmake/atm/CMakeFiles/atm.dir/cam_initfiles.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_comp_esmf.mod cmake/atm/CMakeFiles/atm.dir/atm_comp_esmf.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rad_solar_var.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o built in 1.094331 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_grid_support.mod cmake/atm/CMakeFiles/atm.dir/cam_grid_support.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod_base.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mag_parms.mod cmake/atm/CMakeFiles/atm.dir/mag_parms.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jshort.mod cmake/atm/CMakeFiles/atm.dir/mo_jshort.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jlong.mod cmake/atm/CMakeFiles/atm.dir/mo_jlong.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/efield.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o built in 0.473082 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rad_solar_var.mod cmake/atm/CMakeFiles/atm.dir/rad_solar_var.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o built in 0.415602 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedyieldmod.mod cmake/lnd/CMakeFiles/lnd.dir/sedyieldmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilfluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/bndry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o built in 1.933848 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanfluxesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanradiationmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o built in 0.785065 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o built in 0.516045 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o built in 0.846627 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o built in 0.959148 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o built in 0.699431 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrifdenitrifmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrifdenitrifmod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeCNMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o built in 1.499649 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setz.mod cmake/atm/CMakeFiles/atm.dir/mo_setz.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/efield.mod cmake/atm/CMakeFiles/atm.dir/efield.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_support.mod cmake/atm/CMakeFiles/atm.dir/cam_history_support.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/hycoef.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o built in 0.523887 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ncdio_atm.mod cmake/atm/CMakeFiles/atm.dir/ncdio_atm.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mass_matrix_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o built in 1.258861 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_theta.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o built in 0.344263 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o built in 1.179511 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o built in 0.495163 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dof_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o built in 0.773504 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/global_norms_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o built in 0.501500 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/viscosity_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o built in 0.770882 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hycoef.mod cmake/atm/CMakeFiles/atm.dir/hycoef.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mass_matrix_mod.mod cmake/atm/CMakeFiles/atm.dir/mass_matrix_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_theta.mod cmake/atm/CMakeFiles/atm.dir/viscosity_theta.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/pdelb0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o built in 0.730305 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/plevs0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o built in 0.322119 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfaceradiationmod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/RootDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o built in 0.331196 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dof_mod.mod cmake/atm/CMakeFiles/atm.dir/dof_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/global_norms_mod.mod cmake/atm/CMakeFiles/atm.dir/global_norms_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_base.mod cmake/atm/CMakeFiles/atm.dir/viscosity_base.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o built in 2.236973 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cg_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyFluxLimitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o built in 3.578491 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VegStructUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o built in 0.633487 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeochemmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeochemmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o built in 0.481825 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_si_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o built in 0.490665 seconds [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dyncropFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o built in 0.386346 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o built in 0.555629 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2atmmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2atmmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/baregroundfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/baregroundfluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakehydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/lakehydrologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/laketemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/laketemperaturemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o built in 1.164923 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o built in 0.642453 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cg_mod.mod cmake/atm/CMakeFiles/atm.dir/cg_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_si_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_si_mod.mod.stamp GNU /usr/bin/cmake -E touch 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o built in 0.293098 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegstructupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/vegstructupdatemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeophysmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyncropfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dyncropfilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o.provides.build [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNPhenologyBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o built in 0.590422 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_mod.mod cmake/atm/CMakeFiles/atm.dir/viscosity_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solver_mod.mod cmake/atm/CMakeFiles/atm.dir/solver_mod.mod.stamp GNU [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/unit_tests_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o built in 1.285777 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o.provides.build [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_advection_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o built in 0.915205 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o built in 2.710519 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/model_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_state_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o built in 2.646713 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnphenologybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnphenologybetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/unit_tests_mod.mod cmake/atm/CMakeFiles/atm.dir/unit_tests_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_base.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_base.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o built in 0.443810 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sl_advection.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o built in 1.376444 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_init_mod.mod cmake/atm/CMakeFiles/atm.dir/model_init_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_state_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_state_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advance_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o built in 1.152540 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sl_advection.mod cmake/atm/CMakeFiles/atm.dir/sl_advection.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advection_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o built in 0.345989 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o built in 6.486898 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/allocationmod.mod cmake/lnd/CMakeFiles/lnd.dir/allocationmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNAllocationBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o built in 2.271584 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advance_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advance_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_driver_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o built in 4.006107 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_implicit_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o built in 0.299429 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittDecompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o built in 1.196587 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_base.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_base.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_implicit_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_implicit_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o built in 2.275290 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnallocationbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnallocationbetrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/prim_driver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o built in 0.859494 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_util_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o built in 0.319077 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_grid.mod cmake/atm/CMakeFiles/atm.dir/dyn_grid.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o built in 1.858123 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittdecompmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittdecompmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o.provides.build [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_funcsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o built in 3.494365 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesismod.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesismod.mod.stamp GNU [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o built in 1.235202 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_data_flux.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o built in 0.497101 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ref_pres.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o built in 0.366776 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/namelist_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o built in 2.699289 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_util_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_util_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_grid.mod cmake/atm/CMakeFiles/atm.dir/phys_grid.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/co2_data_flux.mod cmake/atm/CMakeFiles/atm.dir/co2_data_flux.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o built in 0.661066 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/polar_avg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/readParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o built in 0.436042 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ref_pres.mod cmake/atm/CMakeFiles/atm.dir/ref_pres.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o built in 2.545155 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sethet.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o built in 0.730577 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopyfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/canopyfluxesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/readparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/readparamsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o.provides.build [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/controlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o built in 3.321579 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_funcsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_funcsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_msis_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o built in 0.421254 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_snoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o built in 1.007508 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopytemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/canopytemperaturemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/namelist_mod.mod cmake/atm/CMakeFiles/atm.dir/namelist_mod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o built in 1.190511 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hk_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o built in 0.465539 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/debug_info.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o built in 0.332134 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o built in 1.147191 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/controlmod.mod cmake/lnd/CMakeFiles/lnd.dir/controlmod.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ndepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o built in 0.340375 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers_suite.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o built in 0.784719 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radae.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o built in 0.582900 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_instMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o built in 0.397993 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o built in 0.774238 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynpftFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_test_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o built in 0.406892 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o built in 0.456672 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pdepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/dadadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o built in 0.349148 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg4.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o built in 0.568135 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/restFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o built in 0.341498 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qqflx_fixer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o built in 1.884079 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/intp_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o built in 1.799408 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o built in 0.346737 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_import_export.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_buffers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o built in 0.330043 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o built in 0.504174 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/interp_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o built in 0.784686 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ndepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/ndepstreammod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_instmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_instmod.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SatellitePhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o built in 1.964731 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpftfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpftfilemod.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o built in 1.020967 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/sat_hist.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o built in 0.922380 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/soil_erod_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o built in 0.370024 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/polar_avg.mod cmake/atm/CMakeFiles/atm.dir/polar_avg.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o built in 1.929489 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pdepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/pdepstreammod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_synoz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o /usr/bin/cmake -E cmake_copy_f90_mod 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/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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cmake/atm/hk_conv.mod cmake/atm/CMakeFiles/atm.dir/hk_conv.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/debug_info.mod cmake/atm/CMakeFiles/atm.dir/debug_info.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldwat.mod cmake/atm/CMakeFiles/atm.dir/cldwat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers_suite.mod cmake/atm/CMakeFiles/atm.dir/tracers_suite.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o built in 0.424965 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radae.mod cmake/atm/CMakeFiles/atm.dir/radae.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/module_perturb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/FireMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o built in 0.243110 seconds Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o built in 0.551558 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/satellitephenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/satellitephenologymod.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridDriverMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o built in 0.323930 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_test_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_test_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_buffers.mod cmake/atm/CMakeFiles/atm.dir/cam_history_buffers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_types.mod cmake/atm/CMakeFiles/atm.dir/physics_types.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interp_mod.mod cmake/atm/CMakeFiles/atm.dir/interp_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sat_hist.mod cmake/atm/CMakeFiles/atm.dir/sat_hist.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero 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CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o built in 0.901119 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelvsfmmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelvsfmmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgriddrivermod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgriddrivermod.mod.stamp GNU [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o built in 1.454073 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterMovementMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o Target CMakeFiles/atm.dir/subcol_utils.F90.o built in 2.338763 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/soil_erod_mod.mod cmake/atm/CMakeFiles/atm.dir/soil_erod_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_synoz.mod cmake/atm/CMakeFiles/atm.dir/mo_synoz.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/boundarydata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o built in 1.495153 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusdynamicsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwatermovementmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwatermovementmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o built in 3.620116 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/init_hydrology.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o built in 0.990318 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_comp.mod cmake/atm/CMakeFiles/atm.dir/dyn_comp.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/majorsp_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o built in 0.313658 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_scream.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o built in 0.323856 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rayleigh_friction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o built in 0.321959 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cld_sediment.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o built in 0.363139 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/gravity_waves_sources.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o built in 0.532135 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/module_perturb.mod cmake/atm/CMakeFiles/atm.dir/module_perturb.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o.provides.build [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_gmean.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o built in 1.902142 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/firemod.mod cmake/lnd/CMakeFiles/lnd.dir/firemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/soilhydrologymod.mod.stamp GNU [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNEcosystemDynBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o built in 0.539634 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_utils.mod cmake/atm/CMakeFiles/atm.dir/subcol_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o.provides.build [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/dust_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o built in 4.357506 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_fstrat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o built in 0.500763 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/boundarydata.mod cmake/atm/CMakeFiles/atm.dir/boundarydata.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/majorsp_diffusion.mod cmake/atm/CMakeFiles/atm.dir/majorsp_diffusion.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_sat_scream.mod cmake/atm/CMakeFiles/atm.dir/wv_sat_scream.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rayleigh_friction.mod cmake/atm/CMakeFiles/atm.dir/rayleigh_friction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cld_sediment.mod cmake/atm/CMakeFiles/atm.dir/pkg_cld_sediment.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gravity_waves_sources.mod cmake/atm/CMakeFiles/atm.dir/gravity_waves_sources.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o built in 0.353391 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o.provides.build [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemDynMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_gmean.mod cmake/atm/CMakeFiles/atm.dir/phys_gmean.mod.stamp GNU [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm/physics_buffer.F90 -o CMakeFiles/atm.dir/physics_buffer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o built in 0.820389 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_model.mod cmake/atm/CMakeFiles/atm.dir/dust_model.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_fstrat.mod cmake/atm/CMakeFiles/atm.dir/mo_fstrat.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o built in 2.179149 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o.provides.build [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_flbc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o built in 0.785219 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_flbc.mod cmake/atm/CMakeFiles/atm.dir/mo_flbc.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/chem_surfvals.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o built in 2.937433 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soiltemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/soiltemperaturemod.mod.stamp GNU [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o built in 0.481948 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chem_surfvals.mod cmake/atm/CMakeFiles/atm.dir/chem_surfvals.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o Target CMakeFiles/atm.dir/physics_buffer.F90.o built in 4.004309 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_buffer.mod cmake/atm/CMakeFiles/atm.dir/physics_buffer.mod.stamp GNU [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o built in 1.239318 seconds [ 81%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyNoDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o built in 0.433029 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o built in 4.546865 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/short_lived_species.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o built in 0.831329 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/read_volc_radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o built in 0.423964 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radheat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o built in 1.717774 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnecosystemdynbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnecosystemdynbetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ecosystemdynmod.mod cmake/lnd/CMakeFiles/lnd.dir/ecosystemdynmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologydrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologydrainagemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologynodrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologynodrainagemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o built in 0.415435 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o.provides.build [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o [ 82%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_initializeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o built in 0.705734 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ghg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o built in 0.418708 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iondrag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o built in 0.376756 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ionosphere.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o built in 1.137044 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_tstcp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o built in 0.350811 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3.mod cmake/atm/CMakeFiles/atm.dir/micro_p3.mod.stamp GNU [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qbo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o built in 0.321574 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o built in 0.571014 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_data.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wetdep.mod cmake/atm/CMakeFiles/atm.dir/wetdep.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/short_lived_species.mod cmake/atm/CMakeFiles/atm.dir/short_lived_species.mod.stamp GNU [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_rename.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/read_volc_radiation_data.mod cmake/atm/CMakeFiles/atm.dir/read_volc_radiation_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radheat.mod cmake/atm/CMakeFiles/atm.dir/radheat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_aero_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_aero_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ghg_data.mod cmake/atm/CMakeFiles/atm.dir/ghg_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iondrag.mod cmake/atm/CMakeFiles/atm.dir/iondrag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ionosphere.mod cmake/atm/CMakeFiles/atm.dir/ionosphere.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_tstcp.mod cmake/atm/CMakeFiles/atm.dir/subcol_tstcp.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/qbo.mod cmake/atm/CMakeFiles/atm.dir/qbo.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o built in 5.117953 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history.mod cmake/atm/CMakeFiles/atm.dir/cam_history.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o.provides.build [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/clybry_fam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airglow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o built in 0.510690 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airplane.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o built in 0.368181 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_cph.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o built in 2.591513 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_initializemod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_initializemod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o built in 0.491943 seconds [ 84%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_exp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o built in 0.557970 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o.provides.build [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aero_settling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o built in 0.358177 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jeuv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o built in 0.386417 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ghg_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o built in 1.000947 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o built in 0.759431 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_neu_wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o built in 0.434725 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o built in 0.682819 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/rate_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o built in 1.882014 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/balancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/balancecheckmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o.provides.build [ 86%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_driver.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o built in 0.365172 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tropopause.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o built in 0.940775 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o.provides.build [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ebert_curry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o built in 0.347859 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o built in 1.476192 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/slingo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aoa_tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o built in 0.699398 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_ozone_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o built in 0.470996 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituent_burden.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o built in 0.493410 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o built in 0.438769 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tidal_diag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o built in 0.389450 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_cover_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o built in 0.564889 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/conv_water.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o built in 0.627817 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_update_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o built in 0.368686 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/uwshcu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o built in 0.419653 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o built in 0.520747 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nudging.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/sslt_rebin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o built in 0.427437 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o built in 3.357632 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_driver.mod cmake/lnd/CMakeFiles/lnd.dir/elm_driver.mod.stamp GNU [ 89%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_esmf.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o built in 0.463967 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/eddy_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o built in 0.250743 seconds [ 89%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_mct.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o built in 1.850924 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_defaults.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o built in 0.375600 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o.provides.build [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_scam.F90 -o 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_cycle.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o built in 2.815445 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rad_constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o built in 0.553905 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_rename.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_rename.mod.stamp GNU [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/output_aerocom_aie.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o built in 0.483692 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o.provides.build [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/cfc11star.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o built in 0.616722 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_apex.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o built in 0.473869 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clybry_fam.mod cmake/atm/CMakeFiles/atm.dir/clybry_fam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airglow.mod cmake/atm/CMakeFiles/atm.dir/mo_airglow.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airplane.mod cmake/atm/CMakeFiles/atm.dir/mo_airplane.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_cph.mod cmake/atm/CMakeFiles/atm.dir/mo_cph.mod.stamp GNU 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eddy_diff.mod cmake/atm/CMakeFiles/atm.dir/eddy_diff.mod.stamp GNU 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90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o built in 0.475549 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_calcsize.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o built in 0.795680 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_aerocom_aie.mod cmake/atm/CMakeFiles/atm.dir/output_aerocom_aie.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_wateruptake.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o built in 1.566067 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cfc11star.mod cmake/atm/CMakeFiles/atm.dir/cfc11star.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_apex.mod cmake/atm/CMakeFiles/atm.dir/mo_apex.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chm_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o built in 0.605297 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_solarproton.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o built in 0.952777 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_rates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o built in 0.230612 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/exbdrift.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o built in 0.327810 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o.provides.build [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/oldcloud.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o built in 0.353704 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldfrc2m.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o built in 0.351743 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zm_conv.mod cmake/atm/CMakeFiles/atm.dir/zm_conv.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hetfrz_classnuc_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o built in 0.859707 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop_bam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o built in 0.310704 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o built in 0.367577 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o.provides.build [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/mo_setsox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o built in 0.424621 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/camsrfexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o built in 0.724261 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/tracer_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o built in 0.608416 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_gasaerexch.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_gasaerexch.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_newnuc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_newnuc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_calcsize.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_calcsize.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o built in 0.869924 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_wateruptake.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_wateruptake.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o.provides.build [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aurora.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o built in 1.402554 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chm_diags.mod cmake/atm/CMakeFiles/atm.dir/mo_chm_diags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solarproton.mod cmake/atm/CMakeFiles/atm.dir/mo_solarproton.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_rates.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_rates.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/exbdrift.mod cmake/atm/CMakeFiles/atm.dir/exbdrift.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o built in 1.011182 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/oldcloud.mod cmake/atm/CMakeFiles/atm.dir/oldcloud.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/modal_aer_opt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldfrc2m.mod cmake/atm/CMakeFiles/atm.dir/cldfrc2m.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o built in 0.744175 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hetfrz_classnuc_cam.mod cmake/atm/CMakeFiles/atm.dir/hetfrz_classnuc_cam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop_bam.mod cmake/atm/CMakeFiles/atm.dir/ndrop_bam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice_cam.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o.provides.build /usr/bin/cmake -E touch 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_coag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o built in 11.183589 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop.mod cmake/atm/CMakeFiles/atm.dir/ndrop.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o built in 0.824277 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/seasalt_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/linoz_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o built in 0.635756 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_cnst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o built in 0.563199 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_aurora.mod cmake/atm/CMakeFiles/atm.dir/mo_aurora.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_extfrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o built in 0.989906 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lightning.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o built in 0.719405 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_srcs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o built in 0.646077 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o built in 0.606224 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sulf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o built in 0.629684 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o built in 2.497972 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_srf_emissions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tgcm_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o built in 0.606636 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aircraft_emit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o built in 0.449342 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o built in 0.477613 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ghg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o built in 0.624444 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ozone.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o built in 0.829839 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_volcaero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o built in 0.651299 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aer_opt.mod cmake/atm/CMakeFiles/atm.dir/modal_aer_opt.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/cloud_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o built in 1.189956 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o built in 0.651565 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cospsimulator_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o built in 0.397084 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rrtmg_state.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o built in 0.691521 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/check_energy.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o built in 0.634780 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o built in 0.774438 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat2m_macro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o built in 0.540686 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/uwshcu.mod cmake/atm/CMakeFiles/atm.dir/uwshcu.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zm_conv_intr.mod cmake/atm/CMakeFiles/atm.dir/zm_conv_intr.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_drag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o built in 0.408973 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o built in 1.115136 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_import_export.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o built in 0.833197 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_deposition.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o built in 0.262218 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_drydep.mod cmake/atm/CMakeFiles/atm.dir/mo_drydep.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_coag.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_coag.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_convproc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o built in 1.627438 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/seasalt_model.mod cmake/atm/CMakeFiles/atm.dir/seasalt_model.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o built in 0.410598 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/linoz_data.mod cmake/atm/CMakeFiles/atm.dir/linoz_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_cnst.mod cmake/atm/CMakeFiles/atm.dir/tracer_cnst.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_extfrc.mod cmake/atm/CMakeFiles/atm.dir/mo_extfrc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lightning.mod cmake/atm/CMakeFiles/atm.dir/mo_lightning.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_srcs.mod cmake/atm/CMakeFiles/atm.dir/tracer_srcs.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setaer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_sad.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_sad.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sulf.mod cmake/atm/CMakeFiles/atm.dir/mo_sulf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_srf_emissions.mod cmake/atm/CMakeFiles/atm.dir/mo_srf_emissions.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tgcm_ubc.mod cmake/atm/CMakeFiles/atm.dir/mo_tgcm_ubc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aircraft_emit.mod cmake/atm/CMakeFiles/atm.dir/aircraft_emit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_aero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_aero.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ghg.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ghg.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ozone.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ozone.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_volcaero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_volcaero.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aer_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o built in 0.729919 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_rad_props.mod cmake/atm/CMakeFiles/atm.dir/cloud_rad_props.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cospsimulator_intr.mod cmake/atm/CMakeFiles/atm.dir/cospsimulator_intr.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radiation_data.mod cmake/atm/CMakeFiles/atm.dir/radiation_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_state.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_state.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/check_energy.mod cmake/atm/CMakeFiles/atm.dir/check_energy.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_debug.mod cmake/atm/CMakeFiles/atm.dir/phys_debug.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_shallow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o built in 1.086617 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_deep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o built in 2.397892 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o built in 4.142813 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_drag.mod cmake/atm/CMakeFiles/atm.dir/gw_drag.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/flux_avg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_aero.mod cmake/atm/CMakeFiles/atm.dir/microp_aero.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dp_coupling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o built in 0.582715 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_import_export.mod cmake/atm/CMakeFiles/atm.dir/atm_import_export.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o built in 1.200299 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_deposition.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_deposition.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tphysidl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o built in 0.465969 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_convproc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_convproc.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chlorine_loading_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o built in 0.410645 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setinv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o built in 0.882687 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setaer.mod cmake/atm/CMakeFiles/atm.dir/mo_setaer.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o built in 0.391935 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setext.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/upper_bc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o built in 0.441384 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aer_rad_props.mod cmake/atm/CMakeFiles/atm.dir/aer_rad_props.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radlw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o built in 0.362710 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radsw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o built in 0.489448 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hb_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o built in 0.714115 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldwat2m_macro.mod cmake/atm/CMakeFiles/atm.dir/cldwat2m_macro.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_shallow.mod cmake/atm/CMakeFiles/atm.dir/convect_shallow.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o built in 0.470864 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_deep.mod cmake/atm/CMakeFiles/atm.dir/convect_deep.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/flux_avg.mod cmake/atm/CMakeFiles/atm.dir/flux_avg.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dp_coupling.mod cmake/atm/CMakeFiles/atm.dir/dp_coupling.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/stratiform.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o built in 1.980194 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_amicphys.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_amicphys.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aerodep_flx.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chlorine_loading_data.mod cmake/atm/CMakeFiles/atm.dir/chlorine_loading_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setinv.mod cmake/atm/CMakeFiles/atm.dir/mo_setinv.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photoin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o built in 0.401813 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setext.mod cmake/atm/CMakeFiles/atm.dir/mo_setext.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/upper_bc.mod cmake/atm/CMakeFiles/atm.dir/upper_bc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radlw.mod cmake/atm/CMakeFiles/atm.dir/radlw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hb_diff.mod cmake/atm/CMakeFiles/atm.dir/hb_diff.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/macrop_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o built in 0.607205 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/molec_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o built in 1.608541 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/stepon.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o built in 1.186824 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aerodep_flx.mod cmake/atm/CMakeFiles/atm.dir/aerodep_flx.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/lin_strat_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o built in 0.634261 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o built in 0.518455 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photoin.mod cmake/atm/CMakeFiles/atm.dir/mo_photoin.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radsw.mod cmake/atm/CMakeFiles/atm.dir/radsw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stratiform.mod cmake/atm/CMakeFiles/atm.dir/stratiform.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/molec_diff.mod cmake/atm/CMakeFiles/atm.dir/molec_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stepon.mod cmake/atm/CMakeFiles/atm.dir/stepon.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o built in 0.293074 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o built in 1.069670 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o built in 0.511692 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/macrop_driver.mod cmake/atm/CMakeFiles/atm.dir/macrop_driver.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radiation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vertical_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o built in 0.823183 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_initialize_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_initialize_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lin_strat_chem.mod cmake/atm/CMakeFiles/atm.dir/lin_strat_chem.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/llnl_o1d_to_2oh_adj.mod cmake/atm/CMakeFiles/atm.dir/llnl_o1d_to_2oh_adj.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o built in 1.332113 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/aero_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o built in 1.515017 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photo.mod cmake/atm/CMakeFiles/atm.dir/mo_photo.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radiation.mod cmake/atm/CMakeFiles/atm.dir/radiation.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o.provides.build /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:87:67: type(clubb_config_flags_type), public, save :: clubb_config_flags 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:88:60: real(r8), dimension(nparams), public, save :: clubb_params ! Adjustable CLUBB parameters (C1, C2 ...) 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:49:60: stats_rad_zm(:), & ! stats_rad_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:48:60: stats_rad_zt(:), & ! stats_rad_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:50:57: stats_sfc(:) ! stats_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:47:56: stats_zm(:), & ! stats_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:46:56: type (stats), allocatable, target, save :: stats_zt(:), & ! stats_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o built in 1.619125 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertical_diffusion.mod cmake/atm/CMakeFiles/atm.dir/vertical_diffusion.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o built in 0.670815 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cloud_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o built in 2.676250 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aero_model.mod cmake/atm/CMakeFiles/atm.dir/aero_model.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_usrrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o built in 1.295899 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_usrrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_usrrxt.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o built in 1.269966 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_gas_phase_chemdr.mod cmake/atm/CMakeFiles/atm.dir/mo_gas_phase_chemdr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waccm_hrates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o built in 0.561872 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waccm_hrates.mod cmake/atm/CMakeFiles/atm.dir/mo_waccm_hrates.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chemini.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o built in 0.431538 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chemini.mod cmake/atm/CMakeFiles/atm.dir/mo_chemini.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chemistry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o built in 7.191965 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_intr.mod cmake/atm/CMakeFiles/atm.dir/clubb_intr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:63:45: stats_lh_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:62:44: type (stats), target, save :: stats_lh_zt, & 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1680:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1693:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o built in 1.235904 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chemistry.mod cmake/atm/CMakeFiles/atm.dir/chemistry.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o built in 2.144312 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_silhs.mod cmake/atm/CMakeFiles/atm.dir/subcol_silhs.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o built in 0.660927 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol.mod cmake/atm/CMakeFiles/atm.dir/subcol.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/restart_physics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_interface.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o built in 1.997791 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cam_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o built in 1.129305 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_physics.mod cmake/atm/CMakeFiles/atm.dir/restart_physics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o built in 4.402476 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_interface.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_interface.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o built in 8.987663 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_cam.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o built in 0.270725 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_driver.mod cmake/atm/CMakeFiles/atm.dir/microp_driver.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physpkg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/inidat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o built in 0.665792 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/inidat.mod cmake/atm/CMakeFiles/atm.dir/inidat.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/inital.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/restart_dynamics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o built in 0.302202 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/inital.mod cmake/atm/CMakeFiles/atm.dir/inital.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o built in 0.637771 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_dynamics.mod cmake/atm/CMakeFiles/atm.dir/restart_dynamics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o.provides.build [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_restart.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o built in 0.400805 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_restart.mod cmake/atm/CMakeFiles/atm.dir/cam_restart.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o.provides.build [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/runtime_opts.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS 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CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o CMakeFiles/atm.dir/physics_buffer.F90.o CMakeFiles/atm.dir/subcol_utils.F90.o CMakeFiles/atm.dir/buffer.F90.o Target libatm.a built in 0.194301 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libatm.a Target libatm.a built in 0.196280 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 98%] Built target atm make -f cmake/cpl/CMakeFiles/e3sm.exe.dir/build.make cmake/cpl/CMakeFiles/e3sm.exe.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl/CMakeFiles/e3sm.exe.dir/DependInfo.cmake --color= Scanning dependencies of target e3sm.exe make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' make -f cmake/cpl/CMakeFiles/e3sm.exe.dir/build.make cmake/cpl/CMakeFiles/e3sm.exe.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav 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Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o built in 0.165073 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/t_drv_timers_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/t_drv_timers_mod.mod.stamp GNU Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o built in 0.199357 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_type_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o.provides.build [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o built in 0.238140 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_type_mod.mod.stamp GNU [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o built in 0.637642 seconds [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o built in 0.485267 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/mrg_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/mrg_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o.provides.build [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o built in 0.285995 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o built in 1.087644 seconds Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o built in 1.237948 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o built in 0.341135 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o built in 0.233559 seconds [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o built in 0.537343 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_flux_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_flux_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_io_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_io_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o built in 1.900263 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_glc2lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_glc2lnd_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2glc_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ice_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ice_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2rof_irrig_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2rof_irrig_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_diag_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_diag_mct.mod.stamp GNU Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o built in 0.354916 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o built in 0.803256 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_wav_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_wav_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_atm_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_atm_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o built in 0.376866 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_lnd_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o built in 0.289112 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/cplcomp_exchange_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/cplcomp_exchange_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o built in 0.496318 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_glc_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o built in 0.182211 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_iac_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_iac_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o built in 0.478167 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_rof_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_rof_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o built in 0.828376 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ocn_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ocn_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o built in 0.200803 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_aoflux_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_aoflux_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include 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/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn 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/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o built in 0.384913 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_frac_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_frac_mct.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o built in 0.504527 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_domain_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_domain_mct.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm 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-I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90:39:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o built in 0.462996 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_rest_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_rest_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o built in 0.394752 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o built in 1.034842 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_hist_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_hist_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o built in 1.648061 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/cime_comp_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/cime_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o built in 0.238344 seconds [100%] Linking Fortran executable /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/cmake/cpl && /usr/bin/cmake -E cmake_link_script CMakeFiles/e3sm.exe.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -Wl,-rpath,/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -Wl,-rpath,/usr/local/NETCDF-C-4.8.0-gfortran/lib CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe -L/usr/lib/gcc/x86_64-linux-gnu/10 ../atm/libatm.a ../lnd/liblnd.a ../ice/libice.a ../ocn/libocn.a ../rof/librof.a ../glc/libglc.a ../wav/libwav.a ../iac/libiac.a ../esp/libesp.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/lib/libcsm_share.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libmct.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libmpeu.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libpiof.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libpioc.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libgptl.a -L/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -lnetcdff -lnetcdf -L/usr/local/NETCDF-C-4.8.0-gfortran/lib -lnetcdf -L/usr/local/lapack-3.8.0 -llapack -lblas /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so -lmpicxx -lrt -lpthread -ldl -lstdc++ Target /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe built in 1.277867 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' [100%] Built target e3sm.exe make[1]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld' /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_BOMEX/build/cmake-bld/CMakeFiles 0 real 270.70 user 766.25 sys 202.76 [Pipeline] sh + gzip -d 'projects/scratch/SCM_runs/test_BOMEX/run/atm.log.*.gz' gzip: projects/scratch/SCM_runs/test_BOMEX/run/atm.log.*.gz: No such file or directory [Pipeline] echo Not all logs were made for BOMEX. [Pipeline] sh + gzip -d projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.230629-182047.gz + cat projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.230629-182047 Configuring with cmake cmd: /usr/bin/time -p cmake -DCIME_MODEL=e3sm -Dcompile_threaded=FALSE -DINSTALL_SHAREDPATH=/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct -DUSE_KOKKOS=TRUE -DCOMP_NAMES='cpl;eam;elm;cice;docn;srof;sglc;swav;siac;sesp' -DCASEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts" -DCASETOOLS="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools" -DCIMEROOT="/home/jenkins/workspace/branch_e3sm_test/cime" -DCOMP_INTERFACE="mct" -DCOMPILER="gnu" -DDEBUG="FALSE" -DEXEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build" -DINCROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lib/include" -DLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lib" -DMACH="nelson" -DMPILIB="mpich" -DNINST_VALUE="c1a1l1i1o1r1g1w1i1e1" -DOS="Linux" -DPIO_VERSION="2" -DSHAREDLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build" -DSMP_PRESENT="FALSE" -DUSE_ESMF_LIB="FALSE" -DUSE_MOAB="FALSE" -DCAM_CONFIG_OPTS="-phys default -scam -nlev 72 -clubb_sgs -nadv 29 -rad rrtmg -chem trop_mam3 -silent -nlev 72 -microphys mg2 -psubcols 4 -cppdefs '-DUWM_MISC -DSILHS'" -DCOMP_LND="elm" -DCOMPARE_TO_NUOPC="FALSE" -DUSE_TRILINOS="FALSE" -DUSE_ALBANY="FALSE" -DUSE_PETSC="FALSE" -DCMAKE_C_COMPILER_WORKS=1 -DCMAKE_CXX_COMPILER_WORKS=1 -DCMAKE_Fortran_COMPILER_WORKS=1 /home/jenkins/workspace/branch_e3sm_test/components -- The C compiler identification is GNU 8.4.0 -- The CXX compiler identification is GNU 10.3.0 -- The Fortran compiler identification is GNU 8.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 - skipped -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 - yes Found component atm model 'eam' -- Enabled Kokkos devices: SERIAL CMake Warning at /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfigCommon.cmake:29 (MESSAGE): The installed Kokkos configuration does not support CXX extensions. Forcing -DCMAKE_CXX_EXTENSIONS=Off Call Stack (most recent call first): /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfig.cmake:43 (INCLUDE) cmake/common_setup.cmake:251 (find_package) cmake/build_model.cmake:5 (include) cmake/atm/CMakeLists.txt:1 (build_model) Warning: Skipping repeated base filename rrtmg_lw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rad.f90 Warning: Skipping repeated base filename rrtmg_sw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_rad.f90 Warning: Skipping repeated base filename vrtmap.F90 for eam/src/utils/vrtmap.F90 Found component lnd model 'elm' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename accumulMod.F90 for elm/src/utils/accumulMod.F90 Found component ice model 'cice' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename ice_communicate.F90 for cice/src/mpi/ice_communicate.F90 Found component ocn model 'docn' -- Enabled Kokkos devices: SERIAL Found component rof model 'srof' -- Enabled Kokkos devices: SERIAL Found component glc model 'sglc' -- Enabled Kokkos devices: SERIAL Found component wav model 'swav' -- Enabled Kokkos devices: SERIAL Found component iac model 'siac' -- Enabled Kokkos devices: SERIAL Found component esp model 'sesp' -- Enabled Kokkos devices: SERIAL -- Enabled Kokkos devices: SERIAL -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CASETOOLS SHAREDLIBROOT SMP_PRESENT USE_MOAB -- Build files have been written to: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld real 2.08 user 1.16 sys 0.93 Building with cmd: /usr/bin/time -p make -j 4 /usr/bin/cmake -S/home/jenkins/workspace/branch_e3sm_test/components -B/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/CMakeFiles /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/CMakeFiles/genf90.dir/DependInfo.cmake --color= Scanning dependencies of target genf90 make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make[2]: Nothing to be done for 'CMakeFiles/genf90.dir/build'. make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 0%] Built target genf90 make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/depend make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/depend make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/depend make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice/CMakeFiles/ice.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn/CMakeFiles/ocn.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 0%] Generating buffer.F90 [ 1%] Generating restUtilMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/buffer.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/restUtilMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/restUtilMod.F90 Scanning dependencies of target ocn make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o Scanning dependencies of target ice make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/build [ 1%] Generating physics_buffer.F90 [ 1%] Generating ncdio_pio.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/physics_buffer.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ncdio_pio.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/ncdio_pio.F90 make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_kinds_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o [ 1%] Generating subcol_utils.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_utils.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/subcol_utils.F90 [ 1%] Generating dynVarMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/CMakeFiles/atm.dir/DependInfo.cmake --color= [ 1%] Generating dynVarTimeInterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeInterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 [ 1%] Generating dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeUninterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/CMakeFiles/lnd.dir/DependInfo.cmake --color= Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o built in 0.094125 seconds Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o built in 0.127058 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_shr_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_shr_mod.mod.stamp GNU [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_cpl_indices.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o Scanning dependencies of target lnd make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o built in 0.140083 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_kinds_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_kinds_mod.mod.stamp GNU [ 1%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_cpl_indices.mod cmake/ice/CMakeFiles/ice.dir/ice_cpl_indices.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o.provides.build [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_communicate.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o Scanning dependencies of target atm make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 1%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o built in 0.114795 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o built in 0.172848 seconds [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_constants.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o [ 1%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o built in 0.398471 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_comp_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o.provides.build [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o built in 0.102324 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain_size.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o built in 0.199097 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_logfile.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90:25:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o built in 0.168278 seconds [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/landunit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o built in 0.101216 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_fileunits.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o built in 0.195587 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/ocn_comp_mct.mod cmake/ocn/CMakeFiles/ocn.dir/ocn_comp_mct.mod.stamp GNU [ 2%] Linking CXX static library libocn.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn && /usr/bin/cmake -P CMakeFiles/ocn.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn && /usr/bin/cmake -E cmake_link_script CMakeFiles/ocn.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libocn.a CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o built in 0.190080 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o built in 0.170524 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffixed-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/mpishorthand.F -o CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o Target libocn.a built in 0.003607 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o built in 0.112308 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libocn.a [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesConstantsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_scam.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o Target libocn.a built in 0.003489 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 2%] Built target ocn /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o.provides.build [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o built in 0.196423 seconds [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o built in 0.191370 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ppgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o built in 0.151303 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/infnan.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o built in 0.152078 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o built in 0.261824 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_scam.mod cmake/ice/CMakeFiles/ice.dir/ice_scam.mod.stamp GNU [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_atmo.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o built in 0.188847 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o.provides.build [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_instance.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o built in 0.153501 seconds Target CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o built in 0.189381 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SpeciesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varsur.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o built in 0.170925 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o.provides.build [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_exit.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o built in 0.206818 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o built in 0.157878 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dycore.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o built in 0.155686 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/thread_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o built in 0.111199 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_broadcast.mod cmake/ice/CMakeFiles/ice.dir/ice_broadcast.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_atmo.mod cmake/ice/CMakeFiles/ice.dir/ice_atmo.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_exit.mod cmake/ice/CMakeFiles/ice.dir/ice_exit.mod.stamp GNU [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_calendar.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o built in 0.155213 seconds Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o built in 0.196113 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_nlUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNBeTRIndicatorMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o built in 0.197140 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/string_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o built in 0.142632 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_blocks.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o built in 0.167199 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o built in 0.162053 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_spacecurve.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o built in 0.212896 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/params_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o built in 0.195829 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/ll_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o built in 0.158238 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o built in 0.193406 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o built in 0.344066 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_calendar.mod cmake/ice/CMakeFiles/ice.dir/ice_calendar.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o built in 0.159947 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_blocks.mod cmake/ice/CMakeFiles/ice.dir/ice_blocks.mod.stamp GNU make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/rof /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof/CMakeFiles/rof.dir/DependInfo.cmake --color= /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_spacecurve.mod cmake/ice/CMakeFiles/ice.dir/ice_spacecurve.mod.stamp GNU Scanning dependencies of target rof Target CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o built in 0.217195 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 3%] Building Fortran object cmake/rof/CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/rof/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.srof -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90 -o CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/domain_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_work.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o built in 0.159643 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o built in 0.102461 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o.provides.build Target CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o built in 0.125485 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/rof/rof_comp_mct.mod cmake/rof/CMakeFiles/rof.dir/rof_comp_mct.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o.provides.build [ 3%] Linking CXX static library librof.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof && /usr/bin/cmake -P CMakeFiles/rof.dir/cmake_clean_target.cmake [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability_tools.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof && /usr/bin/cmake -E cmake_link_script CMakeFiles/rof.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc librof.a CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o Target librof.a built in 0.002923 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o built in 0.202263 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib librof.a [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o built in 0.160766 seconds [ 3%] Built target rof [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/SimpleMathMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/m_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o built in 0.115861 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_work.mod cmake/ice/CMakeFiles/ice.dir/ice_work.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability_tools.mod cmake/ice/CMakeFiles/ice.dir/ice_probability_tools.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o.provides.build [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_distribution.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o built in 0.210081 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o.provides.build [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/pspect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o built in 0.201498 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o built in 0.206381 seconds make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc/CMakeFiles/glc.dir/DependInfo.cmake --color= [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o Scanning dependencies of target glc make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 3%] Building Fortran object cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/glc/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90 -o CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o Target CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o built in 0.114608 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/glc/glc_comp_mct.mod cmake/glc/CMakeFiles/glc.dir/glc_comp_mct.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o built in 0.192898 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o built in 0.161279 seconds [ 3%] Linking CXX static library libglc.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc && /usr/bin/cmake -P CMakeFiles/glc.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc && /usr/bin/cmake -E cmake_link_script CMakeFiles/glc.dir/link.txt --verbose=1 [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/chem_mods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/topounit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libglc.a CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o Target libglc.a built in 0.002896 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libglc.a Target libglc.a built in 0.002936 seconds /usr/bin/cmake -E touch cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 4%] Built target glc [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_varorb.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o built in 0.156107 seconds make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav/CMakeFiles/wav.dir/DependInfo.cmake --color= Scanning dependencies of target wav make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o built in 0.194942 seconds [ 5%] Building Fortran object cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/wav/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90 -o CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o [ 5%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/sslt_sections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o built in 0.151584 seconds [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o Target CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o built in 0.114666 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o built in 0.710441 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/wav/wav_comp_mct.mod cmake/wav/CMakeFiles/wav.dir/wav_comp_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_distribution.mod cmake/ice/CMakeFiles/ice.dir/ice_distribution.mod.stamp GNU [ 6%] Linking CXX static library libwav.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav && /usr/bin/cmake -P CMakeFiles/wav.dir/cmake_clean_target.cmake [ 6%] Building Fortran object 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav && /usr/bin/cmake -E cmake_link_script CMakeFiles/wav.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libwav.a CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o Target libwav.a built in 0.002934 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libwav.a Target libwav.a built in 0.002885 seconds /usr/bin/cmake -E touch cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o built in 0.154523 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o built in 0.224080 seconds [ 6%] Built target wav [ 6%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o [ 6%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/cam_cpl_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o [ 6%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/srf_field_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90:32:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o built in 0.152591 seconds [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o built in 0.200527 seconds make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac/CMakeFiles/iac.dir/DependInfo.cmake --color= Scanning dependencies of target iac make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' Target CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o built in 0.240140 seconds [ 7%] Building Fortran object cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/iac/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.siac -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90 -o CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o built in 0.367052 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_global_reductions.mod cmake/ice/CMakeFiles/ice.dir/ice_global_reductions.mod.stamp GNU [ 8%] Building Fortran object 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-I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o built in 0.153620 seconds [ 8%] Building Fortran object 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o Target CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o built in 0.117726 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/iac/iac_comp_mct.mod cmake/iac/CMakeFiles/iac.dir/iac_comp_mct.mod.stamp GNU [ 8%] Linking CXX static library libiac.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac && /usr/bin/cmake -P CMakeFiles/iac.dir/cmake_clean_target.cmake /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90:61:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac && /usr/bin/cmake -E cmake_link_script CMakeFiles/iac.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libiac.a CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o Target libiac.a built in 0.003425 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libiac.a Target libiac.a built in 0.002912 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o built in 0.222227 seconds /usr/bin/cmake -E touch cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o [ 8%] Built target iac Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o built in 0.154018 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP 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CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o built in 0.188692 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o built in 0.151931 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_methods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o built in 0.228520 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o built in 0.157332 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o built in 0.153630 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o built in 0.232772 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o built in 0.202416 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o built in 0.155740 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o built in 0.153977 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_trislv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o built in 0.155525 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o built in 0.206681 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o built in 0.214930 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_zadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o built in 0.154915 seconds make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp/CMakeFiles/esp.dir/DependInfo.cmake --color= Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o built in 0.153678 seconds Scanning dependencies of target esp make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 10%] Building Fortran object cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/esp/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90 -o CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o built in 0.191971 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME 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CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o Target CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o built in 0.104173 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/esp/esp_comp_mct.mod cmake/esp/CMakeFiles/esp.dir/esp_comp_mct.mod.stamp GNU [ 10%] Linking CXX static library libesp.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp && /usr/bin/cmake -P CMakeFiles/esp.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp && /usr/bin/cmake -E cmake_link_script CMakeFiles/esp.dir/link.txt --verbose=1 Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o built in 0.158139 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libesp.a CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o Target libesp.a built in 0.002864 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libesp.a Target libesp.a built in 0.002883 seconds /usr/bin/cmake -E touch cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 10%] Built target esp Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o built in 0.191361 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jpl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o.provides.build [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o built in 0.154671 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o built in 1.732670 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_boundary.mod cmake/ice/CMakeFiles/ice.dir/ice_boundary.mod.stamp GNU [ 10%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o built in 0.160684 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o built in 0.208125 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o built in 0.217868 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/sv_decomp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o built in 0.195727 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_domain.mod cmake/ice/CMakeFiles/ice.dir/ice_domain.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o built in 0.163416 seconds [ 11%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_state.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o built in 0.166732 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o built in 0.128624 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o built in 0.159885 seconds [ 11%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_pio.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o built in 0.308885 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o built in 0.154199 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o built in 0.176716 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o built in 0.193542 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cmparray_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o built in 0.152900 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o.provides.build [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o built in 0.569830 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_state.mod cmake/ice/CMakeFiles/ice.dir/ice_state.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_pio.mod cmake/ice/CMakeFiles/ice.dir/ice_pio.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_gather_scatter.mod cmake/ice/CMakeFiles/ice.dir/ice_gather_scatter.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o built in 0.157355 seconds [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_flux.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_timers.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o built in 0.151864 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o built in 0.118138 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o built in 0.275958 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbtpar.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o built in 0.241980 seconds [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o built in 0.155693 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o built in 0.155541 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o built in 0.187508 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o.provides.build [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o built in 0.158901 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o built in 0.194056 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o built in 0.196391 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o built in 0.429322 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o built in 0.154515 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o built in 0.153571 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_read_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o built in 0.155692 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o built in 0.232189 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_flux.mod cmake/ice/CMakeFiles/ice.dir/ice_flux.mod.stamp GNU [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o built in 0.193493 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o built in 0.157226 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o built in 0.155362 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o built in 0.385265 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_timers.mod cmake/ice/CMakeFiles/ice.dir/ice_timers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o built in 0.192415 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_read_write.mod cmake/ice/CMakeFiles/ice.dir/ice_read_write.mod.stamp GNU [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_mechred.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o built in 0.160404 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o built in 0.195583 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o built in 0.188620 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o built in 0.158628 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o built in 0.153296 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o built in 0.192734 seconds [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o built in 0.440552 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o built in 0.154107 seconds [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o built in 0.196861 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o built in 0.195549 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o built in 0.156533 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o built in 0.154699 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o built in 0.282766 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o.provides.build [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o built in 0.190786 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o built in 0.152964 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o built in 0.193229 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o built in 0.226981 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_mechred.mod cmake/ice/CMakeFiles/ice.dir/ice_mechred.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_itd.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability.mod cmake/ice/CMakeFiles/ice.dir/ice_probability.mod.stamp GNU [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_grid.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o built in 0.154127 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o built in 0.154658 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o built in 0.189876 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o built in 0.158026 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o built in 0.155329 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o built in 0.193712 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o built in 0.156832 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o built in 0.196254 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o built in 0.157326 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o built in 0.606619 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_grid.mod cmake/ice/CMakeFiles/ice.dir/ice_grid.mod.stamp GNU [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_dyn_evp.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o built in 0.153471 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o built in 0.153049 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o built in 0.191603 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o built in 0.156254 seconds [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o built in 0.158355 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o built in 0.197668 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o built in 0.152513 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o built in 0.193403 seconds [ 16%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_ocean.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o built in 0.155874 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o built in 0.143584 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o built in 0.620222 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o built in 0.161719 seconds [ 17%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_remap.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o built in 0.193079 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o built in 0.187657 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o built in 0.154230 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o built in 0.155450 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o built in 0.150208 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o built in 0.186135 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o built in 0.186259 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o built in 0.155835 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o built in 0.156915 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o built in 0.196775 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o built in 0.157851 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o built in 0.193785 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o built in 0.162210 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o.provides.build [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o built in 0.188383 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o built in 0.152354 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varctl.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varctl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/spmdmod.mod cmake/lnd/CMakeFiles/lnd.dir/spmdmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunit_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/landunit_varcon.mod.stamp GNU [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o built in 1.062267 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_dyn_evp.mod cmake/ice/CMakeFiles/ice.dir/ice_dyn_evp.mod.stamp GNU [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/fileutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_ocean.mod cmake/ice/CMakeFiles/ice.dir/ice_ocean.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o built in 0.187321 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_remap.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_remap.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o.provides.build [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o.provides.build [ 18%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_restart.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o built in 0.190461 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o built in 0.188208 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesconstantsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesconstantsmod.mod.stamp GNU [ 18%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_prescribed_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_constants.mod cmake/lnd/CMakeFiles/lnd.dir/betr_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_ctrl.mod cmake/lnd/CMakeFiles/lnd.dir/betr_ctrl.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o built in 0.197104 seconds [ 19%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o built in 0.168448 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_kind_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_kind_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/speciesmod.mod cmake/lnd/CMakeFiles/lnd.dir/speciesmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o built in 0.188020 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varsur.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varsur.mod.stamp GNU [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIntegratorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o built in 0.335564 seconds [ 20%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIODimensionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o built in 0.620105 seconds [ 20%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_driver.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o built in 0.218354 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o built in 0.217389 seconds [ 21%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_precision.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o [ 21%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/error_code.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o built in 0.179783 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurvemod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurvemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_nlutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_nlutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnbetrindicatormod.mod cmake/lnd/CMakeFiles/lnd.dir/cnbetrindicatormod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_decompmod.mod cmake/lnd/CMakeFiles/lnd.dir/betr_decompmod.mod.stamp GNU [ 21%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o built in 0.189090 seconds [ 21%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o built in 0.199866 seconds [ 21%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/model_flags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o built in 0.157115 seconds [ 21%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameter_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o built in 0.169815 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gbetrtype.mod cmake/lnd/CMakeFiles/lnd.dir/gbetrtype.mod.stamp GNU [ 21%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o built in 0.192354 seconds [ 21%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o built in 0.269144 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o built in 0.545518 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_restart.mod cmake/ice/CMakeFiles/ice.dir/ice_restart.mod.stamp GNU [ 21%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_interfaces.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_prescribed_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_prescribed_mod.mod.stamp GNU [ 21%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_FY.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o built in 0.158177 seconds [ 21%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history_fields.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o built in 0.158116 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_landvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_landvarcontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrhistvartype.mod cmake/lnd/CMakeFiles/lnd.dir/betrhistvartype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/simplemathmod.mod cmake/lnd/CMakeFiles/lnd.dir/simplemathmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_pftvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_pftvarcontype.mod.stamp GNU [ 21%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o built in 0.177262 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o built in 0.134286 seconds [ 21%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o built in 0.232102 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_lvl.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/input_names.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o built in 0.162986 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o built in 0.167388 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mt95.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py 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Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o built in 0.204638 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_varctl.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_varctl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_driver.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_driver.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_varpar.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_varpar.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o.provides.build [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_esmf.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o built in 0.203339 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/elm_cpl_indices.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_finalizeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o built in 0.097372 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_import_export.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o built in 0.156761 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o built in 0.468312 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o.provides.build [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/trb_mtn_stress.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o built in 0.199229 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o.provides.build [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_aerosol.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelptmmod.mod 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/usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o built in 0.216183 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/conditiontype.mod cmake/lnd/CMakeFiles/lnd.dir/conditiontype.mod.stamp GNU [ 22%] Building Fortran object 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-I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_age.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/connectionsettype.mod cmake/lnd/CMakeFiles/lnd.dir/connectionsettype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/couplingvariabletype.mod cmake/lnd/CMakeFiles/lnd.dir/couplingvariabletype.mod.stamp GNU 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_vertical.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesnowauxmod.mod 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-DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesoilauxmod.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesoilauxmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/thermalksptemperaturesoilauxtype.mod cmake/lnd/CMakeFiles/lnd.dir/thermalksptemperaturesoilauxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/arraydimthree.mod cmake/lnd/CMakeFiles/lnd.dir/arraydimthree.mod.stamp GNU /usr/bin/cmake -E 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/code_timer_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o built in 0.854625 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_meltpond.mod cmake/ice/CMakeFiles/ice.dir/ice_meltpond.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_comp_esmf.mod cmake/ice/CMakeFiles/ice.dir/ice_comp_esmf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_import_export.mod cmake/ice/CMakeFiles/ice.dir/ice_import_export.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o built in 0.660804 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_aerosol.mod cmake/ice/CMakeFiles/ice.dir/ice_aerosol.mod.stamp GNU [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/output_netcdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_age.mod cmake/ice/CMakeFiles/ice.dir/ice_age.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_vertical.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_vertical.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_history_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o built in 0.164746 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o built in 0.195593 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o built in 0.192265 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart 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cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fileutils.mod cmake/lnd/CMakeFiles/lnd.dir/fileutils.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o.provides.build [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesGlobals.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o built in 0.366025 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o built in 0.269257 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o.provides.build [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o built in 0.204174 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParametersMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_diagnostics.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/quicksort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o built in 0.159258 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history_write.mod cmake/ice/CMakeFiles/ice.dir/ice_history_write.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatustype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatustype.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o built in 0.209749 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o built in 0.227195 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/xpavg_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o built in 0.193666 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/initcom.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o built in 0.369666 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o built in 0.195317 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/trunc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o built in 0.794363 seconds [ 24%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o built in 0.165897 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o built in 0.198322 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesintegratorsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesintegratorsmod.mod.stamp GNU [ 24%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_slmm.cpp Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o built in 0.953476 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o built in 0.163599 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesiodimensionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesiodimensionsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_diagnostics.mod cmake/ice/CMakeFiles/ice.dir/ice_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history.mod cmake/ice/CMakeFiles/ice.dir/ice_history.mod.stamp GNU [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. 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/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_forcing.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o built in 0.190617 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o built in 0.209940 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp: In static member function ‘static homme::compose::QLT<ES>::Int homme::compose::QLT<ES>::solve(homme::compose::QLT<ES>::Int, const homme::compose::QLT<ES>::VerticalLevelsData&, const Real&)’: /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp:5141:3: warning: no return statement in function returning non-void [-Wreturn-type] 5141 | } | ^ Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o built in 0.204178 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o built in 0.210351 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o built in 1.001044 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_orbital.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o built in 0.119587 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o.provides.build [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o built in 0.226195 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o built in 0.107469 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_forcing.mod cmake/ice/CMakeFiles/ice.dir/ice_forcing.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_orbital.mod cmake/ice/CMakeFiles/ice.dir/ice_orbital.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o.provides.build [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. 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/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_restoring.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o built in 0.219136 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_const_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_const_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_utils.mod cmake/lnd/CMakeFiles/lnd.dir/betr_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/func_data_type_mod.mod cmake/lnd/CMakeFiles/lnd.dir/func_data_type_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/somstatevarupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/somstatevarupdatemod.mod.stamp GNU [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o built in 0.236893 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_shortwave.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o built in 0.190908 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o built in 0.185338 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_phosphorusfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_nitrogenfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_nitrogenfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_phosphorusfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_phosphorusfluxtype.mod.stamp GNU [ 25%] Building Fortran object 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o built in 0.644636 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE_RunMod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o built in 0.206646 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o built in 3.661940 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o built in 0.220325 seconds [ 25%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_test.cpp Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o built in 0.216751 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o built in 0.155895 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o built in 1.028800 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o built in 0.196055 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbasetype.mod.stamp GNU [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_step_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o built in 0.799130 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatussimtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatussimtype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o built in 0.202677 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o.provides.build [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/datetime.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o.provides.build [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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/usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_abortutils.mod cmake/atm/CMakeFiles/atm.dir/cam_abortutils.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o built in 0.160197 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_logfile.mod cmake/atm/CMakeFiles/atm.dir/cam_logfile.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mpishorthand.mod cmake/atm/CMakeFiles/atm.dir/mpishorthand.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/namelist_utils.mod cmake/atm/CMakeFiles/atm.dir/namelist_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ppgrid.mod cmake/atm/CMakeFiles/atm.dir/ppgrid.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o built in 5.102259 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o.provides.build [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/units.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o.provides.build [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/drydep_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o built in 0.193727 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o built in 0.178113 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/infnan.mod cmake/atm/CMakeFiles/atm.dir/infnan.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o built in 0.225026 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_instance.mod cmake/atm/CMakeFiles/atm.dir/cam_instance.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o built in 0.844812 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dycore.mod cmake/atm/CMakeFiles/atm.dir/dycore.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_init.mod cmake/ice/CMakeFiles/ice.dir/ice_init.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/cice_runmod.mod cmake/ice/CMakeFiles/ice.dir/cice_runmod.mod.stamp GNU [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_step_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_step_mod.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/error_messages.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o.provides.build [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE_InitMod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o built in 0.268899 seconds Target CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o built in 0.217539 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o.provides.build [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/interpolate_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/kinds.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o built in 0.316597 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o built in 0.193679 seconds [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o built in 0.420445 seconds [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_mct.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o built in 0.309861 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/geopotential.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o Target 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touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshydrowtfmod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshydrowtfmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateslittermod.mod cmake/lnd/CMakeFiles/lnd.dir/fateslittermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtgenericmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtgenericmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_mpi_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_mpi_mod.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o built in 0.218042 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o built in 0.235003 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o built in 0.217191 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o built in 0.287667 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o built in 0.406958 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeofluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeofluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeophysinputtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeophysinputtype.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o Target CMakeFiles/atm.dir/buffer.F90.o built in 1.320960 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o built in 0.207387 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o built in 0.199059 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_factor.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_factor.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_solve.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_solve.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o built in 0.192262 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_negtrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o built in 0.185299 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_patchtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_patchtype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o built in 0.191702 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_trislv.mod cmake/atm/CMakeFiles/atm.dir/mo_trislv.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o.provides.build [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_calcoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o built in 0.251034 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_zadj.mod cmake/atm/CMakeFiles/atm.dir/mo_zadj.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o built in 0.228411 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_sad_data.mod cmake/atm/CMakeFiles/atm.dir/m_sad_data.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o built in 0.193006 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/GridcellType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o built in 0.194416 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o built in 0.199284 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spehox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jpl.mod cmake/atm/CMakeFiles/atm.dir/mo_jpl.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o built in 0.234237 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_rxt_rates_conv.mod cmake/atm/CMakeFiles/atm.dir/mo_rxt_rates_conv.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o built in 0.220226 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshistoryvariabletype.mod cmake/lnd/CMakeFiles/lnd.dir/fateshistoryvariabletype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesrestartvariablemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesrestartvariablemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeostatetype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeostatetype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_columntype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_columntype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/biogeocontype.mod cmake/lnd/CMakeFiles/lnd.dir/biogeocontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_rxt_id.mod cmake/atm/CMakeFiles/atm.dir/m_rxt_id.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/qsatmod.mod cmake/lnd/CMakeFiles/lnd.dir/qsatmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o built in 0.184366 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o built in 0.332838 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cmparray_mod.mod cmake/atm/CMakeFiles/atm.dir/cmparray_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columntype.mod cmake/lnd/CMakeFiles/lnd.dir/columntype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gridcelltype.mod cmake/lnd/CMakeFiles/lnd.dir/gridcelltype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hirsbtpar.mod cmake/atm/CMakeFiles/atm.dir/hirsbtpar.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parrrsw.mod cmake/atm/CMakeFiles/atm.dir/parrrsw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunittype.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeCon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o built in 0.162594 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o built in 0.201443 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_cld.mod cmake/atm/CMakeFiles/atm.dir/rrlw_cld.mod.stamp GNU [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o built in 0.188022 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o built in 0.795341 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o built in 0.162066 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_cld.mod cmake/atm/CMakeFiles/atm.dir/rrsw_cld.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_bgcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o Target CMakeFiles/lnd.dir/ncdio_pio.F90.o built in 0.801257 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o built in 0.195319 seconds [ 31%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_thType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o built in 0.193887 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/DaylengthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o built in 0.194061 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o built in 0.178912 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o built in 0.275993 seconds [ 32%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o built in 0.194029 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnTemplateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o built in 0.198829 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPriorWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o built in 0.200007 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o built in 0.190092 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o built in 0.191280 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o built in 0.188314 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o built in 0.189737 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynEDMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o built in 0.188557 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o built in 0.169110 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o built in 0.190058 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o built in 0.186043 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o built in 1.384710 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o built in 0.184937 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDTypesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o built in 0.193233 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cndecompcascadecontype.mod cmake/lnd/CMakeFiles/lnd.dir/cndecompcascadecontype.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_vrtqdr.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_vrtqdr.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o built in 0.223798 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_precision.mod cmake/atm/CMakeFiles/atm.dir/clubb_precision.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stat_file_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o built in 0.257997 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lapack_interfaces.mod cmake/atm/CMakeFiles/atm.dir/lapack_interfaces.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/penta_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o built in 0.353971 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/babortutils.mod cmake/lnd/CMakeFiles/lnd.dir/babortutils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_bgctype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_bgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_thtype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_thtype.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initVerticalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o built in 0.204007 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o built in 0.211165 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/daylengthmod.mod cmake/lnd/CMakeFiles/lnd.dir/daylengthmod.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/tridiag_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_arrays.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/math_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o built in 0.576657 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o built in 0.200894 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_timer_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_timer_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 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CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o built in 0.218668 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES 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cmake/atm/CMakeFiles/atm.dir/random_xgc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edtypesmod.mod cmake/lnd/CMakeFiles/lnd.dir/edtypesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_assert_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_assert_mod.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o Target CMakeFiles/lnd.dir/restUtilMod.F90.o built in 0.414075 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o built in 0.472121 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o built in 0.362263 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o built in 0.284710 seconds [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o built in 0.294766 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_dataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o built in 0.193275 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initverticalmod.mod 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/vrtmap.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o built in 0.231548 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o built in 0.267460 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o built in 0.228849 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restutilmod.mod cmake/lnd/CMakeFiles/lnd.dir/restutilmod.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90:1382:0: list = trim(l1)//":"//trim(list) Warning: ‘__builtin_memset’ specified size between 9223372036854775808 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] Target CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o built in 0.168776 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/kineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/kineticsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_timemod.mod cmake/lnd/CMakeFiles/lnd.dir/betr_timemod.mod.stamp GNU [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o built in 0.199869 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/code_timer_module.mod 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/abortutils.mod cmake/lnd/CMakeFiles/lnd.dir/abortutils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinterfacetypesmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinterfacetypesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_time_manager.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mathfuncmod.mod cmake/lnd/CMakeFiles/lnd.dir/mathfuncmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/soilorder_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o built in 0.216056 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanParamsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o built in 0.275277 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParametersInterface.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o built in 0.394229 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/paramUtilMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o built in 0.291846 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o built in 0.234166 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o built in 0.186599 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o built in 0.713854 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o built in 0.312401 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/ChecksBalancesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/FuncPedotransferMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o built in 0.167364 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o built in 0.206557 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/quadraticMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/organicFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o built in 0.522850 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o built in 0.167370 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SharedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o built in 0.176407 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o built in 0.190711 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o built in 0.191752 seconds [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o built in 0.231617 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpCompetType.F90.o built in 0.220839 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerboundarycondtype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerboundarycondtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o built in 0.318468 seconds [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o built in 0.294934 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o built in 0.245983 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsetmod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsetmod.mod.stamp GNU [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsetwatisomod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsetwatisomod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o built in 0.717959 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o built in 0.239048 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ChemStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o built in 0.384074 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o built in 0.169060 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/LSparseMatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o built in 0.569599 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o built in 0.240507 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdGathScatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o built in 0.221206 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/marsaglia.mod cmake/atm/CMakeFiles/atm.dir/marsaglia.mod.stamp GNU [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainLateralMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o built in 0.204797 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o built in 0.166028 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/quicksort.mod cmake/atm/CMakeFiles/atm.dir/quicksort.mod.stamp GNU [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o built in 0.309299 seconds [ 35%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux 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seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initInterp.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o built in 0.357104 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/xpavg_mod.mod cmake/atm/CMakeFiles/atm.dir/xpavg_mod.mod.stamp GNU [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BandDiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o built in 0.213297 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o.provides.build /usr/bin/cmake -E touch 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o.provides.build [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/apex_subs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o built in 0.557077 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/msise00.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o built in 0.166841 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ColumnMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o built in 0.212072 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/LandunitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o built in 0.651133 seconds [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/PatchMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o built in 0.475795 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o built in 0.191091 seconds [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cpslec.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o built in 1.531605 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o.provides.build [ 36%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/bnddyi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o built in 0.179906 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clm_time_manager.mod cmake/lnd/CMakeFiles/lnd.dir/clm_time_manager.mod.stamp GNU [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o built in 0.205688 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o built in 0.201672 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/AnnualFluxDribbler.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o built in 0.213505 seconds [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/wrap_mpi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o built in 0.241387 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share 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cmake/lnd/CMakeFiles/lnd.dir/dynpatchstateupdatermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/units.mod cmake/atm/CMakeFiles/atm.dir/units.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilorder_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/soilorder_varcon.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o built in 0.173461 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/drydep_mod.mod cmake/atm/CMakeFiles/atm.dir/drydep_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_messages.mod cmake/atm/CMakeFiles/atm.dir/error_messages.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanparamstype.mod cmake/lnd/CMakeFiles/lnd.dir/urbanparamstype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesparametersinterface.mod cmake/lnd/CMakeFiles/lnd.dir/fatesparametersinterface.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o built in 0.929904 seconds 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o built in 0.411767 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunitmod.mod cmake/lnd/CMakeFiles/lnd.dir/landunitmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/patchmod.mod cmake/lnd/CMakeFiles/lnd.dir/patchmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o built in 0.272414 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o.provides.build [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 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CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o built in 0.292217 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_reftra.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_reftra.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/pftvarcon.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/accumulMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o built in 0.306146 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/array_index.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o built in 0.321535 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounittype.mod cmake/lnd/CMakeFiles/lnd.dir/topounittype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualfluxdribbler.mod cmake/lnd/CMakeFiles/lnd.dir/annualfluxdribbler.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ch4varcon.mod cmake/lnd/CMakeFiles/lnd.dir/ch4varcon.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationPropertiesType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o built in 0.195107 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o built in 0.212991 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o.provides.build [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/RootBiophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/endian.mod cmake/atm/CMakeFiles/atm.dir/endian.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o built in 0.205261 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o built in 0.233626 seconds [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o built in 0.192021 seconds [ 39%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o built in 0.225304 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o built in 0.244556 seconds [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/filterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o built in 0.260049 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_5.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_5.mod.stamp GNU [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o built in 0.179079 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o.provides.build [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o built in 0.761909 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o.provides.build [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o built in 0.189900 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vrtmap_mod.mod cmake/atm/CMakeFiles/atm.dir/vrtmap_mod.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o built in 0.176292 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o built in 0.599761 seconds [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o built in 0.177406 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o built in 0.185972 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o built in 0.184619 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o built in 0.218345 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scyc.mod cmake/atm/CMakeFiles/atm.dir/scyc.mod.stamp GNU [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o built in 0.200296 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initSubgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o built in 0.239850 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridrestmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridrestmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BandDiagonalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o built in 0.240096 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_wvn.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/TracerBalanceMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_cldprop.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o.provides.build [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initSubgridMod.F90.o built in 0.329123 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/accumulmod.mod cmake/lnd/CMakeFiles/lnd.dir/accumulmod.mod.stamp GNU [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridAveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o built in 0.312168 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationpropertiestype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationpropertiestype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edparamsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessynchronizedparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessynchronizedparamsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o built in 0.372985 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfrdutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfrdutilsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o built in 0.186727 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/rootbiophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/rootbiophysmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o built in 0.190849 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpforctype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpforctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/odemod.mod cmake/lnd/CMakeFiles/lnd.dir/odemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantsoilbgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantsoilbgcmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/filtermod.mod cmake/lnd/CMakeFiles/lnd.dir/filtermod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/transportmod.mod cmake/lnd/CMakeFiles/lnd.dir/transportmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bhistfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/bhistfilemod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o built in 0.206087 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompinitmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o.provides.build [ 43%] 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ComputeSeedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod 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touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/buffer.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initsubgridmod.mod cmake/lnd/CMakeFiles/lnd.dir/initsubgridmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o built in 0.201634 seconds [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/spmd_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o built in 7.489093 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_mod.mod cmake/atm/CMakeFiles/atm.dir/time_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tracname.mod cmake/atm/CMakeFiles/atm.dir/mo_tracname.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_setrxt.mod.stamp GNU /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/spmd_utils.F90:53:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o.provides.build [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol 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seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o.provides.build [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDPftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o built in 0.394003 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynfilemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessizeagetypeindicesmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessizeagetypeindicesmod.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o built in 0.429765 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o built in 0.230758 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o built in 0.177032 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o built in 0.318880 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o built in 0.320809 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_pflotranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o built in 0.725059 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o built in 0.193793 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o built in 0.750646 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF 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CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o built in 1.110363 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfrdmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfrdmod.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/T_in_K_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o built in 0.217950 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o.provides.build [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_wrap.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o built in 0.452580 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o built in 0.210349 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o.provides.build [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_tunable.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o.provides.build [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/histFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o built in 0.381158 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/edpftvarcon.mod.stamp GNU [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/index_mapping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o built in 0.211058 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarMod.F90 -o CMakeFiles/lnd.dir/dynVarMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o built in 0.605714 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o Target CMakeFiles/lnd.dir/dynVarMod.F90.o built in 0.250368 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o built in 1.229300 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o built in 1.853804 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o built in 0.215547 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_semi_implicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o built in 0.356076 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire/SFMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o built in 1.418676 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o built in 0.210164 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpdecomptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpdecomptype.mod.stamp GNU [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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-DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/LY93_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o built in 0.376566 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o built in 0.224883 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantsoilbgccnptype.mod cmake/lnd/CMakeFiles/lnd.dir/plantsoilbgccnptype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o built in 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_tsdadg_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o built in 0.251124 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerparamsmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o built in 0.250690 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sigma_sqd_w_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o built in 6.425035 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o built in 0.214402 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calendar.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o built in 0.202241 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/matrix_operations.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o built in 0.550481 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o built in 0.579601 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diagnose_correlations_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o built in 0.286595 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o built in 0.238665 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_datamod.mod.stamp GNU [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/Nc_Ncn_eqns.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o built in 0.268934 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_diffusion.mod cmake/atm/CMakeFiles/atm.dir/gw_diffusion.mod.stamp GNU /usr/bin/cmake -E touch 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/generate_uniform_sample_module.F90 -o 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-DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero 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Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o built in 0.217597 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o.provides.build [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o built in 0.201354 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o built in 0.232807 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesplanthydraulicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesplanthydraulicsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesparameterderivedmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesparameterderivedmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessoilbgcfluxmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessoilbgcfluxmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sfmainmod.mod cmake/lnd/CMakeFiles/lnd.dir/sfmainmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_utils.mod cmake/atm/CMakeFiles/atm.dir/spmd_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sim_dat.mod cmake/atm/CMakeFiles/atm.dir/mo_sim_dat.mod.stamp GNU [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/EnergyFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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cmake/atm/CMakeFiles/atm.dir/mcica_subcol_gen_sw.mod.stamp GNU [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SolarAbsorbedType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o built in 0.312155 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o built in 0.726092 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/file_functions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o built in 0.218123 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/interpolation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o built in 0.733835 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o built in 0.573206 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o built in 0.252395 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o built in 0.397730 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_type.mod cmake/atm/CMakeFiles/atm.dir/stats_type.mod.stamp GNU [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o built in 0.518717 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_utilities.mod cmake/atm/CMakeFiles/atm.dir/pdf_utilities.mod.stamp GNU [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o built in 0.383741 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/est_kessler_microphys_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o built in 0.495722 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/generate_uniform_sample_module.mod cmake/atm/CMakeFiles/atm.dir/generate_uniform_sample_module.mod.stamp GNU [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o built in 0.361839 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_map_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o Target 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/time_manager.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o built in 0.502322 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopebgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopebgcreactionstype.mod.stamp GNU [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/ioFileMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o built in 0.380864 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mockbgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/mockbgcreactionstype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o.provides.build [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o built in 0.213297 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glcDiagnosticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o built in 0.195706 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/file_functions.mod cmake/atm/CMakeFiles/atm.dir/file_functions.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o built in 0.216684 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolation.mod cmake/atm/CMakeFiles/atm.dir/interpolation.mod.stamp GNU [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o built in 0.223267 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/saturation.mod cmake/atm/CMakeFiles/atm.dir/saturation.mod.stamp GNU [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o Target CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o built in 0.219659 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o built in 2.065955 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_variables.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o built in 9.084077 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o built in 0.231271 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o built in 0.214287 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/matrix_solver_wrapper.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o built in 0.198406 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf_main.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o built in 0.171209 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o built in 1.739121 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o built in 0.257991 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o built in 0.182750 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_pdf.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o.provides.build [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/input_reader.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o built in 0.184866 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_common.mod cmake/atm/CMakeFiles/atm.dir/gw_common.mod.stamp GNU [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o built in 0.178272 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/est_kessler_microphys_module.mod cmake/atm/CMakeFiles/atm.dir/est_kessler_microphys_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o.provides.build [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_importance_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o built in 0.183002 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o built in 0.570425 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o.provides.build [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o built in 0.352765 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o.provides.build [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/CNStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o built in 0.367325 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physconst.mod cmake/atm/CMakeFiles/atm.dir/physconst.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_control_mod.mod cmake/atm/CMakeFiles/atm.dir/cam_control_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_map_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_map_utils.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/comsrf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o built in 0.367465 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o built in 0.238206 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o built in 0.247229 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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[ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/glb_verif_smry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o built in 1.092825 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_manager.mod cmake/atm/CMakeFiles/atm.dir/time_manager.mod.stamp GNU [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o built in 0.454298 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iofilemod.mod cmake/atm/CMakeFiles/atm.dir/iofilemod.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/time_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o built in 0.517736 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/filenames.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o built in 0.194912 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clmfatesparaminterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/clmfatesparaminterfacemod.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o built in 1.807141 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o built in 0.240143 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o built in 0.189243 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusfluxtype.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/orbit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o built in 0.256627 seconds [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDBtranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o Target CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o built in 0.205255 seconds [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbt.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o built in 0.196677 seconds [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o built in 0.254481 seconds [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o built in 0.250159 seconds [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o built in 2.160857 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rad.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rad.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/energyfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/energyfluxtype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o built in 0.389654 seconds [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o built in 0.290466 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshistoryinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshistoryinterfacemod.mod.stamp GNU [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o built in 0.709756 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/frictionvelocitytype.mod cmake/lnd/CMakeFiles/lnd.dir/frictionvelocitytype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/grid_class.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o built in 0.697479 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesistype.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesistype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_type_utilities.mod cmake/atm/CMakeFiles/atm.dir/stats_type_utilities.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilstatetype.mod 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_pdf_main.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o built in 0.434521 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/waterfluxtype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o built in 0.294420 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosoltype.mod cmake/lnd/CMakeFiles/lnd.dir/aerosoltype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o built in 0.326789 seconds [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o built in 0.202394 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridweightsmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridweightsmod.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o built in 0.238850 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glcdiagnosticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/glcdiagnosticsmod.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o built in 0.205725 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunitdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/landunitdatatype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o built in 0.203636 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/sedfluxtype.mod.stamp GNU [ 52%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o built in 0.219096 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o.provides.build [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o built in 2.074048 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_reader.mod cmake/atm/CMakeFiles/atm.dir/input_reader.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynLandunitAreaMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o built in 0.751272 seconds [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/precipitation_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o built in 0.195104 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvartimeinterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvartimeinterpmod.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/reweightMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o built in 0.697197 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_columntype_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_columntype_exchange.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o built in 0.174188 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_filter_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_filter_exchange.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_convect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_landunit_exchange.mod cmake/lnd/CMakeFiles/lnd.dir/emi_landunit_exchange.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o built in 0.389852 seconds [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o built in 0.206586 seconds [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_front.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o built in 0.336046 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelbetrmod.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_oro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o built in 0.273374 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelbasetype.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initGridCellsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o built in 0.249537 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o.provides.build [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/output_2D_samples_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o built in 0.244392 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_importance_sample_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_importance_sample_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o built in 0.240607 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o built in 1.350548 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_chemstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_chemstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o.provides.build /usr/bin/cmake -E touch 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/wei96.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o built in 0.258067 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o.provides.build [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tsinti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o.provides.build [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_constants.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopystatetype.mod cmake/lnd/CMakeFiles/lnd.dir/canopystatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenfluxtype.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o built in 0.197169 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o built in 0.197844 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndtype.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndtype.mod.stamp GNU [ 53%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/quadrature_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edbtranmod.mod cmake/lnd/CMakeFiles/lnd.dir/edbtranmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/filenames.mod cmake/atm/CMakeFiles/atm.dir/filenames.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edcohortdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edcohortdynamicsmod.mod.stamp GNU [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/orbit.mod cmake/atm/CMakeFiles/atm.dir/orbit.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o built in 0.320033 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hirsbt.mod cmake/atm/CMakeFiles/atm.dir/hirsbt.mod.stamp GNU [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o built in 0.487280 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/precipitation_fraction.mod cmake/atm/CMakeFiles/atm.dir/precipitation_fraction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_convect.mod cmake/atm/CMakeFiles/atm.dir/gw_convect.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/frictionvelocitymod.mod cmake/lnd/CMakeFiles/lnd.dir/frictionvelocitymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_front.mod cmake/atm/CMakeFiles/atm.dir/gw_front.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o built in 0.491809 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_oro.mod cmake/atm/CMakeFiles/atm.dir/gw_oro.mod.stamp GNU [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VerticalProfileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glc2lndMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o built in 0.284518 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/lh_microphys_var_covar_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o built in 0.352312 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynlandunitareamod.mod cmake/lnd/CMakeFiles/lnd.dir/dynlandunitareamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/reweightmod.mod cmake/lnd/CMakeFiles/lnd.dir/reweightmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o.provides.build [ 56%] 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o built in 0.272880 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o built in 0.240539 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o.provides.build [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o built in 0.228231 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilhydrologytype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilhydrologytype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o.provides.build [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_constants.mod cmake/atm/CMakeFiles/atm.dir/mo_constants.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o built in 0.203929 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_sediment_mod.mod cmake/atm/CMakeFiles/atm.dir/dust_sediment_mod.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dimensions_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o built in 0.185352 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_control.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o built in 0.199706 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initgridcellsmod.mod cmake/lnd/CMakeFiles/lnd.dir/initgridcellsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/quadrature_mod.mod cmake/atm/CMakeFiles/atm.dir/quadrature_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gas_wetdep_opts.mod cmake/atm/CMakeFiles/atm.dir/gas_wetdep_opts.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o built in 0.247317 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airmas.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveall.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o built in 0.294900 seconds [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o built in 0.200307 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o built in 0.205757 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o.provides.build [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveo3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ps2str.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o built in 0.188316 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o built in 0.261963 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setair.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lymana.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o built in 0.298974 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelen.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o built in 0.211313 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o built in 0.214023 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelab.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sphers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o built in 0.203568 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_helper_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o built in 0.194597 seconds [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o built in 0.212171 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o built in 0.205626 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mean_adv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o built in 0.272301 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sponge_layer_damping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o built in 0.458796 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/fill_holes.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o built in 0.228486 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pos_definite_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o built in 0.235761 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/turbulent_adv_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o built in 0.260622 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o built in 0.381591 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o built in 0.264561 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenstatetype.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_pressure.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o built in 0.256293 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstatetype.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/numerical_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o built in 0.223014 seconds [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o built in 0.563267 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o built in 0.255975 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/skx_module.mod cmake/atm/CMakeFiles/atm.dir/skx_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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-E cmake_copy_f90_mod cmake/lnd/glc2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/glc2lndmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o built in 0.516702 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_exchangemod.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/element_state.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o built in 0.241318 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_ps2str.mod cmake/atm/CMakeFiles/atm.dir/mo_ps2str.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesbstressmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesbstressmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setair.mod cmake/atm/CMakeFiles/atm.dir/mo_setair.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o.provides.build [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setcld.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o built in 0.202681 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lymana.mod cmake/atm/CMakeFiles/atm.dir/mo_lymana.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o built in 0.213336 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelen.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelen.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonstatetype.mod.stamp GNU [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setozo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelab.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelab.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edmortalityfunctionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edmortalityfunctionsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sphers.mod cmake/atm/CMakeFiles/atm.dir/mo_sphers.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o.provides.build [ 59%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o built in 0.272759 seconds [ 59%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o built in 0.201160 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o.provides.build [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o built in 0.198450 seconds [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cldoptics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o built in 0.197463 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_helper_module.mod cmake/atm/CMakeFiles/atm.dir/advance_helper_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diffusion.mod cmake/atm/CMakeFiles/atm.dir/diffusion.mod.stamp GNU [ 59%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o built in 0.228590 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mean_adv.mod cmake/atm/CMakeFiles/atm.dir/mean_adv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sponge_layer_damping.mod cmake/atm/CMakeFiles/atm.dir/sponge_layer_damping.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/fill_holes.mod cmake/atm/CMakeFiles/atm.dir/fill_holes.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sfc_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_clubb_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o built in 1.373497 seconds [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o built in 0.300010 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_exchangemod.mod.stamp GNU [ 60%] Building Fortran object 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg1_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o built in 0.254530 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpatchdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edpatchdynamicsmod.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o built in 0.315743 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgcreactionscentecacnptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgcreactionscentecacnptype.mod.stamp GNU [ 60%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_driver_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o built in 1.573924 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o.provides.build [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o built in 0.845007 seconds [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInventoryInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o built in 0.476592 seconds [ 60%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o built in 0.588989 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edcanopystructuremod.mod cmake/lnd/CMakeFiles/lnd.dir/edcanopystructuremod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinventoryinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinventoryinitmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o built in 0.379119 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o built in 0.596868 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o built in 3.071888 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o built in 0.535409 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/applicationsfactory.mod cmake/lnd/CMakeFiles/lnd.dir/applicationsfactory.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o.provides.build [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/massborrow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o built in 0.791021 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o built in 0.206056 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edmainmod.mod cmake/lnd/CMakeFiles/lnd.dir/edmainmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldaero_mod.mod cmake/atm/CMakeFiles/atm.dir/cldaero_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edsurfaceradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/edsurfaceradiationmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o built in 0.218099 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_common.mod cmake/atm/CMakeFiles/atm.dir/dust_common.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesplantrespphotosynthmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesplantrespphotosynthmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_state.mod cmake/atm/CMakeFiles/atm.dir/element_state.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/parallel_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chem_utls.mod cmake/atm/CMakeFiles/atm.dir/mo_chem_utls.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o built in 0.250705 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_xsections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o built in 0.378937 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o built in 0.270943 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_rtlink.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setcld.mod cmake/atm/CMakeFiles/atm.dir/mo_setcld.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o built in 0.250007 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setozo.mod cmake/atm/CMakeFiles/atm.dir/mo_setozo.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o.provides.build [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/set_cp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o built in 0.331391 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/edinitmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/almbetrnlmod.mod cmake/lnd/CMakeFiles/lnd.dir/almbetrnlmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cldoptics.mod cmake/atm/CMakeFiles/atm.dir/pkg_cldoptics.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util 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CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o built in 0.199397 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o built in 0.570571 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropHarvestPoolsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o built in 0.275204 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_clubb_utilities.mod cmake/atm/CMakeFiles/atm.dir/stats_clubb_utilities.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceResistanceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o built in 1.585993 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittVertTranspMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o built in 0.249349 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_0.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o built in 0.470563 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_utils.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o built in 0.454016 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/latin_hypercube_driver_module.mod cmake/atm/CMakeFiles/atm.dir/latin_hypercube_driver_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DryDepVelocity.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DUSTMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o built in 0.347234 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/WoodProductsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o built in 0.421242 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ErosionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o built in 0.278587 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o.provides.build [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o built in 2.202525 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parallel_mod.mod cmake/atm/CMakeFiles/atm.dir/parallel_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o built in 0.246919 seconds [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/charge_neutrality.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o built in 0.234980 seconds [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mass_xforms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o built in 0.840955 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o built in 0.308813 seconds [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_mean_mass.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterBudgetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o built in 0.221903 seconds [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o built in 0.214879 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_xsections.mod cmake/atm/CMakeFiles/atm.dir/mo_xsections.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_rtlink.mod cmake/atm/CMakeFiles/atm.dir/mo_rtlink.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/set_cp.mod cmake/atm/CMakeFiles/atm.dir/set_cp.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clip_explicit.mod cmake/atm/CMakeFiles/atm.dir/clip_explicit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mixing_length.mod cmake/atm/CMakeFiles/atm.dir/mixing_length.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_closure_module.mod cmake/atm/CMakeFiles/atm.dir/pdf_closure_module.mod.stamp GNU [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/setup_clubb_pdf_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o built in 0.459272 seconds [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg2_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o built in 1.062173 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o.provides.build [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o built in 0.300420 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesrestartinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesrestartinterfacemod.mod.stamp GNU [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/coordinate_systems_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o built in 0.290236 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybrid_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o Target 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-DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/control_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o built in 0.228616 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceresistancemod.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/spmd_dyn.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o built in 0.278573 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittverttranspmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittverttranspmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/charge_neutrality.mod 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_pchem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o built in 0.219699 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/woodproductsmod.mod cmake/lnd/CMakeFiles/lnd.dir/woodproductsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_windm_edsclrm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o built in 0.220370 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xm_wpxp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o built in 2.045634 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp2_xpyp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o built in 3.121332 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/setup_clubb_pdf_params.mod cmake/atm/CMakeFiles/atm.dir/setup_clubb_pdf_params.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_api_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_api_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/waterbudgetmod.mod cmake/lnd/CMakeFiles/lnd.dir/waterbudgetmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/coordinate_systems_mod.mod cmake/atm/CMakeFiles/atm.dir/coordinate_systems_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybrid_mod.mod cmake/atm/CMakeFiles/atm.dir/hybrid_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanalbedomod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanalbedomod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/control_mod.mod cmake/atm/CMakeFiles/atm.dir/control_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_dyn.mod cmake/atm/CMakeFiles/atm.dir/spmd_dyn.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_pchem.mod cmake/atm/CMakeFiles/atm.dir/mo_pchem.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_windm_edsclrm_module.mod cmake/atm/CMakeFiles/atm.dir/advance_windm_edsclrm_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_wp2_wp3_module.mod cmake/atm/CMakeFiles/atm.dir/advance_wp2_wp3_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xm_wpxp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xm_wpxp_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edgetype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o built in 0.209912 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/reduction_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o built in 2.670696 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gridgraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o built in 0.296944 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybvcoord_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o built in 10.969663 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationdatatype.mod.stamp GNU [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TemperatureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o built in 0.248731 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o built in 0.302282 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynHarvestMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AnnualUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o built in 0.270796 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o.provides.build [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/C14DecayMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o built in 0.403584 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xp2_xpyp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xp2_xpyp_module.mod.stamp GNU [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonIsoFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o built in 0.298460 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edgetype_mod.mod cmake/atm/CMakeFiles/atm.dir/edgetype_mod.mod.stamp GNU [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o built in 0.787451 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/reduction_mod.mod cmake/atm/CMakeFiles/atm.dir/reduction_mod.mod.stamp GNU [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o built in 0.694945 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gridgraph_mod.mod cmake/atm/CMakeFiles/atm.dir/gridgraph_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o built in 0.409503 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybvcoord_mod.mod cmake/atm/CMakeFiles/atm.dir/hybvcoord_mod.mod.stamp GNU [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNGapMortalityBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metis_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o built in 0.415195 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/vertremap_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o built in 0.300424 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o built in 0.529381 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_clubb_core_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o built in 0.421942 seconds [ 64%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o built in 0.313711 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o.provides.build [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o built in 0.273665 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o.provides.build [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GrowthRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o built in 0.261456 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o.provides.build [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o built in 9.697860 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o built in 0.277687 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o.provides.build [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PrecisionControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o built in 0.296697 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o.provides.build [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemBalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o built in 0.396067 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/pmgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o built in 0.197840 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GapMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o built in 0.432414 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/element_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o built in 0.237876 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metagraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o built in 0.605798 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/spacecurve_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o built in 0.547423 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o built in 0.285674 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o built in 0.315602 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metis_mod.mod cmake/atm/CMakeFiles/atm.dir/metis_mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o built in 0.596491 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o built in 0.487141 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_base.mod cmake/atm/CMakeFiles/atm.dir/vertremap_base.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o built in 0.317272 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg2_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg2_0.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c 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cmake/lnd/CMakeFiles/lnd.dir/dynharvestmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_mod.mod cmake/atm/CMakeFiles/atm.dir/element_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/annualupdatemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metagraph_mod.mod cmake/atm/CMakeFiles/atm.dir/metagraph_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/c14decaymod.mod cmake/lnd/CMakeFiles/lnd.dir/c14decaymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spacecurve_mod.mod cmake/atm/CMakeFiles/atm.dir/spacecurve_mod.mod.stamp GNU [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CH4Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o built in 0.327046 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/derivative_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o built in 1.289969 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/eos.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o built in 0.731557 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonisofluxmod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonisofluxmod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/rgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o built in 0.284559 seconds Target CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o built in 0.190760 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o.provides.build [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cngapmortalitybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cngapmortalitybetrmod.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate1betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate1betrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate2betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate2betrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate3betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate3betrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o.provides.build [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilMoistStressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o built in 0.375819 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o built in 0.430115 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/getinterpnetcdfdata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o built in 0.245100 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowSnicarMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o built in 0.550174 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedtype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o built in 0.197543 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/growthrespmod.mod cmake/lnd/CMakeFiles/lnd.dir/growthrespmod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cube_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o Target 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MaintenanceRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o built in 5.249109 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o built in 0.324241 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eos.mod cmake/atm/CMakeFiles/atm.dir/eos.mod.stamp GNU [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VOCEmissionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o built in 0.325354 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/planar_mod.mod cmake/atm/CMakeFiles/atm.dir/planar_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate1mod.mod.stamp GNU [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/vertremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o built in 0.893556 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_clubb_core_module.mod cmake/atm/CMakeFiles/atm.dir/advance_clubb_core_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/precisioncontrolmod.mod 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/getinterpnetcdfdata.mod cmake/atm/CMakeFiles/atm.dir/getinterpnetcdfdata.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/schedtype_mod.mod cmake/atm/CMakeFiles/atm.dir/schedtype_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cube_mod.mod cmake/atm/CMakeFiles/atm.dir/cube_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o built in 0.567056 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ecosystembalancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/ecosystembalancecheckmod.mod.stamp GNU [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/derivative_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/element_ops.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o built in 0.315118 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gapmortalitymod.mod cmake/lnd/CMakeFiles/lnd.dir/gapmortalitymod.mod.stamp GNU [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/zoltan_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o built in 0.198381 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate1mod.mod.stamp GNU [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/scalable_grid_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o built in 0.265859 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate2mod.mod.stamp GNU [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/geometry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o built in 1.502573 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o built in 0.477951 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o.provides.build [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o.provides.build [ 68%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/ActiveLayerMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o built in 0.253835 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgridadjustmentsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgridadjustmentsmod.mod.stamp GNU [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TotalWaterAndHeatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o built in 0.555349 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynInitColumnsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o built in 0.256492 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_mod.mod cmake/atm/CMakeFiles/atm.dir/vertremap_mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o built in 0.340166 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o built in 0.447939 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_exchangemod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o built in 0.274439 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o.provides.build [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o built in 0.288693 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o.provides.build [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedYieldMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o built in 0.343906 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o.provides.build [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o built in 0.616717 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o.provides.build [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o built in 0.923710 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o built in 0.463075 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/scamMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o built in 0.500649 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o.provides.build [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edge_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o built in 0.637383 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/derivative_mod.mod cmake/atm/CMakeFiles/atm.dir/derivative_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o built in 0.968454 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_ops.mod cmake/atm/CMakeFiles/atm.dir/element_ops.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o.provides.build 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elmfates_interfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o built in 1.944077 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scalable_grid_init_mod.mod cmake/atm/CMakeFiles/atm.dir/scalable_grid_init_mod.mod.stamp GNU /usr/bin/cmake -E touch 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Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM 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cmake/atm/CMakeFiles/atm.dir/schedule_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopyhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/canopyhydrologymod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o built in 0.939016 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_api_module.mod cmake/atm/CMakeFiles/atm.dir/clubb_api_module.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_derived_type_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2glcmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2glcmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o built in 0.234192 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scammod.mod cmake/atm/CMakeFiles/atm.dir/scammod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod_base.mod cmake/atm/CMakeFiles/atm.dir/edge_mod_base.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o built in 0.470803 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/horizontal_interpolate.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o built in 0.259721 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vocemissionmod.mod cmake/lnd/CMakeFiles/lnd.dir/vocemissionmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/readinitial.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o built in 0.804006 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o built in 1.796641 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o built in 0.208575 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/activelayermod.mod cmake/lnd/CMakeFiles/lnd.dir/activelayermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/imex_mod.mod cmake/atm/CMakeFiles/atm.dir/imex_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/planar_mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/planar_mesh_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/totalwaterandheatmod.mod cmake/lnd/CMakeFiles/lnd.dir/totalwaterandheatmod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/se_single_column_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o built in 0.685569 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyninitcolumnsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dyninitcolumnsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_temperaturetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_temperaturetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BareGroundFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o built in 0.307939 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_derived_type_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_derived_type_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o built in 0.543021 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o built in 0.469094 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/mesh_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/edge_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o /usr/bin/cmake -E touch 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o built in 0.758160 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/se_single_column_mod.mod cmake/atm/CMakeFiles/atm.dir/se_single_column_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o built in 0.196404 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedyieldmod.mod cmake/lnd/CMakeFiles/lnd.dir/sedyieldmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilfluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o built in 0.564432 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_pio_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_pio_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod.mod cmake/atm/CMakeFiles/atm.dir/edge_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanfluxesmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/interpolate_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_solar_parms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o built in 0.262287 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanradiationmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/solar_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o built in 0.674757 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/input_data_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o built in 0.588624 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_prop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o built in 0.330568 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/euvac.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o built in 0.343564 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_seto2.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o built in 1.167448 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o built in 0.232252 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/croptype.mod cmake/lnd/CMakeFiles/lnd.dir/croptype.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tuv_inti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elmfatesinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/elmfatesinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o built in 0.283726 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o built in 0.545532 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o built in 0.295448 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spedata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o built in 0.207603 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeCNMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o built in 0.518836 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_initfiles.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o built in 0.337843 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrifdenitrifmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrifdenitrifmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_comp_esmf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o built in 0.222762 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o built in 0.197303 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_grid_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o built in 0.774966 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/bndry_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o built in 0.707378 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolate_mod.mod cmake/atm/CMakeFiles/atm.dir/interpolate_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solar_parms.mod cmake/atm/CMakeFiles/atm.dir/mo_solar_parms.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solar_data.mod cmake/atm/CMakeFiles/atm.dir/solar_data.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o built in 0.462754 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/RootDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o built in 0.390619 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mag_parms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o built in 1.200793 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/euvac.mod cmake/atm/CMakeFiles/atm.dir/euvac.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jshort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o built in 0.197892 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyFluxLimitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o built in 0.624300 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jlong.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o built in 1.318812 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_seto2.mod cmake/atm/CMakeFiles/atm.dir/mo_seto2.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tuv_inti.mod cmake/atm/CMakeFiles/atm.dir/mo_tuv_inti.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VegStructUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o built in 2.132166 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spedata.mod cmake/atm/CMakeFiles/atm.dir/spedata.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeochemmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeochemmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE 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-ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o built in 0.661679 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AllocationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jlong.mod cmake/atm/CMakeFiles/atm.dir/mo_jlong.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompcascadebgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompcascadebgcmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/efield.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o built in 0.217649 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompcascadecnmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompcascadecnmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfacealbedomod.mod cmake/lnd/CMakeFiles/lnd.dir/surfacealbedomod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogendynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogendynamicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrsimulationalm.mod cmake/lnd/CMakeFiles/lnd.dir/betrsimulationalm.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rad_solar_var.mod cmake/atm/CMakeFiles/atm.dir/rad_solar_var.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/rootdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/rootdynamicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o built in 0.227942 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologyfluxlimitmod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologyfluxlimitmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/bndry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o built in 0.359377 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o built in 0.195982 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/ncdio_atm.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o built in 0.681790 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setz.mod cmake/atm/CMakeFiles/atm.dir/mo_setz.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/efield.mod cmake/atm/CMakeFiles/atm.dir/efield.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegstructupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/vegstructupdatemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o built in 0.490467 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeophysmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_support.mod cmake/atm/CMakeFiles/atm.dir/cam_history_support.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyncropfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dyncropfilemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ncdio_atm.mod cmake/atm/CMakeFiles/atm.dir/ncdio_atm.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mass_matrix_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_theta.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o built in 0.229179 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o built in 0.288840 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dof_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/global_norms_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o built in 0.325793 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/viscosity_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o built in 0.501879 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/hycoef.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o built in 1.611171 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mass_matrix_mod.mod cmake/atm/CMakeFiles/atm.dir/mass_matrix_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNPhenologyBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o built in 0.466322 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_theta.mod cmake/atm/CMakeFiles/atm.dir/viscosity_theta.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o built in 0.337211 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dof_mod.mod cmake/atm/CMakeFiles/atm.dir/dof_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/global_norms_mod.mod cmake/atm/CMakeFiles/atm.dir/global_norms_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_base.mod cmake/atm/CMakeFiles/atm.dir/viscosity_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hycoef.mod cmake/atm/CMakeFiles/atm.dir/hycoef.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cg_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_si_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o built in 0.302998 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o.provides.build [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/pdelb0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o built in 0.404010 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/plevs0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o built in 0.195483 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o built in 0.220284 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cg_mod.mod cmake/atm/CMakeFiles/atm.dir/cg_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_si_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_si_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o.provides.build [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/solver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o built in 0.202457 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_mod.mod cmake/atm/CMakeFiles/atm.dir/viscosity_mod.mod.stamp GNU [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_advection_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o built in 0.349401 seconds [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/model_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o built in 1.578143 seconds [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_state_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o built in 0.258365 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnphenologybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnphenologybetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solver_mod.mod cmake/atm/CMakeFiles/atm.dir/solver_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o built in 0.555303 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/unit_tests_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_base.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_init_mod.mod cmake/atm/CMakeFiles/atm.dir/model_init_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sl_advection.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o built in 4.046570 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/allocationmod.mod cmake/lnd/CMakeFiles/lnd.dir/allocationmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNAllocationBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o built in 0.806333 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o built in 0.679305 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittDecompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o built in 0.758126 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/unit_tests_mod.mod cmake/atm/CMakeFiles/atm.dir/unit_tests_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o built in 1.405976 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_state_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_state_mod.mod.stamp GNU /usr/bin/cmake -E 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advance_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o built in 1.109965 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_funcsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o built in 2.079525 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesismod.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesismod.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o built in 1.425641 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/readParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o built in 2.412017 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advance_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advance_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_driver_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o built in 0.457990 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o built in 0.729130 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_implicit_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o built in 1.942665 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o built in 1.510900 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_base.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_funcsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_funcsmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o built in 0.188778 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o built in 0.611414 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopyfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/canopyfluxesmod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/controlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o built in 0.199045 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_implicit_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_implicit_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o.provides.build Target 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_data_flux.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o built in 0.719601 seconds [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ref_pres.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o built in 0.682997 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/controlmod.mod cmake/lnd/CMakeFiles/lnd.dir/controlmod.mod.stamp GNU [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ndepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o built in 0.313358 seconds [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_instMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o built in 0.221508 seconds [ 76%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynpftFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o built in 0.365156 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/namelist_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o built in 0.289663 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o.provides.build [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pdepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o built in 0.391535 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/restFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o built in 0.363889 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_util_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_util_mod.mod.stamp 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cmake_copy_f90_mod cmake/atm/ref_pres.mod cmake/atm/CMakeFiles/atm.dir/ref_pres.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ndepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/ndepstreammod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/namelist_mod.mod cmake/atm/CMakeFiles/atm.dir/namelist_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_instmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_instmod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SatellitePhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o built in 0.501077 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o built in 0.572514 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pdepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/pdepstreammod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_test_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o built in 1.207893 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_import_export.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_import_export.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_grid.mod cmake/atm/CMakeFiles/atm.dir/phys_grid.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o built in 0.162549 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o built in 0.274980 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o built in 0.740676 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o.provides.build [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/FireMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o built in 0.220280 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o built in 1.086581 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/satellitephenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/satellitephenologymod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hk_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o built in 0.344106 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridDriverMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o built in 0.481587 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/debug_info.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o built in 0.580951 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o built in 0.220873 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelinterfacemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers_suite.mod cmake/atm/CMakeFiles/atm.dir/tracers_suite.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/restfilemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radae.mod cmake/atm/CMakeFiles/atm.dir/radae.mod.stamp GNU [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o built in 0.891839 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterMovementMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o built in 0.474987 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_test_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_test_mod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/dadadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o built in 0.221020 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg4.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o built in 0.213386 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qqflx_fixer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o built in 0.915695 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/intp_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o built in 2.157099 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelvsfmmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelvsfmmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/firemod.mod cmake/lnd/CMakeFiles/lnd.dir/firemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusdynamicsmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o built in 0.213086 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_buffers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o built in 0.213151 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/interp_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o built in 0.327792 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgriddrivermod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgriddrivermod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/sat_hist.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o built in 0.610384 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwatermovementmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwatermovementmod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/soil_erod_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o built in 0.632378 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o built in 0.238468 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/polar_avg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_synoz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o built in 1.164891 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/init_hydrology.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o built in 0.266434 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o built in 0.272302 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sethet.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_msis_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o built in 0.199370 seconds [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_snoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o built in 2.610271 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNEcosystemDynBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o built in 0.256278 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o built in 0.720037 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/debug_info.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/gravity_waves_sources.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o built in 0.323092 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/module_perturb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o built in 0.202642 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o built in 1.322132 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_buffers.mod cmake/atm/CMakeFiles/atm.dir/cam_history_buffers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_types.mod cmake/atm/CMakeFiles/atm.dir/physics_types.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interp_mod.mod cmake/atm/CMakeFiles/atm.dir/interp_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sat_hist.mod cmake/atm/CMakeFiles/atm.dir/sat_hist.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnecosystemdynbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnecosystemdynbetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/soil_erod_mod.mod cmake/atm/CMakeFiles/atm.dir/soil_erod_mod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/subcol_utils.F90 -o CMakeFiles/atm.dir/subcol_utils.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/polar_avg.mod cmake/atm/CMakeFiles/atm.dir/polar_avg.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o built in 1.131154 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_synoz.mod cmake/atm/CMakeFiles/atm.dir/mo_synoz.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/soilhydrologymod.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI 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CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o built in 0.220481 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_initializeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o built in 0.741172 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologydrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologydrainagemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/majorsp_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o built in 0.202338 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_scream.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o Target CMakeFiles/atm.dir/subcol_utils.F90.o built in 1.423497 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rayleigh_friction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o built in 0.214379 seconds [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cld_sediment.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o built in 0.225486 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gravity_waves_sources.mod cmake/atm/CMakeFiles/atm.dir/gravity_waves_sources.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o built in 1.001599 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologynodrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologynodrainagemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/module_perturb.mod cmake/atm/CMakeFiles/atm.dir/module_perturb.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_utils.mod cmake/atm/CMakeFiles/atm.dir/subcol_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o.provides.build [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_gmean.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_model.mod cmake/atm/CMakeFiles/atm.dir/dust_model.mod.stamp GNU [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_fstrat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o built in 0.323847 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/boundarydata.mod cmake/atm/CMakeFiles/atm.dir/boundarydata.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/majorsp_diffusion.mod cmake/atm/CMakeFiles/atm.dir/majorsp_diffusion.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_sat_scream.mod cmake/atm/CMakeFiles/atm.dir/wv_sat_scream.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rayleigh_friction.mod cmake/atm/CMakeFiles/atm.dir/rayleigh_friction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cld_sediment.mod cmake/atm/CMakeFiles/atm.dir/pkg_cld_sediment.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o built in 0.309685 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_gmean.mod cmake/atm/CMakeFiles/atm.dir/phys_gmean.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o.provides.build [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm/physics_buffer.F90 -o CMakeFiles/atm.dir/physics_buffer.F90.o [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o built in 0.528173 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o.provides.build [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_flbc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o built in 1.644644 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_initializemod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_initializemod.mod.stamp GNU [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o built in 0.438083 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_fstrat.mod cmake/atm/CMakeFiles/atm.dir/mo_fstrat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_flbc.mod cmake/atm/CMakeFiles/atm.dir/mo_flbc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o.provides.build [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/chem_surfvals.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o built in 0.294778 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chem_surfvals.mod cmake/atm/CMakeFiles/atm.dir/chem_surfvals.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o built in 1.307601 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/balancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/balancecheckmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o.provides.build [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_driver.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o Target CMakeFiles/atm.dir/physics_buffer.F90.o built in 2.473942 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_buffer.mod cmake/atm/CMakeFiles/atm.dir/physics_buffer.mod.stamp GNU [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o built in 0.222662 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o built in 2.745222 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/short_lived_species.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o built in 0.256943 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/read_volc_radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o built in 0.522773 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radheat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o built in 0.418124 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o built in 0.256835 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ghg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o built in 0.268354 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iondrag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o built in 2.191769 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_driver.mod cmake/lnd/CMakeFiles/lnd.dir/elm_driver.mod.stamp GNU [ 83%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_esmf.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o built in 2.931664 seconds [ 83%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_mct.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o built in 0.158086 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o built in 0.240898 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ionosphere.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_tstcp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o built in 0.685699 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3.mod cmake/atm/CMakeFiles/atm.dir/micro_p3.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_comp_esmf.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_comp_esmf.mod.stamp GNU [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qbo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o built in 0.227165 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history.mod cmake/atm/CMakeFiles/atm.dir/cam_history.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_data.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o built in 0.212250 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wetdep.mod cmake/atm/CMakeFiles/atm.dir/wetdep.mod.stamp GNU [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_cycle.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rad_constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o built in 0.369586 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_rename.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o built in 0.318173 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/output_aerocom_aie.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o built in 0.324831 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o.provides.build [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/cfc11star.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o built in 0.282114 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share 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-DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_cph.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o built in 0.345712 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_exp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o Target liblnd.a built in 0.137559 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [ 85%] Built target lnd [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aero_settling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o built in 0.356868 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jeuv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o built in 0.232051 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ghg_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o built in 0.244071 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o built in 0.295607 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_neu_wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o built in 0.630626 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o built in 0.483110 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/rate_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o built in 0.426172 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tropopause.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o built in 0.241592 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/read_volc_radiation_data.mod cmake/atm/CMakeFiles/atm.dir/read_volc_radiation_data.mod.stamp GNU [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ebert_curry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o built in 0.476939 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/slingo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o built in 0.338184 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radheat.mod cmake/atm/CMakeFiles/atm.dir/radheat.mod.stamp GNU [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aoa_tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o built in 0.796610 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_aero_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_aero_data.mod.stamp GNU [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_ozone_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o built in 0.914555 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituent_burden.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o built in 0.321572 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tidal_diag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o built in 0.323115 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o built in 0.297990 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o built in 0.239897 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_cover_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/conv_water.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o built in 0.344842 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_update_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o built in 0.251091 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/uwshcu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o built in 0.330148 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ghg_data.mod cmake/atm/CMakeFiles/atm.dir/ghg_data.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o built in 0.390724 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iondrag.mod cmake/atm/CMakeFiles/atm.dir/iondrag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ionosphere.mod cmake/atm/CMakeFiles/atm.dir/ionosphere.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_tstcp.mod cmake/atm/CMakeFiles/atm.dir/subcol_tstcp.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/qbo.mod cmake/atm/CMakeFiles/atm.dir/qbo.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nudging.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/sslt_rebin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o built in 0.275295 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o built in 0.280730 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/eddy_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o built in 0.282848 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_defaults.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o built in 0.232216 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_scam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o built in 0.265661 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o.provides.build [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/forecast.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o built in 1.154961 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o built in 0.341556 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/co2_cycle.mod cmake/atm/CMakeFiles/atm.dir/co2_cycle.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rad_constituents.mod cmake/atm/CMakeFiles/atm.dir/rad_constituents.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_rename.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_rename.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_wateruptake.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o built in 1.881363 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cfc11star.mod cmake/atm/CMakeFiles/atm.dir/cfc11star.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_apex.mod cmake/atm/CMakeFiles/atm.dir/mo_apex.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/clybry_fam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o built in 0.613040 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airglow.mod cmake/atm/CMakeFiles/atm.dir/mo_airglow.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airplane.mod cmake/atm/CMakeFiles/atm.dir/mo_airplane.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_cph.mod cmake/atm/CMakeFiles/atm.dir/mo_cph.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_exp_sol.mod cmake/atm/CMakeFiles/atm.dir/mo_exp_sol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_aero_settling.mod cmake/atm/CMakeFiles/atm.dir/mo_aero_settling.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jeuv.mod cmake/atm/CMakeFiles/atm.dir/mo_jeuv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_ghg_chem.mod cmake/atm/CMakeFiles/atm.dir/mo_ghg_chem.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_imp_sol.mod cmake/atm/CMakeFiles/atm.dir/mo_imp_sol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_neu_wetdep.mod cmake/atm/CMakeFiles/atm.dir/mo_neu_wetdep.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sad.mod cmake/atm/CMakeFiles/atm.dir/mo_sad.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_solarproton.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o built in 0.987385 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_rates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o built in 0.323882 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rate_diags.mod cmake/atm/CMakeFiles/atm.dir/rate_diags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tropopause.mod cmake/atm/CMakeFiles/atm.dir/tropopause.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/exbdrift.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o built in 0.232797 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ebert_curry.mod cmake/atm/CMakeFiles/atm.dir/ebert_curry.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/slingo.mod cmake/atm/CMakeFiles/atm.dir/slingo.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aoa_tracers.mod cmake/atm/CMakeFiles/atm.dir/aoa_tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_ozone_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_ozone_data.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o built in 0.333590 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constituent_burden.mod cmake/atm/CMakeFiles/atm.dir/constituent_burden.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tidal_diag.mod cmake/atm/CMakeFiles/atm.dir/tidal_diag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_fraction.mod cmake/atm/CMakeFiles/atm.dir/cloud_fraction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_cover_diags.mod cmake/atm/CMakeFiles/atm.dir/cloud_cover_diags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/conv_water.mod cmake/atm/CMakeFiles/atm.dir/conv_water.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_update_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_update_mod.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hetfrz_classnuc_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o built in 0.371422 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop_bam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o built in 0.377523 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o built in 0.732659 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nudging.mod cmake/atm/CMakeFiles/atm.dir/nudging.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sslt_rebin.mod cmake/atm/CMakeFiles/atm.dir/sslt_rebin.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers.mod cmake/atm/CMakeFiles/atm.dir/tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eddy_diff.mod cmake/atm/CMakeFiles/atm.dir/eddy_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_defaults.mod cmake/atm/CMakeFiles/atm.dir/history_defaults.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_scam.mod cmake/atm/CMakeFiles/atm.dir/history_scam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o built in 0.415205 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sox_cldaero_mod.mod cmake/atm/CMakeFiles/atm.dir/sox_cldaero_mod.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/tracer_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/camsrfexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o built in 1.209608 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o built in 0.520026 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o built in 0.857514 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_calcsize.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_calcsize.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o built in 0.413651 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_wateruptake.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_wateruptake.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o.provides.build [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aurora.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o built in 1.380816 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clybry_fam.mod cmake/atm/CMakeFiles/atm.dir/clybry_fam.mod.stamp GNU [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chm_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o built in 0.997540 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solarproton.mod cmake/atm/CMakeFiles/atm.dir/mo_solarproton.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_rates.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_rates.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/exbdrift.mod cmake/atm/CMakeFiles/atm.dir/exbdrift.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o built in 0.733820 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/modal_aer_opt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/oldcloud.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o built in 0.848149 seconds [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldfrc2m.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o built in 0.339658 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zm_conv.mod cmake/atm/CMakeFiles/atm.dir/zm_conv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hetfrz_classnuc_cam.mod cmake/atm/CMakeFiles/atm.dir/hetfrz_classnuc_cam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop_bam.mod cmake/atm/CMakeFiles/atm.dir/ndrop_bam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice_cam.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o.provides.build [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/mo_setsox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o built in 0.308367 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/camsrfexch.mod cmake/atm/CMakeFiles/atm.dir/camsrfexch.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_data.mod cmake/atm/CMakeFiles/atm.dir/tracer_data.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_drydep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o built in 0.732327 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_gasaerexch.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_gasaerexch.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_newnuc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_newnuc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop.mod cmake/atm/CMakeFiles/atm.dir/ndrop.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/seasalt_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o built in 0.591654 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o.provides.build [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/linoz_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o built in 7.333462 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_cnst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o built in 0.599341 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_aurora.mod cmake/atm/CMakeFiles/atm.dir/mo_aurora.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_extfrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o built in 0.359735 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chm_diags.mod cmake/atm/CMakeFiles/atm.dir/mo_chm_diags.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lightning.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o built in 0.445804 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_srcs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o built in 0.410945 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o built in 0.366631 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sulf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o built in 0.389640 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_srf_emissions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o built in 1.596975 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o built in 0.290158 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tgcm_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aircraft_emit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o built in 0.394798 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o built in 0.383806 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ghg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o built in 0.307491 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ozone.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o built in 0.528313 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_volcaero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o built in 0.410401 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aer_opt.mod cmake/atm/CMakeFiles/atm.dir/modal_aer_opt.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/oldcloud.mod cmake/atm/CMakeFiles/atm.dir/oldcloud.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cospsimulator_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o built in 0.395514 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o built in 0.707433 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rrtmg_state.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o built in 0.249049 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/check_energy.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o built in 0.426502 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldfrc2m.mod cmake/atm/CMakeFiles/atm.dir/cldfrc2m.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o Target 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-DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat2m_macro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o built in 0.387845 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/uwshcu.mod cmake/atm/CMakeFiles/atm.dir/uwshcu.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o built in 0.266683 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_drag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o built in 0.735771 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o built in 0.557736 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_import_export.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o built in 0.343755 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iop_surf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o built in 0.585852 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setsox.mod cmake/atm/CMakeFiles/atm.dir/mo_setsox.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o built in 0.966286 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o built in 0.217040 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_convproc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o built in 0.251217 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/seasalt_model.mod cmake/atm/CMakeFiles/atm.dir/seasalt_model.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/linoz_data.mod cmake/atm/CMakeFiles/atm.dir/linoz_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_cnst.mod cmake/atm/CMakeFiles/atm.dir/tracer_cnst.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_extfrc.mod cmake/atm/CMakeFiles/atm.dir/mo_extfrc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lightning.mod cmake/atm/CMakeFiles/atm.dir/mo_lightning.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setaer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o built in 0.397007 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_srcs.mod cmake/atm/CMakeFiles/atm.dir/tracer_srcs.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_sad.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_sad.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sulf.mod cmake/atm/CMakeFiles/atm.dir/mo_sulf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_srf_emissions.mod cmake/atm/CMakeFiles/atm.dir/mo_srf_emissions.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tgcm_ubc.mod cmake/atm/CMakeFiles/atm.dir/mo_tgcm_ubc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aircraft_emit.mod cmake/atm/CMakeFiles/atm.dir/aircraft_emit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_aero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_aero.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ghg.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ghg.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ozone.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ozone.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_volcaero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_volcaero.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_shallow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o built in 2.619214 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_drag.mod cmake/atm/CMakeFiles/atm.dir/gw_drag.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/flux_avg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_aero.mod cmake/atm/CMakeFiles/atm.dir/microp_aero.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dp_coupling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o built in 1.440598 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_import_export.mod cmake/atm/CMakeFiles/atm.dir/atm_import_export.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tphysidl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o built in 0.292420 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_deposition.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_deposition.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_coag.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_coag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_convproc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_convproc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chlorine_loading_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o built in 0.267307 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o built in 0.548163 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setinv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setaer.mod cmake/atm/CMakeFiles/atm.dir/mo_setaer.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setext.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o built in 0.716417 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o built in 0.290062 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/upper_bc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aer_rad_props.mod cmake/atm/CMakeFiles/atm.dir/aer_rad_props.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_rad_props.mod cmake/atm/CMakeFiles/atm.dir/cloud_rad_props.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radlw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o built in 0.285910 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radsw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o built in 0.322937 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hb_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o built in 0.278012 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldwat2m_macro.mod cmake/atm/CMakeFiles/atm.dir/cldwat2m_macro.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_shallow.mod cmake/atm/CMakeFiles/atm.dir/convect_shallow.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_deep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o built in 0.444668 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/flux_avg.mod cmake/atm/CMakeFiles/atm.dir/flux_avg.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o built in 0.298513 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dp_coupling.mod cmake/atm/CMakeFiles/atm.dir/dp_coupling.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/stratiform.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aerodep_flx.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o built in 0.352979 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o built in 0.385840 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chlorine_loading_data.mod cmake/atm/CMakeFiles/atm.dir/chlorine_loading_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setinv.mod cmake/atm/CMakeFiles/atm.dir/mo_setinv.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photoin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o built in 0.998615 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setext.mod cmake/atm/CMakeFiles/atm.dir/mo_setext.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/upper_bc.mod cmake/atm/CMakeFiles/atm.dir/upper_bc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radlw.mod cmake/atm/CMakeFiles/atm.dir/radlw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radsw.mod cmake/atm/CMakeFiles/atm.dir/radsw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hb_diff.mod cmake/atm/CMakeFiles/atm.dir/hb_diff.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/macrop_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o built in 0.762854 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_deep.mod cmake/atm/CMakeFiles/atm.dir/convect_deep.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stratiform.mod cmake/atm/CMakeFiles/atm.dir/stratiform.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/molec_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o built in 0.346960 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/stepon.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o built in 0.439588 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aerodep_flx.mod cmake/atm/CMakeFiles/atm.dir/aerodep_flx.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/lin_strat_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o built in 1.256634 seconds Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o built in 0.457185 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photoin.mod cmake/atm/CMakeFiles/atm.dir/mo_photoin.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radiation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o built in 0.867162 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/molec_diff.mod cmake/atm/CMakeFiles/atm.dir/molec_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stepon.mod cmake/atm/CMakeFiles/atm.dir/stepon.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_amicphys.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_amicphys.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o built in 0.223987 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/macrop_driver.mod cmake/atm/CMakeFiles/atm.dir/macrop_driver.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vertical_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o built in 0.372568 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o built in 0.877861 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o built in 0.536930 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lin_strat_chem.mod cmake/atm/CMakeFiles/atm.dir/lin_strat_chem.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/llnl_o1d_to_2oh_adj.mod cmake/atm/CMakeFiles/atm.dir/llnl_o1d_to_2oh_adj.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radiation.mod cmake/atm/CMakeFiles/atm.dir/radiation.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_initialize_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_initialize_data.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o built in 0.801810 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/aero_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o built in 0.964363 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photo.mod cmake/atm/CMakeFiles/atm.dir/mo_photo.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertical_diffusion.mod cmake/atm/CMakeFiles/atm.dir/vertical_diffusion.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o.provides.build /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:87:67: type(clubb_config_flags_type), public, save :: clubb_config_flags 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:88:60: real(r8), dimension(nparams), public, save :: clubb_params ! Adjustable CLUBB parameters (C1, C2 ...) 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:49:60: stats_rad_zm(:), & ! stats_rad_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:48:60: stats_rad_zt(:), & ! stats_rad_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:50:57: stats_sfc(:) ! stats_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:47:56: stats_zm(:), & ! stats_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:46:56: type (stats), allocatable, target, save :: stats_zt(:), & ! stats_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o built in 0.418932 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cloud_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o built in 1.694252 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aero_model.mod cmake/atm/CMakeFiles/atm.dir/aero_model.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_usrrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o built in 1.147639 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_usrrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_usrrxt.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o built in 1.048545 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_gas_phase_chemdr.mod cmake/atm/CMakeFiles/atm.dir/mo_gas_phase_chemdr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waccm_hrates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o built in 0.530478 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waccm_hrates.mod cmake/atm/CMakeFiles/atm.dir/mo_waccm_hrates.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chemini.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o built in 5.140553 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_intr.mod cmake/atm/CMakeFiles/atm.dir/clubb_intr.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o built in 0.471432 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chemini.mod cmake/atm/CMakeFiles/atm.dir/mo_chemini.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chemistry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:63:45: stats_lh_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:62:44: type (stats), target, save :: stats_lh_zt, & 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1680:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1693:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o built in 0.987828 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chemistry.mod cmake/atm/CMakeFiles/atm.dir/chemistry.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o built in 1.675153 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_silhs.mod cmake/atm/CMakeFiles/atm.dir/subcol_silhs.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o built in 0.583245 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol.mod cmake/atm/CMakeFiles/atm.dir/subcol.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/restart_physics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_interface.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o built in 1.390856 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cam_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o built in 0.750779 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_physics.mod cmake/atm/CMakeFiles/atm.dir/restart_physics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o built in 2.620101 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_interface.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_interface.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o built in 6.237176 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_cam.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o built in 0.519848 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_driver.mod cmake/atm/CMakeFiles/atm.dir/microp_driver.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physpkg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/inidat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o built in 0.551150 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/inidat.mod cmake/atm/CMakeFiles/atm.dir/inidat.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS 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CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o built in 0.612354 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_dynamics.mod cmake/atm/CMakeFiles/atm.dir/restart_dynamics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o.provides.build [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_restart.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o Target 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/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o built in 0.149018 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/t_drv_timers_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/t_drv_timers_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o built in 0.166157 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_type_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o.provides.build [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o built in 0.432740 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/mrg_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/mrg_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o built in 0.242291 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_type_mod.mod.stamp GNU [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o built in 0.314748 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_mod.mod.stamp GNU [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o built in 0.174214 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o built in 0.673648 seconds f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o built in 0.706777 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o built in 0.216146 seconds f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o built in 0.151842 seconds [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o built in 0.337973 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_flux_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_flux_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_io_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_io_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o built in 1.137699 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_glc2lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_glc2lnd_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2glc_mod.mod.stamp GNU f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ice_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ice_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2rof_irrig_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2rof_irrig_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_diag_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_diag_mct.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o built in 0.228559 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o built in 0.538821 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_wav_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_wav_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_atm_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_atm_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o built in 0.239106 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_lnd_mod.mod.stamp GNU f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o built in 0.293655 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o built in 0.153075 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/cplcomp_exchange_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/cplcomp_exchange_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_iac_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_iac_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o built in 0.437084 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_glc_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o built in 0.415545 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_rof_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_rof_mod.mod.stamp GNU f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o built in 0.825325 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ocn_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ocn_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o built in 0.213573 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_aoflux_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_aoflux_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o built in 0.358851 seconds Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o built in 0.367749 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_domain_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_domain_mct.mod.stamp GNU f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_frac_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_frac_mct.mod.stamp GNU f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o built in 0.423934 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o built in 0.802325 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_hist_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_hist_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o built in 1.558057 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/cime_comp_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/cime_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o built in 0.290274 seconds [100%] Linking Fortran executable /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/cmake/cpl && /usr/bin/cmake -E cmake_link_script CMakeFiles/e3sm.exe.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -Wl,-rpath,/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -Wl,-rpath,/usr/local/NETCDF-C-4.8.0-gfortran/lib CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o 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../glc/libglc.a ../wav/libwav.a ../iac/libiac.a ../esp/libesp.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/lib/libcsm_share.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libmct.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libmpeu.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libpiof.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libpioc.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libgptl.a -L/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -lnetcdff -lnetcdf -L/usr/local/NETCDF-C-4.8.0-gfortran/lib -lnetcdf -L/usr/local/lapack-3.8.0 -llapack -lblas /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so -lmpicxx -lrt -lpthread -ldl -lstdc++ Target /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe built in 1.272900 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' [100%] Built target e3sm.exe make[1]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld' /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/cmake-bld/CMakeFiles 0 real 178.88 user 533.97 sys 121.78 [Pipeline] sh + gzip -d 'projects/scratch/SCM_runs/test_DYCOMSrf01/run/atm.log.*.gz' gzip: projects/scratch/SCM_runs/test_DYCOMSrf01/run/atm.log.*.gz: No such file or directory [Pipeline] echo Not all logs were made for DYCOMSrf01. [Pipeline] sh + gzip -d projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.230629-182740.gz + cat projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.230629-182740 Configuring with cmake cmd: /usr/bin/time -p cmake -DCIME_MODEL=e3sm -Dcompile_threaded=FALSE -DINSTALL_SHAREDPATH=/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct -DUSE_KOKKOS=TRUE -DCOMP_NAMES='cpl;eam;elm;cice;docn;srof;sglc;swav;siac;sesp' -DCASEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts" -DCASETOOLS="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools" -DCIMEROOT="/home/jenkins/workspace/branch_e3sm_test/cime" -DCOMP_INTERFACE="mct" -DCOMPILER="gnu" -DDEBUG="FALSE" -DEXEROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build" -DINCROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lib/include" -DLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lib" -DMACH="nelson" -DMPILIB="mpich" -DNINST_VALUE="c1a1l1i1o1r1g1w1i1e1" -DOS="Linux" -DPIO_VERSION="2" -DSHAREDLIBROOT="/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build" -DSMP_PRESENT="FALSE" -DUSE_ESMF_LIB="FALSE" -DUSE_MOAB="FALSE" -DCAM_CONFIG_OPTS="-phys default -scam -nlev 72 -clubb_sgs -nadv 29 -rad rrtmg -chem trop_mam3 -silent -nlev 72 -microphys mg2 -psubcols 4 -cppdefs '-DUWM_MISC -DSILHS'" -DCOMP_LND="elm" -DCOMPARE_TO_NUOPC="FALSE" -DUSE_TRILINOS="FALSE" -DUSE_ALBANY="FALSE" -DUSE_PETSC="FALSE" -DCMAKE_C_COMPILER_WORKS=1 -DCMAKE_CXX_COMPILER_WORKS=1 -DCMAKE_Fortran_COMPILER_WORKS=1 /home/jenkins/workspace/branch_e3sm_test/components -- The C compiler identification is GNU 8.4.0 -- The CXX compiler identification is GNU 10.3.0 -- The Fortran compiler identification is GNU 8.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 - skipped -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 -- Checking whether /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 supports Fortran 90 - yes Found component atm model 'eam' -- Enabled Kokkos devices: SERIAL CMake Warning at /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfigCommon.cmake:29 (MESSAGE): The installed Kokkos configuration does not support CXX extensions. Forcing -DCMAKE_CXX_EXTENSIONS=Off Call Stack (most recent call first): /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/cmake/Kokkos/KokkosConfig.cmake:43 (INCLUDE) cmake/common_setup.cmake:251 (find_package) cmake/build_model.cmake:5 (include) cmake/atm/CMakeLists.txt:1 (build_model) Warning: Skipping repeated base filename rrtmg_lw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rad.f90 Warning: Skipping repeated base filename rrtmg_sw_rad.f90 for eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_rad.f90 Warning: Skipping repeated base filename vrtmap.F90 for eam/src/utils/vrtmap.F90 Found component lnd model 'elm' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename accumulMod.F90 for elm/src/utils/accumulMod.F90 Found component ice model 'cice' -- Enabled Kokkos devices: SERIAL Warning: Skipping repeated base filename ice_communicate.F90 for cice/src/mpi/ice_communicate.F90 Found component ocn model 'docn' -- Enabled Kokkos devices: SERIAL Found component rof model 'srof' -- Enabled Kokkos devices: SERIAL Found component glc model 'sglc' -- Enabled Kokkos devices: SERIAL Found component wav model 'swav' -- Enabled Kokkos devices: SERIAL Found component iac model 'siac' -- Enabled Kokkos devices: SERIAL Found component esp model 'sesp' -- Enabled Kokkos devices: SERIAL -- Enabled Kokkos devices: SERIAL -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CASETOOLS SHAREDLIBROOT SMP_PRESENT USE_MOAB -- Build files have been written to: /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld real 2.01 user 1.17 sys 0.84 Building with cmd: /usr/bin/time -p make -j 4 /usr/bin/cmake -S/home/jenkins/workspace/branch_e3sm_test/components -B/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/CMakeFiles /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/CMakeFiles/genf90.dir/DependInfo.cmake --color= Scanning dependencies of target genf90 make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f CMakeFiles/genf90.dir/build.make CMakeFiles/genf90.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make[2]: Nothing to be done for 'CMakeFiles/genf90.dir/build'. make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 0%] Built target genf90 make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/depend make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/depend make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/depend make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice/CMakeFiles/ice.dir/DependInfo.cmake --color= make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn/CMakeFiles/ocn.dir/DependInfo.cmake --color= [ 1%] Generating restUtilMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/restUtilMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/restUtilMod.F90 make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 1%] Generating buffer.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/buffer.F90 Scanning dependencies of target ocn make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/ocn/CMakeFiles/ocn.dir/build.make cmake/ocn/CMakeFiles/ocn.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 1%] Generating ncdio_pio.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ncdio_pio.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/ncdio_pio.F90 [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o [ 1%] Generating physics_buffer.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_buffer.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/physics_buffer.F90 Scanning dependencies of target ice make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/ice/CMakeFiles/ice.dir/build.make cmake/ice/CMakeFiles/ice.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 1%] Generating dynVarMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarMod.F90 [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_kinds_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o [ 1%] Generating subcol_utils.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_utils.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/subcol_utils.F90 [ 1%] Generating dynVarTimeInterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeInterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/CMakeFiles/atm.dir/DependInfo.cmake --color= [ 1%] Generating dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /home/jenkins/workspace/branch_e3sm_test/cime/src/externals/genf90/genf90.pl /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynVarTimeUninterpMod.F90.in > /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/CMakeFiles/lnd.dir/DependInfo.cmake --color= Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o built in 0.092991 seconds Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o built in 0.134267 seconds [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_cpl_indices.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_shr_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_shr_mod.mod.stamp GNU [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o Scanning dependencies of target lnd make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/lnd/CMakeFiles/lnd.dir/build.make cmake/lnd/CMakeFiles/lnd.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 1%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o built in 0.136036 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_kinds_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_kinds_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_cpl_indices.mod cmake/ice/CMakeFiles/ice.dir/ice_cpl_indices.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_kinds_mod.F90.o.provides.build [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_communicate.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o Scanning dependencies of target atm make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/atm/CMakeFiles/atm.dir/build.make cmake/atm/CMakeFiles/atm.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 1%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o built in 0.115459 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o built in 0.172075 seconds [ 1%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_constants.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o [ 1%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o built in 0.400831 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/docn_comp_mod.mod cmake/ocn/CMakeFiles/ocn.dir/docn_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o built in 0.100299 seconds [ 1%] Building Fortran object cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ocn/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.docn -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90 -o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain_size.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_abortutils.F90.o built in 0.199683 seconds /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdMod.F90:25:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_logfile.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o built in 0.166011 seconds [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/landunit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o built in 0.093773 seconds [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_fileunits.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o Target CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o built in 0.192573 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ocn/ocn_comp_mct.mod cmake/ocn/CMakeFiles/ocn.dir/ocn_comp_mct.mod.stamp GNU [ 2%] Linking CXX static library libocn.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn && /usr/bin/cmake -P CMakeFiles/ocn.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn && /usr/bin/cmake -E cmake_link_script CMakeFiles/ocn.dir/link.txt --verbose=1 Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o built in 0.191071 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o built in 0.168593 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libocn.a CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_comp_mod.F90.o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/docn_shr_mod.F90.o CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o built in 0.113939 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffixed-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/mpishorthand.F -o CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesConstantsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesConstantsMod.F90.o Target libocn.a built in 0.003545 seconds [ 2%] 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-I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_scam.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libocn.a Target libocn.a built in 0.003454 seconds /usr/bin/cmake -E touch cmake/ocn/CMakeFiles/ocn.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/data_comps_mct/docn/src/ocn_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 2%] Built target ocn /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_cpl_indices.F90.o.provides.build make -f cmake/rof/CMakeFiles/rof.dir/build.make cmake/rof/CMakeFiles/rof.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/rof /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o [ 2%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_broadcast.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o built in 0.195458 seconds [ 2%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/namelist_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o Target CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o built in 0.124768 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/rof/rof_comp_mct.mod cmake/rof/CMakeFiles/rof.dir/rof_comp_mct.mod.stamp GNU [ 2%] Linking CXX static library librof.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof && /usr/bin/cmake -P CMakeFiles/rof.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof && /usr/bin/cmake -E cmake_link_script CMakeFiles/rof.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc librof.a CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o Target librof.a built in 0.002856 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib librof.a Target librof.a built in 0.002869 seconds /usr/bin/cmake -E touch cmake/rof/CMakeFiles/rof.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/srof/src/rof_comp_mct.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o built in 0.153106 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 2%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o [ 2%] Built target rof [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/namelist_utils.F90.o built in 0.191912 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ppgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o built in 0.259168 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_scam.mod cmake/ice/CMakeFiles/ice.dir/ice_scam.mod.stamp GNU [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_atmo.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o built in 0.155677 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_communicate.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o built in 0.157111 seconds make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc/CMakeFiles/glc.dir/DependInfo.cmake --color= [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SpeciesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o Scanning dependencies of target glc make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/glc/CMakeFiles/glc.dir/build.make cmake/glc/CMakeFiles/glc.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 3%] Building Fortran object cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/glc/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90 -o CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o built in 0.194028 seconds [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/infnan.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o built in 0.174092 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_scam.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain_size.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_fileunits.F90.o.provides.build Target CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o built in 0.114866 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/glc/glc_comp_mct.mod cmake/glc/CMakeFiles/glc.dir/glc_comp_mct.mod.stamp GNU [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_exit.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o built in 0.157841 seconds [ 3%] Linking CXX static library libglc.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc && /usr/bin/cmake -P CMakeFiles/glc.dir/cmake_clean_target.cmake [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varsur.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc && /usr/bin/cmake -E cmake_link_script CMakeFiles/glc.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libglc.a CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o Target libglc.a built in 0.003190 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libglc.a Target libglc.a built in 0.003193 seconds /usr/bin/cmake -E touch cmake/glc/CMakeFiles/glc.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 3%] Built target glc Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o built in 0.108195 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_broadcast.mod cmake/ice/CMakeFiles/ice.dir/ice_broadcast.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o built in 0.191318 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_atmo.mod cmake/ice/CMakeFiles/ice.dir/ice_atmo.mod.stamp GNU [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_instance.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_broadcast.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_atmo.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_exit.mod cmake/ice/CMakeFiles/ice.dir/ice_exit.mod.stamp GNU [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_calendar.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o built in 0.154457 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_blocks.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveMod.F90.o built in 0.156558 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_nlUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o built in 0.150857 seconds make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/depend Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o built in 0.207013 seconds make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav/CMakeFiles/wav.dir/DependInfo.cmake --color= Scanning dependencies of target wav make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/wav/CMakeFiles/wav.dir/build.make cmake/wav/CMakeFiles/wav.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 3%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dycore.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o [ 3%] Building Fortran object cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/wav/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90 -o CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o built in 0.220564 seconds [ 3%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_spacecurve.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o built in 0.169503 seconds [ 3%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNBeTRIndicatorMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o Target CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o built in 0.114519 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/wav/wav_comp_mct.mod cmake/wav/CMakeFiles/wav.dir/wav_comp_mct.mod.stamp GNU [ 4%] Linking CXX static library libwav.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav && /usr/bin/cmake -P CMakeFiles/wav.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav && /usr/bin/cmake -E cmake_link_script CMakeFiles/wav.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libwav.a CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o built in 0.199961 seconds Target libwav.a built in 0.002905 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libwav.a [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/thread_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o Target libwav.a built in 0.002896 seconds /usr/bin/cmake -E touch cmake/wav/CMakeFiles/wav.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/swav/src/wav_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 4%] Built target wav [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/string_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o built in 0.160435 seconds [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o built in 0.350736 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_exit.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o built in 0.200772 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_calendar.mod cmake/ice/CMakeFiles/ice.dir/ice_calendar.mod.stamp GNU [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_blocks.mod cmake/ice/CMakeFiles/ice.dir/ice_blocks.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_spacecurve.mod cmake/ice/CMakeFiles/ice.dir/ice_spacecurve.mod.stamp GNU [ 4%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_work.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o built in 0.159827 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_blocks.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o built in 0.217204 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/params_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/ll_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o built in 0.106212 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_calendar.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_spacecurve.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o built in 0.161250 seconds [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o [ 4%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_probability_tools.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o built in 0.193273 seconds make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac/CMakeFiles/iac.dir/DependInfo.cmake --color= Target CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o built in 0.213654 seconds Scanning dependencies of target iac make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/iac/CMakeFiles/iac.dir/build.make cmake/iac/CMakeFiles/iac.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/domain_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o [ 4%] Building Fortran object cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/iac/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.siac -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90 -o CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o built in 0.119105 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_work.mod cmake/ice/CMakeFiles/ice.dir/ice_work.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability_tools.mod cmake/ice/CMakeFiles/ice.dir/ice_probability_tools.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_work.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o built in 0.162767 seconds [ 4%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_distribution.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o Target CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o built in 0.113494 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/iac/iac_comp_mct.mod cmake/iac/CMakeFiles/iac.dir/iac_comp_mct.mod.stamp GNU [ 4%] Linking CXX static library libiac.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac && /usr/bin/cmake -P CMakeFiles/iac.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac && /usr/bin/cmake -E cmake_link_script CMakeFiles/iac.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libiac.a CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o Target libiac.a built in 0.002944 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o built in 0.200429 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libiac.a [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sort_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o Target libiac.a built in 0.002961 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRHistVarType.F90.o built in 0.167543 seconds /usr/bin/cmake -E touch cmake/iac/CMakeFiles/iac.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/siac/src/iac_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/SimpleMathMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o [ 4%] Built target iac [ 4%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o built in 0.200132 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o built in 0.165747 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/m_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o built in 0.203861 seconds [ 4%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/pspect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o [ 5%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/topounit_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o built in 0.152138 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o built in 0.194586 seconds [ 6%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/elm_varorb.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/pspect.F90.o built in 0.191211 seconds [ 6%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o [ 6%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/chem_mods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o built in 0.706638 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability_tools.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_distribution.mod cmake/ice/CMakeFiles/ice.dir/ice_distribution.mod.stamp GNU [ 6%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o built in 0.156698 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/ExternalModelConstants.F90.o built in 0.157933 seconds [ 6%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/sslt_sections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o [ 6%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_global_reductions.F90:32:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o built in 0.193412 seconds [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o built in 0.154764 seconds [ 7%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/cam_cpl_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o built in 0.158125 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/sslt_sections.F90.o built in 0.224610 seconds [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o built in 0.375497 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_distribution.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_global_reductions.mod cmake/ice/CMakeFiles/ice.dir/ice_global_reductions.mod.stamp GNU [ 7%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o built in 0.150256 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_global_reductions.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o built in 0.151524 seconds [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o [ 7%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o built in 0.239784 seconds /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_boundary.F90:61:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement [ 7%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/srf_field_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o built in 0.193622 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o built in 0.193627 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/srf_field_check.F90.o built in 0.246217 seconds [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o built in 0.153863 seconds [ 8%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o built in 0.222446 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o built in 0.152374 seconds make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/depend make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp/CMakeFiles/esp.dir/DependInfo.cmake --color= [ 8%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o Scanning dependencies of target esp make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/esp/CMakeFiles/esp.dir/build.make cmake/esp/CMakeFiles/esp.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 9%] Building Fortran object cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/esp/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90 -o CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o built in 0.191243 seconds Target CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o built in 0.101316 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/esp/esp_comp_mct.mod cmake/esp/CMakeFiles/esp.dir/esp_comp_mct.mod.stamp GNU [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/error_function.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o built in 0.156078 seconds [ 9%] Linking CXX static library libesp.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp && /usr/bin/cmake -P CMakeFiles/esp.dir/cmake_clean_target.cmake cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp && /usr/bin/cmake -E cmake_link_script CMakeFiles/esp.dir/link.txt --verbose=1 [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ar qc libesp.a CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o Target libesp.a built in 0.002909 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib libesp.a Target libesp.a built in 0.002838 seconds /usr/bin/cmake -E touch cmake/esp/CMakeFiles/esp.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90.o.provides.build make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 9%] Built target esp [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o built in 0.153146 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_methods.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/error_function.F90.o built in 0.225639 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o built in 0.153211 seconds [ 9%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o built in 0.154325 seconds [ 9%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_methods.F90.o built in 0.235147 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o built in 0.200030 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterStateType_Constants.F90.o built in 0.155467 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_trislv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o built in 0.206259 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o built in 0.164140 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_zadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o built in 0.214960 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o built in 0.159990 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/m_sad_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o built in 1.755351 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o built in 0.192046 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_boundary.mod cmake/ice/CMakeFiles/ice.dir/ice_boundary.mod.stamp GNU [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o [ 10%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_domain.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o built in 0.167307 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_boundary.F90.o.provides.build [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jpl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o built in 0.193401 seconds [ 10%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o built in 0.165312 seconds [ 10%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o built in 0.196134 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_domain.mod cmake/ice/CMakeFiles/ice.dir/ice_domain.mod.stamp GNU [ 11%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_gather_scatter.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/ptm/ExternalModelPTMMod.F90.o built in 0.157372 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o built in 0.209446 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o [ 11%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_state.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o built in 0.219367 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/sv_decomp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o built in 0.128175 seconds [ 11%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/EOSWaterMod.F90.o built in 0.151433 seconds [ 11%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/MultiPhysicsProbConstants.F90.o built in 0.157626 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_rxt_id.F90.o built in 0.193927 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o built in 0.310767 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cmparray_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o built in 0.570793 seconds [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_pio.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o built in 0.159586 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_domain.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBaseType.F90.o built in 0.155412 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbtpar.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_pio.F90.o built in 0.182026 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_gather_scatter.mod cmake/ice/CMakeFiles/ice.dir/ice_gather_scatter.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_state.mod cmake/ice/CMakeFiles/ice.dir/ice_state.mod.stamp GNU [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi/ice_timers.F90 -o CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o built in 0.281235 seconds [ 12%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMType.F90.o built in 0.149877 seconds [ 12%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o built in 0.188860 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_timers.F90.o built in 0.121494 seconds [ 12%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/UnstructuredGridType.F90.o built in 0.156860 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o built in 0.190927 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o built in 0.186815 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConditionType.F90.o built in 0.160110 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_pio.mod cmake/ice/CMakeFiles/ice.dir/ice_pio.mod.stamp GNU Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o built in 0.426128 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/mpi/ice_gather_scatter.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_state.F90.o.provides.build [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/ConnectionSetType.F90.o built in 0.156007 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_read_write.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_flux.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/CouplingVariableType.F90.o built in 0.152598 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o built in 0.233990 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o built in 0.238094 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/GoverningEquationBaseType.F90.o built in 0.154783 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_timers.mod cmake/ice/CMakeFiles/ice.dir/ice_timers.mod.stamp GNU [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MultiPhysicsProbBaseType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o built in 0.190357 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_itd.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_read_write.mod cmake/ice/CMakeFiles/ice.dir/ice_read_write.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_flux.mod cmake/ice/CMakeFiles/ice.dir/ice_flux.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/MeshType.F90.o built in 0.161010 seconds [ 13%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_mechred.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o Target 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o built in 0.189792 seconds [ 13%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SolverType.F90.o built in 0.156648 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o built in 0.234315 seconds [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o [ 13%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o built in 0.191961 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/dtypes/SystemOfEquationsBasePointerType.F90.o built in 0.151784 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSSWType.F90.o built in 0.151990 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o built in 0.429563 seconds [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o [ 14%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o [ 14%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_itd.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o built in 0.190390 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_flux.F90.o.provides.build [ 14%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSnowType.F90.o built in 0.152212 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o built in 0.191437 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o built in 0.280805 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_read_write.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_probability.mod cmake/ice/CMakeFiles/ice.dir/ice_probability.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_mechred.mod cmake/ice/CMakeFiles/ice.dir/ice_mechred.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_itd.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_itd.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o built in 0.194274 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_mechred.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_probability.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/GoveqnThermalKSPTemperatureSoilType.F90.o built in 0.156300 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_itd.F90.o.provides.build [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_grid.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o built in 0.193705 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/MultiPhysicsProbThermal.F90.o built in 0.155246 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o built in 0.194346 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxMod.F90.o built in 0.155726 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o built in 0.191304 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalAuxType.F90.o built in 0.157591 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/SystemOfEquationsThermalType.F90.o built in 0.158307 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o built in 0.615023 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o built in 0.191520 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o built in 0.190287 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureBaseAuxType.F90.o built in 0.155365 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_grid.mod cmake/ice/CMakeFiles/ice.dir/ice_grid.mod.stamp GNU [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_dyn_evp.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxMod.F90.o built in 0.153859 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o built in 0.188160 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o built in 0.189976 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSSWAuxType.F90.o built in 0.153907 seconds [ 15%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxMod.F90.o built in 0.156622 seconds [ 15%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o built in 0.192808 seconds [ 15%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_ocean.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o built in 0.192354 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSnowAuxType.F90.o built in 0.154679 seconds [ 16%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o [ 16%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o built in 0.142344 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o built in 0.614239 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o [ 17%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_remap.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxMod.F90.o built in 0.152411 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_grid.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/thermal/ThermalKSPTemperatureSoilAuxType.F90.o built in 0.152298 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_dyn_evp.mod cmake/ice/CMakeFiles/ice.dir/ice_dyn_evp.mod.stamp GNU [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o built in 0.188605 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/ArrayDimThree.F90.o built in 0.152948 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_mesh_utils.F90.o built in 0.152047 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o built in 0.187967 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_shr_log_mod.F90.o built in 0.156110 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o built in 0.192237 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/GoveqnRichardsODEPressureType.F90.o built in 0.153310 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o built in 0.190315 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/PorosityFunctionMod.F90.o built in 0.157521 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o built in 0.194032 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsMod.F90.o built in 0.157377 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_ocean.mod cmake/ice/CMakeFiles/ice.dir/ice_ocean.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxMod.F90.o built in 0.156307 seconds [ 17%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o built in 0.192189 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o built in 1.072056 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_dyn_evp.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_ocean.F90.o.provides.build [ 17%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_restart.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureAuxType.F90.o built in 0.156362 seconds [ 17%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_prescribed_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/RichardsODEPressureConnAuxType.F90.o built in 0.158432 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o built in 0.190597 seconds [ 17%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SaturationFunction.F90.o built in 0.155504 seconds [ 18%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/SystemOfEquationsVSFMAuxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o built in 0.188272 seconds [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o built in 0.331822 seconds [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o Target 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/fileutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o built in 0.186445 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesconstantsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesconstantsmod.mod.stamp GNU [ 18%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o built in 0.619220 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_transport_remap.mod cmake/ice/CMakeFiles/ice.dir/ice_transport_remap.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_restart.mod cmake/ice/CMakeFiles/ice.dir/ice_restart.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_prescribed_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_prescribed_mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o built in 0.187352 seconds [ 18%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_FY.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o [ 18%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history_fields.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/fileutils.F90.o built in 0.182131 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_constants.mod cmake/lnd/CMakeFiles/lnd.dir/betr_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_ctrl.mod cmake/lnd/CMakeFiles/lnd.dir/betr_ctrl.mod.stamp GNU [ 19%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o built in 0.187812 seconds [ 19%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o built in 0.135245 seconds [ 20%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_precision.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_FY.F90.o built in 0.176122 seconds [ 21%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_lvl.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BetrStatusType.F90.o built in 0.171012 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_kind_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_kind_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/speciesmod.mod cmake/lnd/CMakeFiles/lnd.dir/speciesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varsur.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varsur.mod.stamp GNU [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIntegratorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_vrtqdr.f90.o built in 0.220446 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIODimensionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_precision.F90.o built in 0.191182 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o built in 0.170290 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/error_code.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_meltpond.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIntegratorsMod.F90.o built in 0.216859 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIODimensionsMod.F90.o built in 0.184007 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurvemod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurvemod.mod.stamp GNU [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_transport_driver.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_nlutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_nlutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnbetrindicatormod.mod cmake/lnd/CMakeFiles/lnd.dir/cnbetrindicatormod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o built in 0.197150 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o built in 0.198896 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_decompmod.mod cmake/lnd/CMakeFiles/lnd.dir/betr_decompmod.mod.stamp GNU [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/model_flags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_esmf.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o built in 0.097609 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameter_indices.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_const_mod.F90.o built in 0.158972 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o built in 0.265595 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gbetrtype.mod cmake/lnd/CMakeFiles/lnd.dir/gbetrtype.mod.stamp GNU [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_interfaces.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o built in 0.193458 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_import_export.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_utils.F90.o built in 0.167004 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o built in 0.546043 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o built in 0.228572 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/input_names.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/func_data_type_mod.F90.o built in 0.158971 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mt95.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o built in 0.289592 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_prescribed_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_restart.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_remap.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/SOMStateVarUpdateMod.F90.o built in 0.164339 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_landvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_landvarcontype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrhistvartype.mod cmake/lnd/CMakeFiles/lnd.dir/betrhistvartype.mod.stamp GNU [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_aerosol.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/simplemathmod.mod cmake/lnd/CMakeFiles/lnd.dir/simplemathmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_pftvarcontype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_pftvarcontype.mod.stamp GNU [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o built in 0.191614 seconds [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o built in 0.167448 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pbl_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/BTridiagonalMod.F90.o built in 0.237243 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SpeciesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounit_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/topounit_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varorb.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varorb.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelconstants.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelconstants.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o built in 0.469883 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_chemstatetype_constants.mod cmake/lnd/CMakeFiles/lnd.dir/emi_chemstatetype_constants.mod.stamp GNU [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/elm_cpl_indices.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o built in 0.168257 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/trb_mtn_stress.F90.o built in 0.212679 seconds [ 22%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_therm_vertical.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o [ 22%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_finalizeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o built in 0.206555 seconds [ 22%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vdiff_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o built in 0.202374 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_finalizeMod.F90.o built in 0.162273 seconds [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Atm2LndType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CNCarbonStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_CanopyStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ChemStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_ColumnType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_EnergyFluxType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Filter_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_Landunit_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilHydrologyType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_SoilStateType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_TemperatureType_Constants.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/constants/EMI_WaterFluxType_Constants.F90.o.provides.build /usr/bin/cmake -E touch 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vdiff_lu_solver.F90.o built in 0.278062 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/connectionsettype.mod cmake/lnd/CMakeFiles/lnd.dir/connectionsettype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/couplingvariabletype.mod cmake/lnd/CMakeFiles/lnd.dir/couplingvariabletype.mod.stamp GNU [ 23%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o built in 0.832997 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_fy.mod cmake/ice/CMakeFiles/ice.dir/ice_fy.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history_fields.mod cmake/ice/CMakeFiles/ice.dir/ice_history_fields.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_lvl.mod cmake/ice/CMakeFiles/ice.dir/ice_lvl.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_meltpond.mod 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cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history_fields.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_bounds.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_lvl.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_mesh_utils.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_mesh_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mpp_shr_log_mod.mod cmake/lnd/CMakeFiles/lnd.dir/mpp_shr_log_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_meltpond.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_transport_driver.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ecuyer_random.mod cmake/atm/CMakeFiles/atm.dir/ecuyer_random.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_aerosol.mod cmake/ice/CMakeFiles/ice.dir/ice_aerosol.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_age.mod cmake/ice/CMakeFiles/ice.dir/ice_age.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varctl.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_varpar.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_therm_vertical.mod cmake/ice/CMakeFiles/ice.dir/ice_therm_vertical.mod.stamp GNU [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/goveqnrichardsodepressuretype.mod cmake/lnd/CMakeFiles/lnd.dir/goveqnrichardsodepressuretype.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/code_timer_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/vsfm/MultiPhysicsProbVSFM.F90.o.provides.build [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/output_netcdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/code_timer_module.F90.o built in 0.201313 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_esmf.F90.o.provides.build [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/marsaglia.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o built in 0.160056 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_landvarconType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_pftvarconType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/BeTR_decompMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_constants.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_netcdf.F90.o built in 0.196308 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_import_export.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_ctrl.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_kind_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_aerosol.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/gbetrType.F90.o.provides.build Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o built in 0.358825 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_age.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varctl.F90.o.provides.build [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/quicksort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_therm_vertical.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varsur.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/landunit_varcon.F90.o.provides.build [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_diagnostics.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/topounit_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/SimpleMathMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_nlUtilsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_varorb.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o built in 0.205202 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history_write.mod cmake/ice/CMakeFiles/ice.dir/ice_history_write.mod.stamp GNU [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/getdatetime.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/xpavg_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o built in 0.214775 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varpar.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/getdatetime.F90.o built in 0.162560 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/initcom.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o built in 0.197901 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o built in 0.168149 seconds [ 24%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/trunc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/initcom.F90.o built in 0.194957 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fileutils.mod cmake/lnd/CMakeFiles/lnd.dir/fileutils.mod.stamp GNU [ 24%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o built in 0.266946 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesGlobals.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/trunc.F90.o built in 0.190788 seconds [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_history.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o built in 0.802756 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o built in 0.167034 seconds [ 24%] Building CXX object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -isystem /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -std=c++14 -O -o CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_slmm.cpp.o -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_slmm.cpp [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParametersMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o built in 0.227477 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatustype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatustype.mod.stamp GNU [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp: In static member function ‘static homme::compose::QLT<ES>::Int homme::compose::QLT<ES>::solve(homme::compose::QLT<ES>::Int, const homme::compose::QLT<ES>::VerticalLevelsData&, const Real&)’: /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose/compose_cedr.cpp:5141:3: warning: no return statement in function returning non-void [-Wreturn-type] 5141 | } | ^ Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o built in 0.380483 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o built in 0.946069 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_history_write.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_diagnostics.mod cmake/ice/CMakeFiles/ice.dir/ice_diagnostics.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_history.mod cmake/ice/CMakeFiles/ice.dir/ice_history.mod.stamp GNU [ 24%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_forcing.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o built in 0.162271 seconds [ 24%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o built in 0.159623 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesintegratorsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesintegratorsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesiodimensionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesiodimensionsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNBeTRIndicatorMod.F90.o.provides.build [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxRecvType.F90.o built in 0.186650 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxRecvType.F90.o built in 0.211819 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxRecvType.F90.o built in 0.202471 seconds Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o built in 0.993047 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_orbital.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o built in 0.119233 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_diagnostics.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_history.F90.o.provides.build [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonfluxType.F90.o built in 0.211485 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE.F90.o built in 0.106994 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_forcing.mod cmake/ice/CMakeFiles/ice.dir/ice_forcing.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_orbital.mod cmake/ice/CMakeFiles/ice.dir/ice_orbital.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_forcing.F90.o.provides.build /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_orbital.F90.o.provides.build [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_restoring.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenfluxType.F90.o built in 0.228070 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_restoring.F90.o built in 0.242545 seconds [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. 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/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_shortwave.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_shortwave.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o built in 0.222619 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_const_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_const_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_utils.mod cmake/lnd/CMakeFiles/lnd.dir/betr_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/func_data_type_mod.mod cmake/lnd/CMakeFiles/lnd.dir/func_data_type_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/somstatevarupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/somstatevarupdatemod.mod.stamp GNU [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBaseType.F90.o built in 0.193695 seconds [ 25%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o built in 0.162444 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/btridiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/btridiagonalmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwaterretentioncurveclapphornberg1978mod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwaterretentioncurveclapphornberg1978mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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/opt/intel/oneapi/mpi/2021.6.0/bin/mpicxx -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/column_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o built in 0.167223 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_infnan_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_infnan_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_log_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_log_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracer_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/tracer_varcon.mod.stamp GNU Target 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o [ 25%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE_RunMod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o built in 0.181064 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonfluxrecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonfluxrecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_test.cpp.o built in 0.800446 seconds [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/source/ice_step_mod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o built in 0.204710 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o built in 0.224594 seconds Target CMakeFiles/atm.dir/__/__/homme/src/share/compose/compose_cedr.cpp.o built in 5.105728 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/datetime.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/datetime.F90.o built in 0.193099 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_abortutils.mod cmake/atm/CMakeFiles/atm.dir/cam_abortutils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_logfile.mod cmake/atm/CMakeFiles/atm.dir/cam_logfile.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o built in 0.213805 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mpishorthand.mod cmake/atm/CMakeFiles/atm.dir/mpishorthand.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/namelist_utils.mod cmake/atm/CMakeFiles/atm.dir/namelist_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ppgrid.mod cmake/atm/CMakeFiles/atm.dir/ppgrid.mod.stamp GNU [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/units.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o built in 1.118781 seconds [ 26%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/drydep_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o built in 0.154868 seconds [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o built in 0.754323 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_init.mod cmake/ice/CMakeFiles/ice.dir/ice_init.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/cice_runmod.mod cmake/ice/CMakeFiles/ice.dir/cice_runmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/ice_step_mod.mod cmake/ice/CMakeFiles/ice.dir/ice_step_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_init.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o built in 0.214958 seconds /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/source/ice_step_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbasetype.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbasetype.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_RunMod.F90.o.provides.build [ 26%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/CICE_InitMod.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/infnan.mod cmake/atm/CMakeFiles/atm.dir/infnan.mod.stamp GNU [ 26%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/error_messages.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o built in 0.232513 seconds [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/interpolate_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o built in 0.205476 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrstatussimtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrstatussimtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveClappHornberg1978Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesGlobals.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParametersMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/mpp/src/mpp/util/mpp_abortutils.F90.o.provides.build [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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0.419090 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_LandunitType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/kinds.F90.o built in 0.187739 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/thread_mod.mod cmake/atm/CMakeFiles/atm.dir/thread_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/Tracer_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_infnan_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/string_utils.mod cmake/atm/CMakeFiles/atm.dir/string_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_log_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRStatusSimType.F90.o.provides.build [ 27%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/wrap_nf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/params_mod.mod cmake/atm/CMakeFiles/atm.dir/params_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varpar.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ll_mod.mod cmake/atm/CMakeFiles/atm.dir/ll_mod.mod.stamp GNU [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o [ 27%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o Target CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o built in 0.741207 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/ice/cice_initmod.mod cmake/ice/CMakeFiles/ice.dir/cice_initmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/CICE_InitMod.F90.o.provides.build [ 28%] Building Fortran object cmake/ice/CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBLCKX=1 -DBLCKY=1 -DCCSMCOUPLED -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DMXBLCKS=1 -DNCAT=1 -DNDEBUG -DNO_R16 -DNTR_AERO=0 -DNXGLOB=1 -DNYGLOB=1 -Dcoupled -Dncdf -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/ice/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.cice -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/mpi -I/home/jenkins/workspace/branch_e3sm_test/components/cice/src/source -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/cice/src/drivers/cpl/ice_comp_mct.F90 -o CMakeFiles/ice.dir/__/__/cice/src/drivers/cpl/ice_comp_mct.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o built in 0.177144 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/domain_mod.mod cmake/atm/CMakeFiles/atm.dir/domain_mod.mod.stamp GNU [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o built in 0.307616 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o built in 0.267007 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sort_mod.mod cmake/atm/CMakeFiles/atm.dir/sort_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_types.mod cmake/atm/CMakeFiles/atm.dir/m_types.mod.stamp GNU [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/geopotential.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o built in 0.164675 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pspect.mod cmake/atm/CMakeFiles/atm.dir/pspect.mod.stamp GNU [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTGenericMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesLitterMod.F90.o built in 0.310435 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chem_mods.mod cmake/atm/CMakeFiles/atm.dir/chem_mods.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/column_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/column_varcon.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/geopotential.F90.o built in 0.233195 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/buffer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o [ 28%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o built in 0.204588 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/srf_field_check.mod cmake/atm/CMakeFiles/atm.dir/srf_field_check.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_carbonstaterecvtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_carbonstaterecvtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_util.mod 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o built in 0.199507 seconds [ 28%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o built in 0.398842 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_prod_loss.F90.o built in 0.211176 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_indprd.F90.o built in 0.237567 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_regression_module.mod cmake/lnd/CMakeFiles/lnd.dir/betr_regression_module.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o built in 0.170696 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_adjrxt.F90.o built in 0.208560 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lin_matrix.F90.o built in 0.197159 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesIOVariableKindMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/centuryecaouttype.mod cmake/lnd/CMakeFiles/lnd.dir/centuryecaouttype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_factor.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_factor.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lu_solve.mod cmake/atm/CMakeFiles/atm.dir/mo_lu_solve.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_bgc/PlantNutKineticsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_carbonstateRecvType.F90.o.provides.build [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_negtrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o built in 0.173297 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_nitrogenstateRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_phosphorusstateRecvType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_regression_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/column_varcon.F90.o.provides.build Target CMakeFiles/atm.dir/buffer.F90.o built in 1.315327 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/elm_varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateshydrowtfmod.mod cmake/lnd/CMakeFiles/lnd.dir/fateshydrowtfmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_trislv.mod cmake/atm/CMakeFiles/atm.dir/mo_trislv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fateslittermod.mod cmake/lnd/CMakeFiles/lnd.dir/fateslittermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtgenericmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtgenericmod.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_inter.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_mpi_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_mpi_mod.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_nln_matrix.F90.o built in 0.202918 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_negtrc.F90.o built in 0.202347 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartVariableType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_inter.F90.o built in 0.255397 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_schu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartVariableType.F90.o built in 0.220070 seconds [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_calcoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTLossFluxesMod.F90.o built in 0.293776 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_zadj.mod cmake/atm/CMakeFiles/atm.dir/mo_zadj.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeofluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeofluxtype.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryVariableType.F90.o built in 0.410332 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_biogeophysinputtype.mod cmake/lnd/CMakeFiles/lnd.dir/betr_biogeophysinputtype.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_calcoe.F90.o built in 0.199062 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_schu.F90.o built in 0.230731 seconds [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_ColumnType.F90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util/BiogeoConType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_phtadj.F90.o built in 0.198320 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_sad_data.mod cmake/atm/CMakeFiles/atm.dir/m_sad_data.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/QSatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sv_decomp.mod cmake/atm/CMakeFiles/atm.dir/sv_decomp.mod.stamp GNU [ 29%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_heatnirco2.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_heatnirco2.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/m_sad_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesHydroWTFMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jpl.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_trislv.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesUtilsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_zadj.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTGenericMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spehox.F90.o built in 0.216019 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/sv_decomp.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/CenturyECAOutType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_aerocondType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/chem_mods.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeoFluxType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/m_rxt_id.mod cmake/atm/CMakeFiles/atm.dir/m_rxt_id.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/m_spc_id.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_dtype/BeTR_biogeophysInputType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_factor.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_lu_solve.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_grid/BeTR_PatchType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_rxt_rates_conv.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_mpi_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/m_types.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_util.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cmparray_mod.mod cmake/atm/CMakeFiles/atm.dir/cmparray_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o built in 0.170901 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hirsbtpar.mod cmake/atm/CMakeFiles/atm.dir/hirsbtpar.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/GridcellType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o built in 0.199429 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parrrsw.mod cmake/atm/CMakeFiles/atm.dir/parrrsw.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o built in 0.235607 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellType.F90.o built in 0.220467 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parrrtm.mod cmake/atm/CMakeFiles/atm.dir/parrrtm.mod.stamp GNU [ 29%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mcica_random_numbers.mod cmake/atm/CMakeFiles/atm.dir/mcica_random_numbers.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitType.F90.o built in 0.214075 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mersennetwister.mod cmake/atm/CMakeFiles/atm.dir/mersennetwister.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationType.F90.o built in 0.200540 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrlw_con.mod cmake/atm/CMakeFiles/atm.dir/rrlw_con.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtlossfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtlossfluxesmod.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/ncdio_pio.F90 -o CMakeFiles/lnd.dir/ncdio_pio.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_vsn.mod cmake/atm/CMakeFiles/atm.dir/rrsw_vsn.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_sys_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_sys_mod.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNDecompCascadeConType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeCon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o built in 0.164298 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_wvn.f90.o built in 0.187726 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o built in 0.206406 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_cld.mod cmake/atm/CMakeFiles/atm.dir/rrsw_cld.mod.stamp GNU [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TridiagonalMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PlantMicKineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o built in 0.197306 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o built in 0.228382 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o built in 0.269547 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o built in 0.186393 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o built in 0.187487 seconds [ 30%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_bgcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg18.f90.o built in 0.189529 seconds [ 30%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o Target CMakeFiles/lnd.dir/ncdio_pio.F90.o built in 0.812136 seconds [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o built in 0.167449 seconds [ 31%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg19.f90.o built in 0.192002 seconds [ 32%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_thType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg20.f90.o built in 0.189599 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/DaylengthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o built in 0.190698 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o built in 0.183829 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o built in 0.284194 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o built in 0.198166 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnTemplateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o built in 0.198258 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPriorWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o built in 0.197053 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o built in 0.181438 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o built in 0.186257 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o built in 0.186887 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o built in 0.190024 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/QSatMod.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynEDMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg28.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o built in 0.189380 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnType.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o built in 0.170038 seconds /usr/bin/cmake 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHydraulicsMemMod.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o built in 1.377623 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/error_code.mod cmake/atm/CMakeFiles/atm.dir/error_code.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_sys_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_flags.mod cmake/atm/CMakeFiles/atm.dir/model_flags.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameter_indices.mod cmake/atm/CMakeFiles/atm.dir/parameter_indices.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg29.f90.o built in 0.188653 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ncdio_pio.mod cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/GetGlobalValuesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o built in 0.219482 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o built in 0.198961 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDTypesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stat_file_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_model.F90.o built in 0.200277 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cndecompcascadecontype.mod cmake/lnd/CMakeFiles/lnd.dir/cndecompcascadecontype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o built in 0.229447 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lapack_interfaces.mod cmake/atm/CMakeFiles/atm.dir/lapack_interfaces.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/penta_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stat_file_module.F90.o built in 0.214961 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakecon.mod cmake/lnd/CMakeFiles/lnd.dir/lakecon.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/tridiag_lu_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/tridiag_lu_solver.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDTypesMod.F90.o built in 0.355643 seconds [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/endian.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_assert_mod.F90.o built in 0.261240 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/penta_lu_solver.F90.o built in 0.267208 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tridiagonalmod.mod cmake/lnd/CMakeFiles/lnd.dir/tridiagonalmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/plantmickineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/plantmickineticsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_names.mod cmake/atm/CMakeFiles/atm.dir/input_names.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNDecompCascadeConType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mt95.mod cmake/atm/CMakeFiles/atm.dir/mt95.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/babortutils.mod cmake/lnd/CMakeFiles/lnd.dir/babortutils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_bgctype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_bgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pbl_utils.mod cmake/atm/CMakeFiles/atm.dir/pbl_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/trb_mtn_stress.mod cmake/atm/CMakeFiles/atm.dir/trb_mtn_stress.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_thtype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_thtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_utils.mod cmake/atm/CMakeFiles/atm.dir/gw_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PlantMicKineticsMod.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_arrays.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/endian.F90.o built in 0.199865 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynedmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynedmod.mod.stamp GNU [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/math_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o built in 0.196769 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/DaylengthMod.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/parameters_silhs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o built in 0.219571 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeCon.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/diffusion_solver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/diffusion_solver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o built in 0.220934 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TridiagonalMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/random_xgc.mod cmake/atm/CMakeFiles/atm.dir/random_xgc.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o built in 0.581439 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnTemplateMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynEDMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_instance.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPriorWeightsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/babortutils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_logfile.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_timer_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_timer_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_bgcType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_thType.F90.o.provides.build [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/gauaw_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/ncdio_pio.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/getglobalvaluesmod.mod cmake/lnd/CMakeFiles/lnd.dir/getglobalvaluesmod.mod.stamp GNU [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/restUtilMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_dataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o Target CMakeFiles/lnd.dir/restUtilMod.F90.o built in 0.409084 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o built in 0.190301 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/infnan.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/mpishorthand.F.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initverticalmod.mod cmake/lnd/CMakeFiles/lnd.dir/initverticalmod.mod.stamp GNU /usr/bin/cmake -E touch 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o [ 33%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/vrtmap.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_dataType.F90.o built in 0.251050 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/cam_cpl_indices.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_timer_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dycore.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/GetGlobalValuesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/random_xgc.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initVerticalMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cmparray_mod.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/abortutils.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o built in 0.232179 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restutilmod.mod cmake/lnd/CMakeFiles/lnd.dir/restutilmod.mod.stamp GNU /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90:1382:0: list = trim(l1)//":"//trim(list) Warning: ‘__builtin_memset’ specified size between 9223372036854775808 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o built in 0.188847 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_utils.F90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o built in 0.409367 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbtpar.f90.o.provides.build [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/MathfuncMod.F90.o built in 0.276909 seconds [ 33%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BeTRTracerType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesAllometryMod.F90.o built in 0.362389 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceTypesMod.F90.o built in 0.526276 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_data.F90.o.provides.build [ 34%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betr_timemod.mod cmake/lnd/CMakeFiles/lnd.dir/betr_timemod.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/KineticsMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pbl_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_datatype.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_datatype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/betr_time_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ppgrid.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_string_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_string_mod.mod.stamp GNU [ 34%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/error_code.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scyc.F90.o built in 0.211833 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_names.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinterfacetypesmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinterfacetypesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_interfaces.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitType.F90.o built in 0.239030 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/model_flags.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o built in 0.396017 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CH4varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mt95.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mathfuncmod.mod cmake/lnd/CMakeFiles/lnd.dir/mathfuncmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_netcdf.mod cmake/atm/CMakeFiles/atm.dir/output_netcdf.mod.stamp GNU [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4varcon.F90.o built in 0.192264 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameter_indices.F90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/soilorder_varcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynPatchStateUpdaterMod.F90.o built in 0.257728 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/parrrtm.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanParamsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o built in 0.200304 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParametersInterface.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o built in 0.962811 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_cld.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/paramUtilMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParametersInterface.F90.o built in 0.295335 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_con.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o built in 0.231284 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg01.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesallometrymod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesallometrymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg02.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/ChecksBalancesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDAccumulateFluxesMod.F90.o built in 0.189900 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg03.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/FuncPedotransferMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanParamsType.F90.o built in 0.716872 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg04.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/quadraticMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/ChecksBalancesMod.F90.o built in 0.201265 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg05.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/organicFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o built in 0.171440 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg06.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SharedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o built in 0.166086 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg07.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrtracertype.mod cmake/lnd/CMakeFiles/lnd.dir/betrtracertype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg08.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o built in 0.176220 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg09.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SharedParamsMod.F90.o built in 0.193813 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/kineticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/kineticsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg10.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridControlMod.F90.o built in 0.191786 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg11.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpIndexType.F90.o built in 0.237143 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg12.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o built in 0.318142 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg13.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o built in 0.190406 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg14.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o built in 0.292846 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg15.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o built in 0.716595 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_kg16.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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/usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_ref.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o built in 0.213544 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_tbl.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o built in 0.166470 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrlw_vsn.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ChemStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o built in 0.239815 seconds [ 35%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ChemStateType.F90.o built in 0.172134 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_random_numbers.f90.o.provides.build [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_cldprop.f90.o built in 0.244488 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterRetentionCurveFactoryMod.F90.o built in 0.168903 seconds [ 35%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MEGANFactorsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/LSparseMatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o built in 0.573337 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/parrrsw.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/spmdGathScatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o built in 0.221210 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_cld.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MEGANFactorsMod.F90.o built in 0.242533 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_con.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/domainLateralMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o built in 0.162559 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_ref.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o built in 0.305881 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_tbl.f90.o.provides.build [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynColumnStateUpdaterMod.F90.o [ 36%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_types/EMI_DataDimensionMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o built in 0.207945 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_vsn.f90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o built in 0.552876 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/string_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_string_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/xpavg_mod.mod cmake/atm/CMakeFiles/atm.dir/xpavg_mod.mod.stamp GNU [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ColumnMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_util/bshr_nl_mod.F90.o built in 0.166606 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/domain_mod.F90.o.provides.build [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/LandunitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_5.F90.o built in 7.028889 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/PatchMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/ColumnMod.F90.o built in 0.212379 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/ll_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/abortutils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/params_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clm_time_manager.mod cmake/lnd/CMakeFiles/lnd.dir/clm_time_manager.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sort_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/pftvarcon.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/LandunitMod.F90.o built in 0.197214 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/thread_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/topounittype.mod cmake/lnd/CMakeFiles/lnd.dir/topounittype.mod.stamp GNU [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/apex_subs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/msise00.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o built in 0.179437 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils/AnnualFluxDribbler.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o built in 0.247890 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ch4varcon.mod cmake/lnd/CMakeFiles/lnd.dir/ch4varcon.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpatchstateupdatermod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpatchstateupdatermod.mod.stamp GNU [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationPropertiesType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/msise00.F90.o built in 0.470653 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilorder_varcon.mod cmake/lnd/CMakeFiles/lnd.dir/soilorder_varcon.mod.stamp GNU [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -O0 -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_k_g.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/apex_subs.F90.o built in 0.653797 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanparamstype.mod cmake/lnd/CMakeFiles/lnd.dir/urbanparamstype.mod.stamp GNU [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cpslec.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cpslec.F90.o built in 0.209667 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesparametersinterface.mod cmake/lnd/CMakeFiles/lnd.dir/fatesparametersinterface.mod.stamp GNU [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/bnddyi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationPropertiesType.F90.o built in 0.608804 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/paramutilmod.mod cmake/lnd/CMakeFiles/lnd.dir/paramutilmod.mod.stamp GNU [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/sgexx.F90.o built in 1.535373 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire/SFParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/bnddyi.F90.o built in 0.197042 seconds [ 37%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynTimeInfoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFParamsMod.F90.o built in 0.226917 seconds [ 37%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/wrap_mpi.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynTimeInfoMod.F90.o built in 0.203569 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/fft99.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTParamsFATESMod.F90.o built in 0.559555 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/surfrdUtilsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/wrap_mpi.F90.o built in 0.328620 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edaccumulatefluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/edaccumulatefluxesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/units.mod cmake/atm/CMakeFiles/atm.dir/units.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/fft99.F90.o built in 0.388628 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdUtilsMod.F90.o built in 0.236916 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/drydep_mod.mod cmake/atm/CMakeFiles/atm.dir/drydep_mod.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCNPMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/RootBiophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/parteh/PRTAllometricCarbonMod.F90.o built in 0.308870 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/time_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/time_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/RootBiophysMod.F90.o built in 0.205458 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/geopotential.mod cmake/atm/CMakeFiles/atm.dir/geopotential.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sharedparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/sharedparamsmod.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o built in 0.330351 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_heatnirco2.mod 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cmake_copy_f90_mod cmake/atm/rrsw_kg28.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg28.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerBoundaryCondType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrsw_kg29.mod cmake/atm/CMakeFiles/atm.dir/rrsw_kg29.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerCoeffType.F90.o.provides.build [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridRestMod.F90.o built in 0.413405 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TracerStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/FindRootMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/InterpolationMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamSetWatIsoMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bshr_nl_mod.mod cmake/lnd/CMakeFiles/lnd.dir/bshr_nl_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bncdio_pio.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columnmod.mod cmake/lnd/CMakeFiles/lnd.dir/columnmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/FuncPedotransferMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/landunitmod.mod cmake/lnd/CMakeFiles/lnd.dir/landunitmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/patchmod.mod cmake/lnd/CMakeFiles/lnd.dir/patchmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initInterp.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/organicFileMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/paramUtilMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pftvarcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/soilorder_varcon.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/domainLateralMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/elm_time_manager.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o built in 0.271077 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/quadraticMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/spmdGathScatMod.F90.o.provides.build [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_cldprmc.f90.o built in 0.286640 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/accumulMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridAveMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_cldprop.f90.o built in 0.296886 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/annualfluxdribbler.mod cmake/lnd/CMakeFiles/lnd.dir/annualfluxdribbler.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_reftra.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_reftra.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationpropertiestype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationpropertiestype.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o built in 0.311175 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o built in 0.223751 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o built in 0.675560 seconds [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/array_index.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o built in 0.172790 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtinitparamsfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtinitparamsfatesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sfparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/sfparamsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyntimeinfomod.mod cmake/lnd/CMakeFiles/lnd.dir/dyntimeinfomod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfrdutilsmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfrdutilsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtallometriccarbonmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtallometriccarbonmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/prtallometriccnpmod.mod cmake/lnd/CMakeFiles/lnd.dir/prtallometriccnpmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/rootbiophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/rootbiophysmod.mod.stamp GNU [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/array_index.F90.o built in 0.199619 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpcompettype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpcompettype.mod.stamp GNU [ 38%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/constants_clubb.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_taumol.f90.o built in 0.679769 seconds [ 38%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o built in 0.191736 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_model.mod cmake/atm/CMakeFiles/atm.dir/parameters_model.mod.stamp GNU [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/constants_clubb.F90.o built in 0.195461 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/filtermod.mod cmake/lnd/CMakeFiles/lnd.dir/filtermod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stat_file_module.mod cmake/atm/CMakeFiles/atm.dir/stat_file_module.mod.stamp GNU [ 39%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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[ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/tracerbalancemod.mod cmake/lnd/CMakeFiles/lnd.dir/tracerbalancemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilordercontype.mod cmake/lnd/CMakeFiles/lnd.dir/soilordercontype.mod.stamp GNU [ 40%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ComputeSeedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o built in 0.172419 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/endian.mod cmake/atm/CMakeFiles/atm.dir/endian.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/LSparseMatMod.F90.o.provides.build [ 41%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o built in 0.207088 seconds [ 41%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o built in 0.245064 seconds [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/decompInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o built in 0.224007 seconds [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o built in 0.755285 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_5.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_5.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_Atm2LndType_DataMod.F90.o built in 0.181313 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/latin_hypercube_arrays.mod cmake/atm/CMakeFiles/atm.dir/latin_hypercube_arrays.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o built in 0.193362 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/math_utilities.mod cmake/atm/CMakeFiles/atm.dir/math_utilities.mod.stamp GNU [ 41%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o built in 0.185391 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_silhs.mod cmake/atm/CMakeFiles/atm.dir/parameters_silhs.mod.stamp GNU [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o built in 0.180014 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diffusion_solver.mod cmake/atm/CMakeFiles/atm.dir/diffusion_solver.mod.stamp GNU [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o built in 0.608715 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/error_messages.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o built in 0.190289 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gauaw_mod.mod cmake/atm/CMakeFiles/atm.dir/gauaw_mod.mod.stamp GNU [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o built in 0.186858 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/interpolate_data.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o built in 0.219687 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/srchutil.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o built in 0.204049 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/units.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/initsubgridmod.mod cmake/lnd/CMakeFiles/lnd.dir/initsubgridmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vrtmap_mod.mod cmake/atm/CMakeFiles/atm.dir/vrtmap_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridrestmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridrestmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/wrap_nf.F90.o.provides.build [ 42%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrnmr.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_rtrn.f90.o built in 0.305231 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/PatchMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_aer.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/SoilorderConType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg16.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/filterMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg17.f90.o.provides.build Target 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg21.f90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/utils/AnnualFluxDribbler.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg22.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/accumulmod.mod cmake/lnd/CMakeFiles/lnd.dir/accumulmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg23.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridavemod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridavemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg24.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edparamsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessynchronizedparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessynchronizedparamsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg25.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg26.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrsw_kg27.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpforctype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpforctype.mod.stamp GNU [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_pflotranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o built in 0.182914 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_reftra.f90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o built in 0.190686 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radconstants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/transportmod.mod cmake/lnd/CMakeFiles/lnd.dir/transportmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_arrays.F90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o built in 0.197808 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/math_utilities.F90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCPlantSoilBGCType.F90.o built in 0.206952 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/parameters_silhs.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bhistfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/bhistfilemod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o built in 0.210442 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/marsaglia.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/quicksort.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/computeseedmod.mod cmake/lnd/CMakeFiles/lnd.dir/computeseedmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompinitmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sgexx.mod cmake/atm/CMakeFiles/atm.dir/sgexx.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/xpavg_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_datamod.mod 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/spmd_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_soilstatetype_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_soilstatetype_datamod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/drydep_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_temperaturetype_datamod.mod 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CNCarbonStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_setrxt.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_CanopyStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_ChemStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_EnergyFluxType_DataMod.F90.o.provides.build [ 43%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilHydrologyType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_SoilStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_TemperatureType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterFluxType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_WaterStateType_DataMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSynchronizedParamsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpForcType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/PlantSoilBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/TransportMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_math/ODEMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/bhistFileMod.F90.o.provides.build /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/spmd_utils.F90:53:7: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/accumulMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/decompInitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridAveMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/surfrdMod.F90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/histFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o built in 0.221942 seconds [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDPftvarcon.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o built in 0.363052 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynfilemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tracname.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatessizeagetypeindicesmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatessizeagetypeindicesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_setrxt.F90.o.provides.build [ 43%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o built in 0.171342 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_lw.f90.o built in 0.389855 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o built in 0.721773 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o built in 0.317224 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_setcoef.f90.o built in 0.431420 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o built in 0.227308 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_pflotranmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_pflotranmod.mod.stamp GNU [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o built in 0.272669 seconds [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_taumol.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o built in 0.319812 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o built in 1.792795 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/mcica_subcol_gen_sw.f90.o built in 0.522255 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/diocplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/diocplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_setcoef.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_setcoef.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopeplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopeplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprmc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mockplantsoilbgctype.mod cmake/lnd/CMakeFiles/lnd.dir/mockplantsoilbgctype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_cldprop.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_cldprop.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ComputeSeedMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_taumol.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_taumol.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o built in 0.757802 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/array_index.mod cmake/atm/CMakeFiles/atm.dir/array_index.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynFileMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constants_clubb.mod cmake/atm/CMakeFiles/atm.dir/constants_clubb.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesSizeAgeTypeIndicesMod.F90.o.provides.build [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/T_in_K_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type.F90.o built in 0.220078 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopePlantSoilBGCType.F90.o.provides.build [ 44%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/lapack_wrap.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o built in 0.443766 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockPlantSoilBGCType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_pflotranMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/histfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/histfilemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpftvarcon.mod cmake/lnd/CMakeFiles/lnd.dir/edpftvarcon.mod.stamp GNU [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarMod.F90 -o CMakeFiles/lnd.dir/dynVarMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/T_in_K_module.F90.o built in 0.219402 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o built in 0.211771 seconds Target CMakeFiles/lnd.dir/dynVarMod.F90.o built in 0.248410 seconds [ 44%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o [ 45%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/parameters_tunable.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/lapack_wrap.F90.o built in 0.383715 seconds [ 45%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o built in 0.211493 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/index_mapping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/index_mapping.F90.o built in 0.206533 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/parameters_tunable.F90.o built in 0.603436 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire/SFMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o built in 0.353334 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o built in 0.378586 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/EnergyFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o built in 1.238000 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_semi_implicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o built in 0.357495 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_semi_implicit.F90.o built in 0.207871 seconds [ 46%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o built in 0.249200 seconds [ 46%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_roots.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_roots.F90.o built in 0.230922 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_parameter_module.F90.o built in 1.420859 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o built in 0.358532 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/LY93_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o built in 0.225611 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SolarAbsorbedType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_k_g.f90.o built in 6.461893 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_hybrid_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o built in 0.301803 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_tsdadg_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o built in 0.706384 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf.F90.o built in 0.223562 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_tsdadg_pdf.F90.o built in 0.258867 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/TopounitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_utilities.F90.o built in 0.260550 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sigma_sqd_w_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sigma_sqd_w_module.F90.o built in 0.220915 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calendar.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o built in 0.573067 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/matrix_operations.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o built in 0.395872 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calendar.F90.o built in 0.211185 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterfluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_operations.F90.o built in 0.280197 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/hydromet_pdf_parameter_module.F90.o built in 0.238150 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diagnose_correlations_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diagnose_correlations_module.F90.o built in 0.272008 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/Nc_Ncn_eqns.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o built in 0.499609 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_diffusion.mod cmake/atm/CMakeFiles/atm.dir/gw_diffusion.mod.stamp GNU [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o built in 0.510517 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_utils.mod.stamp GNU [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Nc_Ncn_eqns.F90.o built in 0.220187 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/generate_uniform_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o built in 0.255525 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/transform_to_pdf_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o built in 0.221330 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o built in 0.372379 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/scream_abortutils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o built in 0.295214 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/GridcellDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o built in 0.209839 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/gauaw_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/vrtmap.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_utils.F90.o.provides.build /usr/bin/cmake -E 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_setcoef.f90.o.provides.build [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o built in 0.377130 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mcica_subcol_gen_lw.mod cmake/atm/CMakeFiles/atm.dir/mcica_subcol_gen_lw.mod.stamp GNU [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o built in 0.717535 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_setcoef.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_setcoef.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_cldprmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_cldprmc.mod.stamp GNU /usr/bin/cmake -E 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share 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CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o built in 0.563745 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/file_functions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o built in 0.218523 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o built in 0.591106 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/interpolation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o built in 0.249945 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/subgridWeightsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o built in 0.724004 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o built in 0.548940 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_type.mod cmake/atm/CMakeFiles/atm.dir/stats_type.mod.stamp GNU [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glcDiagnosticsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o built in 0.330993 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/t_in_k_module.mod cmake/atm/CMakeFiles/atm.dir/t_in_k_module.mod.stamp GNU [ 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/LandunitDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o built in 0.288580 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lapack_wrap.mod cmake/atm/CMakeFiles/atm.dir/lapack_wrap.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parameters_tunable.mod 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/usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ly93_pdf.mod cmake/atm/CMakeFiles/atm.dir/ly93_pdf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_hybrid_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_hybrid_pdf.mod.stamp GNU [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o built in 0.231277 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_tsdadg_pdf.mod cmake/atm/CMakeFiles/atm.dir/new_tsdadg_pdf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_datamod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_datamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_utilities.mod cmake/atm/CMakeFiles/atm.dir/pdf_utilities.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDPftvarcon.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sigma_sqd_w_module.mod cmake/atm/CMakeFiles/atm.dir/sigma_sqd_w_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpDecompType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/calendar.mod cmake/atm/CMakeFiles/atm.dir/calendar.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/PlantSoilBgcCnpType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/matrix_operations.mod cmake/atm/CMakeFiles/atm.dir/matrix_operations.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o built in 0.231720 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_core/BGCReactionsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hydromet_pdf_parameter_module.mod cmake/atm/CMakeFiles/atm.dir/hydromet_pdf_parameter_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diagnose_correlations_module.mod cmake/atm/CMakeFiles/atm.dir/diagnose_correlations_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_para/TracerParamsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nc_ncn_eqns.mod cmake/atm/CMakeFiles/atm.dir/nc_ncn_eqns.mod.stamp GNU [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/est_kessler_microphys_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o built in 0.408440 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/histFileMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/generate_uniform_sample_module.mod 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyStateType.F90.o built in 0.365597 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/transform_to_pdf_module.mod cmake/atm/CMakeFiles/atm.dir/transform_to_pdf_module.mod.stamp GNU [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/CNStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o built in 0.703570 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scream_abortutils.mod cmake/atm/CMakeFiles/atm.dir/scream_abortutils.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/LY93_pdf.F90.o.provides.build 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_cldprmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rtrnmc.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_spcvrt.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_spcvrt.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/generate_uniform_sample_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/transform_to_pdf_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/spmd_utils.F90.o.provides.build [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/physconst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o built in 0.270588 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_control_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o built in 0.201237 seconds [ 47%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_map_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o built in 1.082587 seconds [ 47%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenFluxType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o built in 1.747378 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/time_manager.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o built in 0.504135 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o built in 0.384174 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/ioFileMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o built in 0.507979 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_sim_dat.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o built in 0.225105 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elmfates_paraminterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o built in 9.154295 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_sw_spcvmc.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_sw_spcvmc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvarmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvarmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/file_functions.mod 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_type_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o built in 0.237904 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_variables.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o built in 0.227643 seconds [ 48%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o Target 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/matrix_solver_wrapper.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o built in 0.287876 seconds [ 48%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_importance_sample_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2atmtype.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2atmtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilhydrologytype.mod cmake/lnd/CMakeFiles/lnd.dir/soilhydrologytype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gridcelldatatype.mod cmake/lnd/CMakeFiles/lnd.dir/gridcelldatatype.mod.stamp GNU [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o built in 0.550015 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o built in 0.216706 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_common.F90.o.provides.build [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/FrictionVelocityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o built in 0.365784 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosoltype.mod cmake/lnd/CMakeFiles/lnd.dir/aerosoltype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/scream_abortutils.F90.o.provides.build [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o built in 1.745478 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/file_functions.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/interpolation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/saturation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_spcvmc.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_spcvrt.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/est_kessler_microphys_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physconst.mod cmake/atm/CMakeFiles/atm.dir/physconst.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o built in 0.468836 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_control_mod.mod cmake/atm/CMakeFiles/atm.dir/cam_control_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/diocbgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/diocbgcreactionstype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_map_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_map_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/h2oisotopebgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/h2oisotopebgcreactionstype.mod.stamp GNU [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/comsrf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share 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CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityMod.F90.o built in 0.338722 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/physical_constants.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o built in 0.229600 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/mockbgcreactionstype.mod cmake/lnd/CMakeFiles/lnd.dir/mockbgcreactionstype.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o built in 0.189357 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/subgridweightsmod.mod cmake/lnd/CMakeFiles/lnd.dir/subgridweightsmod.mod.stamp GNU [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/glb_verif_smry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o built in 0.243061 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glcdiagnosticsmod.mod cmake/lnd/CMakeFiles/lnd.dir/glcdiagnosticsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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-DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/time_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/filenames.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/time_utils.F90.o built in 0.201510 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusFluxType.F90.o.provides.build [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_saturation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o built in 0.244532 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolType.F90.o.provides.build [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o built in 0.436614 seconds [ 49%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/orbit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_params.F90.o built in 0.189057 seconds [ 49%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynLandunitAreaMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o built in 0.268555 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarTimeInterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/orbit.F90.o built in 0.204617 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hirsbt.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o built in 0.184958 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o Target CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o built in 0.231552 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_lw_rad.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_lw_rad.mod.stamp GNU [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/reweightMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o built in 0.250066 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o built in 0.169771 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ColumnType_ExchangeMod.F90.o built in 0.208011 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_lw/rrtmg_lw_init.f90.o built in 0.705541 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o built in 2.097064 seconds [ 50%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/grid_class.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Filter_ExchangeMod.F90.o built in 0.171041 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_sw/rrtmg_sw_init.f90.o built in 0.691861 seconds [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Landunit_ExchangeMod.F90.o built in 0.176154 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_type_utilities.mod cmake/atm/CMakeFiles/atm.dir/stats_type_utilities.mod.stamp GNU [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o built in 0.193856 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_variables.mod cmake/atm/CMakeFiles/atm.dir/stats_variables.mod.stamp GNU [ 50%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o built in 0.430831 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o built in 0.264284 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o built in 0.189367 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/matrix_solver_wrapper.mod cmake/atm/CMakeFiles/atm.dir/matrix_solver_wrapper.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/new_hybrid_pdf_main.mod cmake/atm/CMakeFiles/atm.dir/new_hybrid_pdf_main.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/EnergyFluxType.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o built in 0.181641 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/initGridCellsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/new_pdf_main.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/output_grads.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o built in 0.240202 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/FrictionVelocityType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedFluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyType.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o built in 0.287651 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SolarAbsorbedType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoType.F90.o.provides.build [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterfluxType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/GridcellDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/LandunitDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/TopounitDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_definition/EMI_DataMod.F90.o.provides.build [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o built in 0.525097 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/FatesSoilBGCFluxMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o built in 0.207549 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantHydraulicsMod.F90.o.provides.build [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE 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-I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_lh_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/fire/SFMainMod.F90.o.provides.build [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o built in 0.178641 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesHistoryInterfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesParameterDerivedMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/DIOCBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/H2OIsotopeBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/MockBGCReactionsType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glcDiagnosticsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/subgridWeightsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopystatetype.mod cmake/lnd/CMakeFiles/lnd.dir/canopystatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonfluxtype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenfluxtype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenfluxtype.mod.stamp GNU [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNitrogenStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o built in 0.206213 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o built in 0.241244 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndtype.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndtype.mod.stamp GNU [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/ColumnDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_rad_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_sw_rad.f90.o built in 2.094069 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/clmfatesparaminterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/clmfatesparaminterfacemod.mod.stamp GNU [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_sfc_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o built in 0.209491 seconds [ 51%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd/dynVarTimeUninterpMod.F90 -o CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_sfc_module.F90.o built in 0.229093 seconds [ 51%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o Target CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o built in 0.208436 seconds [ 52%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o built in 0.826446 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o built in 0.241808 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_reader.mod cmake/atm/CMakeFiles/atm.dir/input_reader.mod.stamp GNU [ 53%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_zt_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDBtranMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o built in 0.270211 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/precipitation_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zm_module.F90.o built in 0.703545 seconds [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o built in 0.390500 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edloggingmortalitymod.mod cmake/lnd/CMakeFiles/lnd.dir/edloggingmortalitymod.mod.stamp GNU [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o built in 0.411182 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_convect.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o built in 0.330410 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonFluxType.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_front.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_zt_module.F90.o built in 1.363143 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnpnitdentype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnpnitdentype.mod.stamp GNU [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_oro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o built in 0.254086 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentsomtype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentsomtype.mod.stamp GNU [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/output_2D_samples_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o built in 0.807409 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_importance_sample_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_importance_sample_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/frictionvelocitymod.mod cmake/lnd/CMakeFiles/lnd.dir/frictionvelocitymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_control_mod.F90.o.provides.build [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VerticalProfileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o built in 0.247858 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrbgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/betrbgcmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ioFileMod.F90.o.provides.build [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/output_2D_samples_module.F90.o built in 0.260031 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/physconst.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/input_reader.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/matrix_solver_wrapper.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_hybrid_pdf_main.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_type_utilities.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_variables.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ext/rrtmg_mcica/rrtmg_lw_rad.f90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_importance_sample_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_map_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/time_manager.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/wei96.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o built in 0.349563 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tsinti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tsinti.F90.o built in 0.198549 seconds [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/glc2lndMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/wei96.F90.o built in 0.310911 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_constants.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o built in 0.788889 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/dust_sediment_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o built in 0.222202 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenFluxType.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o built in 0.292254 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/comsrf.mod cmake/atm/CMakeFiles/atm.dir/comsrf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynlandunitareamod.mod cmake/lnd/CMakeFiles/lnd.dir/dynlandunitareamod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvartimeinterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvartimeinterpmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constituents.mod cmake/atm/CMakeFiles/atm.dir/constituents.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physical_constants.mod cmake/atm/CMakeFiles/atm.dir/physical_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/reweightmod.mod cmake/lnd/CMakeFiles/lnd.dir/reweightmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/glb_verif_smry.mod cmake/atm/CMakeFiles/atm.dir/glb_verif_smry.mod.stamp GNU [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o cd 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o built in 0.301005 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/time_utils.mod cmake/atm/CMakeFiles/atm.dir/time_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/filenames.mod cmake/atm/CMakeFiles/atm.dir/filenames.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o built in 0.203898 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o built in 0.220474 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_saturation.mod cmake/atm/CMakeFiles/atm.dir/wv_saturation.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_params.mod cmake/atm/CMakeFiles/atm.dir/mo_params.mod.stamp GNU [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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-I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/atm2lndMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o built in 0.205972 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/CNStateType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_grads.mod cmake/atm/CMakeFiles/atm.dir/output_grads.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynLandunitAreaMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_lh_sfc_module.mod cmake/atm/CMakeFiles/atm.dir/stats_lh_sfc_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/base/ExternalModelBaseType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_lh_zt_module.mod cmake/atm/CMakeFiles/atm.dir/stats_lh_zt_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/betr/ExternalModelBETRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_rad_zm_module.mod cmake/atm/CMakeFiles/atm.dir/stats_rad_zm_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_chemstatetype_exchangemod.mod 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilHydrologyType_ExchangeMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o built in 0.258174 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_convect.mod cmake/atm/CMakeFiles/atm.dir/gw_convect.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_front.mod cmake/atm/CMakeFiles/atm.dir/gw_front.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_SoilStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDLoggingMortalityMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_oro.mod cmake/atm/CMakeFiles/atm.dir/gw_oro.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpNitDenType.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpSOMType.F90.o.provides.build [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_main/BetrBGCMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o built in 0.238865 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/filenames.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o built in 0.284615 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndType.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_paraminterfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/comsrf.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/initGridCellsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituents.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/reweightMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/glb_verif_smry.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_convect.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_front.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrogenstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrogenstatetype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_oro.F90.o.provides.build [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNCarbonStateType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hirsbt.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynvartimeuninterpmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynvartimeuninterpmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_saturation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/grid_class.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstatetype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/new_pdf_main.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/output_grads.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edbtranmod.mod cmake/lnd/CMakeFiles/lnd.dir/edbtranmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/precipitation_fraction.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edcohortdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edcohortdynamicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_sfc_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_lh_zt_module.F90.o.provides.build [ 54%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_rad_zt_module.F90.o.provides.build /usr/bin/cmake -E touch 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cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physical_constants.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_constants.mod cmake/atm/CMakeFiles/atm.dir/mo_constants.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_sediment_mod.mod cmake/atm/CMakeFiles/atm.dir/dust_sediment_mod.mod.stamp GNU [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dimensions_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o built in 0.246418 seconds [ 54%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_control.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o built in 0.219843 seconds [ 55%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o built in 0.571034 seconds [ 55%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/quadrature_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o built in 0.312337 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinterfacemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gas_wetdep_opts.mod cmake/atm/CMakeFiles/atm.dir/gas_wetdep_opts.mod.stamp GNU [ 56%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o built in 0.323765 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airmas.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o built in 0.496026 seconds [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveall.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o built in 0.209538 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/verticalprofilemod.mod cmake/lnd/CMakeFiles/lnd.dir/verticalprofilemod.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_waveo3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o built in 0.193903 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o built in 0.511620 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/reactionsfactory.mod cmake/lnd/CMakeFiles/lnd.dir/reactionsfactory.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ps2str.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setair.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o built in 0.190383 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/glc2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/glc2lndmod.mod.stamp GNU [ 56%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lymana.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o built in 0.203986 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNitrogenStateType.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelen.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o built in 0.290622 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateType.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_wavelab.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o built in 0.199085 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VerticalProfileMod.F90.o.provides.build [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sphers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o built in 0.188832 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_atm2lndtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_atm2lndtype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/gas_wetdep_opts.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_canopystatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_canopystatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_constants.F90.o.provides.build [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o built in 0.191983 seconds [ 57%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o built in 0.207110 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_helper_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o built in 0.186206 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o built in 0.257430 seconds [ 57%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mean_adv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o built in 0.263982 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/atm2lndmod.mod cmake/lnd/CMakeFiles/lnd.dir/atm2lndmod.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sponge_layer_damping.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o built in 0.231227 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_Atm2LndType_ExchangeMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/fill_holes.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o built in 0.461984 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CanopyStateType_ExchangeMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pos_definite_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o built in 0.234877 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_ChemStateType_ExchangeMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/turbulent_adv_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o built in 0.253492 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCohortDynamicsMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o built in 0.388201 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDBtranMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/calc_pressure.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o built in 0.264018 seconds [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o built in 0.256306 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInterfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/betr/betr_rxns/ReactionsFactory.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/numerical_check.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o built in 0.224155 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/atm2lndMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o built in 0.212506 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/skx_module.mod cmake/atm/CMakeFiles/atm.dir/skx_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/glc2lndMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/corr_varnce_module.mod cmake/atm/CMakeFiles/atm.dir/corr_varnce_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hetfrz_classnuc.mod cmake/atm/CMakeFiles/atm.dir/hetfrz_classnuc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cncarbonstatetype.mod cmake/lnd/CMakeFiles/lnd.dir/cncarbonstatetype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lh_microphys_var_covar_module.mod cmake/atm/CMakeFiles/atm.dir/lh_microphys_var_covar_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edmortalityfunctionsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edmortalityfunctionsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edphysiologymod.mod cmake/lnd/CMakeFiles/lnd.dir/edphysiologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/Skx_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNCarbonStateType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/corr_varnce_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/bgccentcnptype.mod cmake/lnd/CMakeFiles/lnd.dir/bgccentcnptype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/lh_microphys_var_covar_module.F90.o.provides.build [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o built in 0.387510 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelfatesmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelfatesmod.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o built in 0.493519 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o built in 0.199185 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelstubmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelstubmod.mod.stamp GNU [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_sediment_mod.F90.o.provides.build cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/dust_common.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/fates/ExternalModelFATESMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dimensions_mod.mod cmake/atm/CMakeFiles/atm.dir/dimensions_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/stub/ExternalModelStubMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_control.mod cmake/atm/CMakeFiles/atm.dir/phys_control.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDMortalityFunctionsMod.F90.o.provides.build [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/element_state.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o built in 0.227086 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPhysiologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/quadrature_mod.mod cmake/atm/CMakeFiles/atm.dir/quadrature_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesbstressmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesbstressmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o built in 0.240401 seconds [ 58%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chem_utls.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcCentCnpType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airmas.mod cmake/atm/CMakeFiles/atm.dir/mo_airmas.mod.stamp GNU [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/element_state.F90.o built in 0.199590 seconds [ 58%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o built in 0.210143 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waveall.mod cmake/atm/CMakeFiles/atm.dir/mo_waveall.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waveo3.mod cmake/atm/CMakeFiles/atm.dir/mo_waveo3.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_ps2str.mod cmake/atm/CMakeFiles/atm.dir/mo_ps2str.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setair.mod cmake/atm/CMakeFiles/atm.dir/mo_setair.mod.stamp GNU [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setcld.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o built in 0.274898 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lymana.mod cmake/atm/CMakeFiles/atm.dir/mo_lymana.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelen.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelen.mod.stamp GNU [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setozo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o built in 0.691901 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_wavelab.mod cmake/atm/CMakeFiles/atm.dir/mo_wavelab.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_cncarbonstatetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_cncarbonstatetype_exchangemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sphers.mod cmake/atm/CMakeFiles/atm.dir/mo_sphers.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesBstressMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airmas.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edpatchdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/edpatchdynamicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lymana.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_CNCarbonStateType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ps2str.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDPatchDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setair.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o built in 0.227055 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sphers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveall.F90.o.provides.build [ 59%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelab.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_wavelen.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waveo3.F90.o.provides.build [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/physics_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/physics_mod.F90.o built in 0.217191 seconds [ 59%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cldoptics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o built in 0.241780 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o built in 1.416397 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_helper_module.mod cmake/atm/CMakeFiles/atm.dir/advance_helper_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/diffusion.mod cmake/atm/CMakeFiles/atm.dir/diffusion.mod.stamp GNU [ 59%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesInventoryInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o built in 0.586582 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mean_adv.mod cmake/atm/CMakeFiles/atm.dir/mean_adv.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o built in 0.448642 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/turbulent_adv_pdf.mod cmake/atm/CMakeFiles/atm.dir/turbulent_adv_pdf.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeochem/EDCanopyStructureMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xp3_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xp3_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP/BgcReactionsCentECACnpType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/calc_pressure.mod cmake/atm/CMakeFiles/atm.dir/calc_pressure.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o built in 0.457253 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesinventoryinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesinventoryinitmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/numerical_check.mod cmake/atm/CMakeFiles/atm.dir/numerical_check.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/adg1_adg2_3d_luhar_pdf.mod cmake/atm/CMakeFiles/atm.dir/adg1_adg2_3d_luhar_pdf.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDMainMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/stats_clubb_utilities.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o built in 0.574692 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o built in 0.251895 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o built in 0.382005 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg1_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o built in 0.319120 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o built in 11.818495 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/latin_hypercube_driver_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/stats_clubb_utilities.F90.o built in 1.547435 seconds [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o built in 0.841942 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_control.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/applicationsfactory.mod cmake/lnd/CMakeFiles/lnd.dir/applicationsfactory.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/adg1_adg2_3d_luhar_pdf.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesInventoryInitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_helper_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/Applications/app_util/ApplicationsFactory.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp3_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/columndatatype.mod cmake/lnd/CMakeFiles/lnd.dir/columndatatype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/calc_pressure.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/EDInitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/latin_hypercube_driver_module.F90.o built in 0.834676 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edmainmod.mod cmake/lnd/CMakeFiles/lnd.dir/edmainmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/diffusion.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/FatesPlantRespPhotosynthMod.F90.o built in 0.570167 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edsurfaceradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/edsurfaceradiationmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/fill_holes.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o built in 0.386161 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mean_adv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/numerical_check.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropHarvestPoolsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceResistanceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceResistanceMod.F90.o built in 0.244609 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pos_definite_module.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o built in 0.259817 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o built in 0.271847 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sponge_layer_damping.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/turbulent_adv_pdf.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittVertTranspMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/AerosolMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o built in 0.435781 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittVertTranspMod.F90.o built in 0.449990 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dimensions_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/quadrature_mod.F90.o.provides.build [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DryDepVelocity.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DUSTMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DryDepVelocity.F90.o built in 0.345160 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/massborrow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DUSTMod.F90.o built in 0.419451 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o built in 3.038161 seconds [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg3.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/WoodProductsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/massborrow.F90.o built in 0.235182 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldaero_mod.mod cmake/atm/CMakeFiles/atm.dir/cldaero_mod.mod.stamp GNU [ 61%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/ErosionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg3.F90.o built in 0.245070 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_common.mod cmake/atm/CMakeFiles/atm.dir/dust_common.mod.stamp GNU [ 61%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/parallel_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o built in 0.315136 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_state.mod cmake/atm/CMakeFiles/atm.dir/element_state.mod.stamp GNU [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o built in 1.386874 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chem_utls.mod cmake/atm/CMakeFiles/atm.dir/mo_chem_utls.mod.stamp GNU [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o built in 0.248209 seconds [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_xsections.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_EnergyFluxType_ExchangeMod.F90.o built in 0.239428 seconds [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_rtlink.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterStateType_ExchangeMod.F90.o built in 0.321508 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setcld.mod cmake/atm/CMakeFiles/atm.dir/mo_setcld.mod.stamp GNU [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/WaterBudgetMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_xsections.F90.o built in 0.341631 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_rtlink.F90.o built in 0.261540 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setozo.mod cmake/atm/CMakeFiles/atm.dir/mo_setozo.mod.stamp GNU [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/set_cp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o built in 0.852342 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chem_utls.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/ColumnDataType.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setcld.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/biogeophys/EDSurfaceAlbedoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setozo.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDMainMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_mod.mod.stamp GNU [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types/VegetationDataType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o built in 0.199789 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cldoptics.mod cmake/atm/CMakeFiles/atm.dir/pkg_cldoptics.mod.stamp GNU [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clip_explicit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/WaterBudgetMod.F90.o built in 0.461123 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mono_flux_limiter.mod cmake/atm/CMakeFiles/atm.dir/mono_flux_limiter.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/edinitmod.mod cmake/lnd/CMakeFiles/lnd.dir/edinitmod.mod.stamp GNU [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/mixing_length.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o built in 0.321591 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesplantrespphotosynthmod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesplantrespphotosynthmod.mod.stamp GNU [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/pdf_closure_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o built in 0.575146 seconds [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && 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-I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/sfc_varnce_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o built in 1.066143 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stats_clubb_utilities.mod cmake/atm/CMakeFiles/atm.dir/stats_clubb_utilities.mod.stamp GNU [ 62%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o built in 0.302664 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cropharvestpoolsmod.mod cmake/lnd/CMakeFiles/lnd.dir/cropharvestpoolsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/almbetrnlmod.mod cmake/lnd/CMakeFiles/lnd.dir/almbetrnlmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg1_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg1_0.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceresistancemod.mod cmake/lnd/CMakeFiles/lnd.dir/surfaceresistancemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_utils.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittverttranspmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittverttranspmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/latin_hypercube_driver_module.mod cmake/atm/CMakeFiles/atm.dir/latin_hypercube_driver_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/aerosolmod.mod cmake/lnd/CMakeFiles/lnd.dir/aerosolmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg1_0.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrtype.mod cmake/lnd/CMakeFiles/lnd.dir/betrtype.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/drydepvelocity.mod cmake/lnd/CMakeFiles/lnd.dir/drydepvelocity.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dustmod.mod cmake/lnd/CMakeFiles/lnd.dir/dustmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cldoptics.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/woodproductsmod.mod cmake/lnd/CMakeFiles/lnd.dir/woodproductsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mono_flux_limiter.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropHarvestPoolsMod.F90.o.provides.build /usr/bin/cmake -E touch 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/cldaero_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/WoodProductsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/dust_common.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/AerosolMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/parallel_mod.mod cmake/atm/CMakeFiles/atm.dir/parallel_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_energyfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_energyfluxtype_exchangemod.mod.stamp GNU [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include 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touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/set_cp.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/EDInitMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o built in 1.598979 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clip_explicit.mod cmake/atm/CMakeFiles/atm.dir/clip_explicit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mixing_length.mod cmake/atm/CMakeFiles/atm.dir/mixing_length.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/ALMbetrNLMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sfc_varnce_module.mod cmake/atm/CMakeFiles/atm.dir/sfc_varnce_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/fatesrestartinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/fatesrestartinterfacemod.mod.stamp GNU [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/setup_clubb_pdf_params.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg2_0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o built in 2.203124 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/ErosionMod.F90.o.provides.build [ 62%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs/silhs_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o built in 0.298312 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanAlbedoMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clip_explicit.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/fates/main/FatesRestartInterfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/mixing_length.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/sfc_varnce_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/parallel_mod.F90.o.provides.build [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/coordinate_systems_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o built in 0.269588 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybrid_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o built in 0.206506 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/control_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o built in 0.261069 seconds [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/spmd_dyn.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o built in 0.227402 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/charge_neutrality.mod cmake/atm/CMakeFiles/atm.dir/charge_neutrality.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mass_xforms.mod cmake/atm/CMakeFiles/atm.dir/mo_mass_xforms.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_mean_mass.mod cmake/atm/CMakeFiles/atm.dir/mo_mean_mass.mod.stamp GNU [ 63%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_pchem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o built in 1.788891 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mass_xforms.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_mean_mass.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_windm_edsclrm_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o built in 0.243229 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_wp2_wp3_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o built in 0.823203 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xm_wpxp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o built in 1.958226 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_xp2_xpyp_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o built in 3.193988 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pdf_closure_module.mod cmake/atm/CMakeFiles/atm.dir/pdf_closure_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/setup_clubb_pdf_params.mod cmake/atm/CMakeFiles/atm.dir/setup_clubb_pdf_params.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/silhs_api_module.mod cmake/atm/CMakeFiles/atm.dir/silhs_api_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/pdf_closure_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/setup_clubb_pdf_params.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/silhs/silhs_api_module.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/coordinate_systems_mod.mod cmake/atm/CMakeFiles/atm.dir/coordinate_systems_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybrid_mod.mod cmake/atm/CMakeFiles/atm.dir/hybrid_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/control_mod.mod cmake/atm/CMakeFiles/atm.dir/control_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spmd_dyn.mod cmake/atm/CMakeFiles/atm.dir/spmd_dyn.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/charge_neutrality.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_pchem.mod cmake/atm/CMakeFiles/atm.dir/mo_pchem.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_windm_edsclrm_module.mod cmake/atm/CMakeFiles/atm.dir/advance_windm_edsclrm_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_wp2_wp3_module.mod cmake/atm/CMakeFiles/atm.dir/advance_wp2_wp3_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xm_wpxp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xm_wpxp_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/spmd_dyn.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_windm_edsclrm_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_wp2_wp3_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xm_wpxp_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/control_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/coordinate_systems_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybrid_mod.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edgetype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o built in 0.206933 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/reduction_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o built in 2.727468 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gridgraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o built in 0.295844 seconds [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/hybvcoord_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o built in 0.246070 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_pchem.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o built in 0.300199 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_xp2_xpyp_module.mod cmake/atm/CMakeFiles/atm.dir/advance_xp2_xpyp_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edgetype_mod.mod cmake/atm/CMakeFiles/atm.dir/edgetype_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/reduction_mod.mod cmake/atm/CMakeFiles/atm.dir/reduction_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gridgraph_mod.mod cmake/atm/CMakeFiles/atm.dir/gridgraph_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hybvcoord_mod.mod cmake/atm/CMakeFiles/atm.dir/hybvcoord_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_xp2_xpyp_module.F90.o.provides.build [ 64%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/advance_clubb_core_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edgetype_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gridgraph_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/hybvcoord_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/reduction_mod.F90.o.provides.build [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/pmgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o built in 0.197265 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/element_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o built in 0.244827 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metagraph_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o built in 0.299747 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/spacecurve_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/data_types/VegetationDataType.F90.o built in 10.948584 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vegetationdatatype.mod cmake/lnd/CMakeFiles/lnd.dir/vegetationdatatype.mod.stamp GNU [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TemperatureType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o built in 0.573697 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynHarvestMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o built in 0.397957 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/metis_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o built in 0.302264 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AnnualUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o built in 0.789124 seconds [ 65%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/vertremap_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o built in 0.275624 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/C14DecayMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o built in 9.683040 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonIsoFluxMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o built in 0.317948 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pmgrid.mod cmake/atm/CMakeFiles/atm.dir/pmgrid.mod.stamp GNU [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o built in 0.446153 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o built in 0.406984 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_mod.mod cmake/atm/CMakeFiles/atm.dir/element_mod.mod.stamp GNU [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNGapMortalityBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o built in 0.415469 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metagraph_mod.mod cmake/atm/CMakeFiles/atm.dir/metagraph_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o built in 0.693086 seconds [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o [ 65%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o built in 0.271875 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spacecurve_mod.mod cmake/atm/CMakeFiles/atm.dir/spacecurve_mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o built in 0.312670 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/derivative_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o built in 0.523964 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/eos.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o built in 0.260270 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GrowthRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o built in 0.279076 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o built in 0.270756 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/rgrid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/derivative_mod_base.F90.o built in 0.739389 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/rgrid.F90.o built in 0.193252 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PrecisionControlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o built in 0.387387 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o built in 0.293903 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/metis_mod.mod cmake/atm/CMakeFiles/atm.dir/metis_mod.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/EcosystemBalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mod.F90.o built in 0.377318 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/GapMortalityMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o built in 0.429443 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_base.mod cmake/atm/CMakeFiles/atm.dir/vertremap_base.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/advance_clubb_core_module.F90.o built in 5.215560 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg2_0.mod cmake/atm/CMakeFiles/atm.dir/micro_mg2_0.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/pmgrid.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg2_0.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/element_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metagraph_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/metis_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/spacecurve_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/vertremap_base.F90.o.provides.build [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/getinterpnetcdfdata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o built in 0.605419 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedtype_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o built in 0.472916 seconds [ 66%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cube_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o built in 0.551233 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o built in 0.256906 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o built in 0.205666 seconds [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o built in 0.307467 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/derivative_mod_base.mod cmake/atm/CMakeFiles/atm.dir/derivative_mod_base.mod.stamp GNU [ 66%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/vertremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o built in 0.333838 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/advance_clubb_core_module.mod cmake/atm/CMakeFiles/atm.dir/advance_clubb_core_module.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynharvestmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynharvestmod.mod.stamp GNU /usr/bin/cmake -E touch 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CH4Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/eos.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/getinterpnetcdfdata.mod cmake/atm/CMakeFiles/atm.dir/getinterpnetcdfdata.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate3mod.mod 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/derivative_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/element_ops.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o built in 0.195564 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnstateupdate3betrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnstateupdate3betrmod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/zoltan_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o Target 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilMoistStressMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o built in 0.267903 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/scalable_grid_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o built in 1.295606 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/geometry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o built in 0.258732 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilMoistStressMod.F90.o built in 0.443949 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/schedule_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o built in 0.560809 seconds [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowSnicarMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o built in 0.339564 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertremap_mod.mod cmake/atm/CMakeFiles/atm.dir/vertremap_mod.mod.stamp GNU [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb/clubb_api_module.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o built in 0.561327 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/getinterpnetcdfdata.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/growthrespmod.mod cmake/lnd/CMakeFiles/lnd.dir/growthrespmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cube_mod.F90.o.provides.build [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/MaintenanceRespMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o built in 0.320853 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedtype_mod.F90.o.provides.build [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o built in 0.910261 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/vertremap_mod.F90.o.provides.build [ 67%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2glcMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o built in 2.459212 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/scamMod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o built in 0.331526 seconds [ 67%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/edge_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o built in 0.496927 seconds [ 68%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VOCEmissionMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o built in 1.930257 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate1mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/derivative_mod.mod cmake/atm/CMakeFiles/atm.dir/derivative_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/element_ops.mod cmake/atm/CMakeFiles/atm.dir/element_ops.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/precisioncontrolmod.mod cmake/lnd/CMakeFiles/lnd.dir/precisioncontrolmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zoltan_mod.mod cmake/atm/CMakeFiles/atm.dir/zoltan_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNGapMortalityBeTRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scalable_grid_init_mod.mod cmake/atm/CMakeFiles/atm.dir/scalable_grid_init_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate1BeTRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/geometry_mod.mod cmake/atm/CMakeFiles/atm.dir/geometry_mod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o built in 0.942949 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate2BeTRMod.F90.o.provides.build [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/imex_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/planar_mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o built in 0.562758 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/schedule_mod.mod cmake/atm/CMakeFiles/atm.dir/schedule_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNNStateUpdate3BeTRMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o built in 1.492980 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clubb_api_module.mod cmake/atm/CMakeFiles/atm.dir/clubb_api_module.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonIsoFluxMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/geometry_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ecosystembalancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/ecosystembalancecheckmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/gapmortalitymod.mod cmake/lnd/CMakeFiles/lnd.dir/gapmortalitymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate1mod.mod.stamp GNU [ 68%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_derived_type_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate2mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate2mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogenstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogenstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusstateupdate3mod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusstateupdate3mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GapMortalityMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/GrowthRespMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate2Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusStateUpdate3Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PrecisionControlMod.F90.o.provides.build [ 68%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/ActiveLayerMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o built in 0.231745 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgridadjustmentsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgridadjustmentsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/scalable_grid_init_mod.F90.o.provides.build [ 69%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/TotalWaterAndHeatMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o built in 0.232583 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynInitColumnsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o built in 0.254794 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o built in 0.276191 seconds Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o built in 0.645507 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/schedule_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_waterfluxtype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_waterfluxtype_exchangemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/zoltan_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/derivative_mod.F90.o.provides.build [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SnowHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/element_ops.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/scammod.mod cmake/atm/CMakeFiles/atm.dir/scammod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod_base.mod cmake/atm/CMakeFiles/atm.dir/edge_mod_base.mod.stamp GNU [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mesh_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o built in 0.447530 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o built in 0.284194 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SedYieldMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o built in 0.346239 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o built in 0.615325 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/horizontal_interpolate.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o built in 0.668898 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TemperatureType.F90.o.provides.build [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/readinitial.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o built in 0.916041 seconds [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o built in 0.209164 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o built in 0.265709 seconds [ 70%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/UrbanRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o built in 0.462298 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/imex_mod.mod cmake/atm/CMakeFiles/atm.dir/imex_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynHarvestMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/planar_mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/planar_mesh_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridAdjustmentsMod.F90.o.provides.build [ 70%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/se_single_column_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o built in 0.260113 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_WaterFluxType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/scamMod.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropType.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o built in 0.293021 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/clubb/clubb_api_module.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/edge_mod_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/planar_mesh_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_derived_type_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_derived_type_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/imex_mod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_pio_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o built in 0.630098 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/edge_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o built in 0.542523 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mesh_mod.mod cmake/atm/CMakeFiles/atm.dir/mesh_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/horizontal_interpolate.mod cmake/atm/CMakeFiles/atm.dir/horizontal_interpolate.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elmfates_interfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o built in 0.191978 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/readinitial.mod cmake/atm/CMakeFiles/atm.dir/readinitial.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AnnualUpdateMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/C14DecayMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/se_single_column_mod.mod cmake/atm/CMakeFiles/atm.dir/se_single_column_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ch4mod.mod cmake/lnd/CMakeFiles/lnd.dir/ch4mod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o built in 0.958745 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/readinitial.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/se_single_column_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilmoiststressmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilmoiststressmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopyhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/canopyhydrologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mesh_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowsnicarmod.mod cmake/lnd/CMakeFiles/lnd.dir/snowsnicarmod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrifDenitrifMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_derived_type_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/maintenancerespmod.mod cmake/lnd/CMakeFiles/lnd.dir/maintenancerespmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/edge_mod.mod cmake/atm/CMakeFiles/atm.dir/edge_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrsimulation.mod cmake/lnd/CMakeFiles/lnd.dir/betrsimulation.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o built in 0.561779 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/horizontal_interpolate.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/interpolate_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2glcmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2glcmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/edge_mod.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceRadiationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o built in 0.461652 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_pio_utils.mod cmake/atm/CMakeFiles/atm.dir/cam_pio_utils.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/vocemissionmod.mod cmake/lnd/CMakeFiles/lnd.dir/vocemissionmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/bndry_mod_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o built in 0.573344 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemBalanceCheckMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_solar_parms.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o built in 0.811117 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/solar_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o built in 0.262248 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/MaintenanceRespMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/input_data_utils.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o built in 0.478707 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VOCEmissionMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_prop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o built in 0.324012 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/activelayermod.mod cmake/lnd/CMakeFiles/lnd.dir/activelayermod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/euvac.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o built in 0.348510 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o built in 0.243981 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/totalwaterandheatmod.mod cmake/lnd/CMakeFiles/lnd.dir/totalwaterandheatmod.mod.stamp GNU Target CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o built in 1.782386 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_seto2.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o built in 0.551793 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyninitcolumnsmod.mod cmake/lnd/CMakeFiles/lnd.dir/dyninitcolumnsmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tuv_inti.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/spedata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o built in 0.296533 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/emi_temperaturetype_exchangemod.mod cmake/lnd/CMakeFiles/lnd.dir/emi_temperaturetype_exchangemod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o built in 0.303902 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_initfiles.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/lnd2atmMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o built in 0.344042 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BareGroundFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o built in 0.810492 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_comp_esmf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o built in 0.262485 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_pio_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/snowhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/snowhydrologymod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/cam_grid_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o built in 0.193964 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakefluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/lakefluxesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod_base.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod_base.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o built in 0.475755 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interpolate_mod.mod cmake/atm/CMakeFiles/atm.dir/interpolate_mod.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/LakeTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o built in 0.591128 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solar_parms.mod cmake/atm/CMakeFiles/atm.dir/mo_solar_parms.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/sedyieldmod.mod cmake/lnd/CMakeFiles/lnd.dir/sedyieldmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solar_data.mod cmake/atm/CMakeFiles/atm.dir/solar_data.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowHydrologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/input_data_utils.mod cmake/atm/CMakeFiles/atm.dir/input_data_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SnowSnicarMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_prop.mod cmake/atm/CMakeFiles/atm.dir/phys_prop.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilfluxesmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jshort.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o built in 0.685490 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jlong.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o built in 1.219259 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/TotalWaterAndHeatMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_seto2.mod cmake/atm/CMakeFiles/atm.dir/mo_seto2.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanfluxesmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tuv_inti.mod cmake/atm/CMakeFiles/atm.dir/mo_tuv_inti.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/urbanradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/urbanradiationmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/spedata.mod cmake/atm/CMakeFiles/atm.dir/spedata.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o built in 0.638433 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynInitColumnsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/euvac.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_seto2.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi_data_exchange/EMI_TemperatureType_ExchangeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/shared/BeTRSimulation.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tuv_inti.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/spedata.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2glcMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/input_data_utils.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_solar_parms.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/croptype.mod cmake/lnd/CMakeFiles/lnd.dir/croptype.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elmfatesinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/elmfatesinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/solar_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_initfiles.mod cmake/atm/CMakeFiles/atm.dir/cam_initfiles.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CH4Mod.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CarbonStateUpdate1Mod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rad_solar_var.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o built in 1.182023 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_initfiles.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o built in 0.540235 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CropMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeBGCMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o built in 0.217747 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_comp_esmf.mod cmake/atm/CMakeFiles/atm.dir/atm_comp_esmf.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_prop.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/bndry_mod_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/interpolate_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o built in 0.205657 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_grid_support.mod cmake/atm/CMakeFiles/atm.dir/cam_grid_support.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/DecompCascadeCNMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/bndry_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o built in 0.512078 seconds Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o built in 0.198313 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnnitrifdenitrifmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnnitrifdenitrifmod.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/ncdio_atm.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mag_parms.mod cmake/atm/CMakeFiles/atm.dir/mag_parms.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SurfaceAlbedoMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o built in 0.760397 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jshort.mod cmake/atm/CMakeFiles/atm.dir/mo_jshort.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. 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/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/NitrogenDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o built in 0.711617 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_jlong.mod cmake/atm/CMakeFiles/atm.dir/mo_jlong.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o built in 0.494036 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o built in 0.226635 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/efield.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o built in 0.469808 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mag_parms.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfaceradiationmod.mod cmake/lnd/CMakeFiles/lnd.dir/surfaceradiationmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jlong.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/RootDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o built in 0.360676 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jshort.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rad_solar_var.mod cmake/atm/CMakeFiles/atm.dir/rad_solar_var.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_esmf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rad_solar_var.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/cam_grid_support.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_support.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o built in 0.391663 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/bndry_mod.mod cmake/atm/CMakeFiles/atm.dir/bndry_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropType.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ncdio_atm.mod cmake/atm/CMakeFiles/atm.dir/ncdio_atm.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyFluxLimitMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o built in 1.318181 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setz.mod cmake/atm/CMakeFiles/atm.dir/mo_setz.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/efield.mod cmake/atm/CMakeFiles/atm.dir/efield.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrifDenitrifMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setz.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/mass_matrix_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o built in 0.667124 seconds [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/VegStructUpdateMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o built in 0.664286 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_theta.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o built in 0.222688 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/ActiveLayerMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/ncdio_atm.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o built in 2.143599 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/bndry_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeochemmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeochemmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_support.mod cmake/atm/CMakeFiles/atm.dir/cam_history_support.mod.stamp GNU [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dyncropFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o built in 0.304938 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/dof_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o built in 0.289836 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd2atmmod.mod cmake/lnd/CMakeFiles/lnd.dir/lnd2atmmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/global_norms_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o built in 0.249644 seconds [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/viscosity_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o built in 0.348745 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/baregroundfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/baregroundfluxesmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeFluxesMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lakehydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/lakehydrologymod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/laketemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/laketemperaturemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SedYieldMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilFluxesMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o built in 0.330398 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceRadiationMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanFluxesMod.F90.o.provides.build [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/hycoef.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/UrbanRadiationMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeochemMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elmfates_interfaceMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/lnd2atmMod.F90.o.provides.build [ 71%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/AllocationMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o built in 0.502017 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/carbonstateupdate1mod.mod cmake/lnd/CMakeFiles/lnd.dir/carbonstateupdate1mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/efield.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cropmod.mod cmake/lnd/CMakeFiles/lnd.dir/cropmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mass_matrix_mod.mod cmake/atm/CMakeFiles/atm.dir/mass_matrix_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompcascadebgcmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompcascadebgcmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_theta.mod cmake/atm/CMakeFiles/atm.dir/viscosity_theta.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/decompcascadecnmod.mod cmake/lnd/CMakeFiles/lnd.dir/decompcascadecnmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_support.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o built in 0.450345 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/surfacealbedomod.mod cmake/lnd/CMakeFiles/lnd.dir/surfacealbedomod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/nitrogendynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/nitrogendynamicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/mass_matrix_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/betrsimulationalm.mod cmake/lnd/CMakeFiles/lnd.dir/betrsimulationalm.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o built in 0.314058 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/rootdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/rootdynamicsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_theta.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CarbonStateUpdate1Mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CropMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dof_mod.mod cmake/atm/CMakeFiles/atm.dir/dof_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/global_norms_mod.mod cmake/atm/CMakeFiles/atm.dir/global_norms_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_base.mod cmake/atm/CMakeFiles/atm.dir/viscosity_base.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeBGCMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/DecompCascadeCNMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hycoef.mod cmake/atm/CMakeFiles/atm.dir/hycoef.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologyfluxlimitmod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologyfluxlimitmod.mod.stamp GNU [ 71%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/cg_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_si_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/dof_mod.F90.o.provides.build [ 72%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o built in 0.302270 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/NitrogenDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/global_norms_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyFluxLimitMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/viscosity_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/RootDynamicsMod.F90.o.provides.build [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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cmake/lnd/vegstructupdatemod.mod cmake/lnd/CMakeFiles/lnd.dir/vegstructupdatemod.mod.stamp GNU [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils/plevs0.F90 -o CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/pdelb0.F90.o built in 0.206456 seconds [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/viscosity_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/utils/plevs0.F90.o built in 0.211128 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynconsbiogeophysmod.mod cmake/lnd/CMakeFiles/lnd.dir/dynconsbiogeophysmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cg_mod.mod cmake/atm/CMakeFiles/atm.dir/cg_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dyncropfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dyncropfilemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_si_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_si_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BareGroundFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/utils/hycoef.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/cg_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/LakeTemperatureMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_si_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SurfaceAlbedoMod.F90.o.provides.build [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/solver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o built in 0.202419 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynConsBiogeophysMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/viscosity_mod.mod cmake/atm/CMakeFiles/atm.dir/viscosity_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dyncropFileMod.F90.o.provides.build [ 72%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_advection_base.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o built in 0.350962 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/sbetr/src/driver/alm/BeTRSimulationALM.F90.o.provides.build [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/model_init_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o built in 0.559679 seconds Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o built in 0.260556 seconds [ 73%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNPhenologyBeTRMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o [ 73%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_state_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o built in 1.599562 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/solver_mod.mod cmake/atm/CMakeFiles/atm.dir/solver_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/VegStructUpdateMod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/unit_tests_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o built in 0.815608 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/phenologymod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/viscosity_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhenologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_base.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_base.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/model_init_mod.mod cmake/atm/CMakeFiles/atm.dir/model_init_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_state_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_state_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/sl_advection.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o built in 0.779166 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_advection_base.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/solver_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/unit_tests_mod.mod cmake/atm/CMakeFiles/atm.dir/unit_tests_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/model_init_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_state_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o built in 1.568065 seconds [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advance_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o built in 0.670988 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnphenologybetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnphenologybetrmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/unit_tests_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNPhenologyBeTRMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sl_advection.mod cmake/atm/CMakeFiles/atm.dir/sl_advection.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share/prim_advection_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o built in 0.212672 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/sl_advection.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advection_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advection_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advection_mod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o built in 4.011823 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/allocationmod.mod cmake/lnd/CMakeFiles/lnd.dir/allocationmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/AllocationMod.F90.o.provides.build [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNAllocationBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/PhotosynthesisMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o built in 1.439732 seconds [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SoilLittDecompMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o built in 2.400309 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_advance_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_advance_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_mod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l 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/usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnallocationbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnallocationbetrmod.mod.stamp GNU [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/prim_implicit_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o built in 0.194674 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNAllocationBetrMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/share/prim_advance_mod.F90.o.provides.build [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o built in 1.119619 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_implicit_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_implicit_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soillittdecompmod.mod cmake/lnd/CMakeFiles/lnd.dir/soillittdecompmod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o built in 0.726408 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_implicit_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SoilLittDecompMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_base.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_base.mod.stamp GNU [ 74%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_interface_funcsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o [ 74%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/prim_driver_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o built in 2.074623 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/gllfvremap_util_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o built in 0.535089 seconds Target CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o built in 0.198017 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/photosynthesismod.mod cmake/lnd/CMakeFiles/lnd.dir/photosynthesismod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/prim_driver_base.F90.o.provides.build [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyFluxesMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/readParamsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o built in 0.448249 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_grid.mod cmake/atm/CMakeFiles/atm.dir/dyn_grid.mod.stamp GNU [ 75%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/CanopyTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o built in 0.716683 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prim_driver_mod.mod cmake/atm/CMakeFiles/atm.dir/prim_driver_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_grid.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gllfvremap_util_mod.mod cmake/atm/CMakeFiles/atm.dir/gllfvremap_util_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/theta-l/prim_driver_mod.F90.o.provides.build [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_grid.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o built in 0.635437 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_data_flux.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o built in 0.302787 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/PhotosynthesisMod.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o built in 1.512390 seconds [ 75%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ref_pres.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME 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CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o built in 1.990353 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/readparamsmod.mod cmake/lnd/CMakeFiles/lnd.dir/readparamsmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopytemperaturemod.mod cmake/lnd/CMakeFiles/lnd.dir/canopytemperaturemod.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o built in 0.217737 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_interface_funcsmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_interface_funcsmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/readParamsMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/canopyfluxesmod.mod cmake/lnd/CMakeFiles/lnd.dir/canopyfluxesmod.mod.stamp GNU [ 76%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose_test_mod.F90 -o CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyTemperatureMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_interface_funcsMod.F90.o.provides.build [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/controlMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o built in 0.395993 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/CanopyFluxesMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/gllfvremap_util_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/co2_data_flux.mod cmake/atm/CMakeFiles/atm.dir/co2_data_flux.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ref_pres.mod cmake/atm/CMakeFiles/atm.dir/ref_pres.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/namelist_mod.mod cmake/atm/CMakeFiles/atm.dir/namelist_mod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers_suite.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o Target CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o built in 0.274434 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radae.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o built in 1.655285 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_data_flux.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ref_pres.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/compose_test_mod.mod cmake/atm/CMakeFiles/atm.dir/compose_test_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/namelist_mod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o built in 0.251963 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_grid.mod cmake/atm/CMakeFiles/atm.dir/phys_grid.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers_suite.mod cmake/atm/CMakeFiles/atm.dir/tracers_suite.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dyn_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_grid.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers_suite.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/homme/src/share/compose_test_mod.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/dadadj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o built in 0.698714 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/controlmod.mod cmake/lnd/CMakeFiles/lnd.dir/controlmod.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/ndepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/dadadj.F90.o built in 0.229848 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_instMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o built in 0.346824 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynpftFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o built in 0.368326 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qneg4.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o built in 0.296462 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qqflx_fixer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o built in 1.094474 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qneg4.F90.o built in 0.217381 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/pdepStreamMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/restFileMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qqflx_fixer.F90.o built in 0.216866 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/intp_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/intp_util.F90.o built in 0.206109 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history_buffers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o built in 0.359863 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_import_export.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o built in 1.116605 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_types.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history_buffers.F90.o built in 0.332421 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/controlMod.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/interp_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o built in 0.499581 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/sat_hist.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o built in 1.191742 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ndepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/ndepstreammod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_instmod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_instmod.mod.stamp GNU [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/SatellitePhenologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/interp_mod.F90.o built in 0.620599 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynpftfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/dynpftfilemod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/soil_erod_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/sat_hist.F90.o built in 0.634298 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o built in 0.238991 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/pdepstreammod.mod cmake/lnd/CMakeFiles/lnd.dir/pdepstreammod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/polar_avg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_types.F90.o built in 1.173417 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/restfilemod.mod cmake/lnd/CMakeFiles/lnd.dir/restfilemod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_synoz.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o built in 0.574146 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sethet.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/polar_avg.F90.o built in 0.270140 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_import_export.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_import_export.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_msis_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_synoz.F90.o built in 0.278665 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynpftFileMod.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_snoe.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_msis_ubc.F90.o built in 0.254635 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o built in 0.748251 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dyn_comp.mod cmake/atm/CMakeFiles/atm.dir/dyn_comp.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_instMod.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug_util.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o built in 0.299569 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/ndepStreamMod.F90.o.provides.build [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hk_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o built in 0.152793 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/pdepStreamMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/restFileMod.F90.o.provides.build [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/FireMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o built in 0.730061 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/PhosphorusDynamicsMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug_util.F90.o built in 0.218269 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/satellitephenologymod.mod cmake/lnd/CMakeFiles/lnd.dir/satellitephenologymod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/debug_info.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/debug_info.F90.o built in 0.220650 seconds [ 77%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid/dynSubgridDriverMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hk_conv.F90.o built in 0.490104 seconds [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat.F90.o built in 0.478057 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radae.mod cmake/atm/CMakeFiles/atm.dir/radae.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/gravity_waves_sources.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o built in 0.908982 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o built in 0.585902 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dyn_comp.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radae.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelinterfacemod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelinterfacemod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history_buffers.mod cmake/atm/CMakeFiles/atm.dir/cam_history_buffers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_types.mod cmake/atm/CMakeFiles/atm.dir/physics_types.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/externalmodelvsfmmod.mod cmake/lnd/CMakeFiles/lnd.dir/externalmodelvsfmmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/interp_mod.mod cmake/atm/CMakeFiles/atm.dir/interp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/emi/ExternalModelInterfaceMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sat_hist.mod cmake/atm/CMakeFiles/atm.dir/sat_hist.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/phosphorusdynamicsmod.mod cmake/lnd/CMakeFiles/lnd.dir/phosphorusdynamicsmod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/soil_erod_mod.mod cmake/atm/CMakeFiles/atm.dir/soil_erod_mod.mod.stamp GNU cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/subcol_utils.F90 -o CMakeFiles/atm.dir/subcol_utils.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/SatellitePhenologyMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/polar_avg.mod cmake/atm/CMakeFiles/atm.dir/polar_avg.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/dynsubgriddrivermod.mod cmake/lnd/CMakeFiles/lnd.dir/dynsubgriddrivermod.mod.stamp GNU [ 77%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/dust_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/gravity_waves_sources.F90.o built in 0.336557 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilTemperatureMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o built in 0.224235 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilWaterMovementMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o built in 2.152058 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_synoz.mod cmake/atm/CMakeFiles/atm.dir/mo_synoz.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/dyn_subgrid/dynSubgridDriverMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/boundarydata.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o built in 0.901504 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sethet.mod cmake/atm/CMakeFiles/atm.dir/mo_sethet.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/external_models/emi/src/em/vsfm/ExternalModelVSFMMod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_msis_ubc.mod cmake/atm/CMakeFiles/atm.dir/mo_msis_ubc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/firemod.mod cmake/lnd/CMakeFiles/lnd.dir/firemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_snoe.mod cmake/atm/CMakeFiles/atm.dir/mo_snoe.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/PhosphorusDynamicsMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sethet.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilwatermovementmod.mod cmake/lnd/CMakeFiles/lnd.dir/soilwatermovementmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_snoe.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem/CNEcosystemDynBetrMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o Target CMakeFiles/atm.dir/subcol_utils.F90.o built in 1.442948 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python 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[ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/majorsp_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o built in 0.201873 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/debug_info.mod cmake/atm/CMakeFiles/atm.dir/debug_info.mod.stamp GNU [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rayleigh_friction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o built in 0.223723 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldwat.mod cmake/atm/CMakeFiles/atm.dir/cldwat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gravity_waves_sources.mod 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_gmean.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o built in 1.305506 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_utils.mod cmake/atm/CMakeFiles/atm.dir/subcol_utils.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/FireMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/soil_erod_mod.F90.o.provides.build [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/SoilHydrologyMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o built in 2.600678 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dust_model.mod cmake/atm/CMakeFiles/atm.dir/dust_model.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilWaterMovementMod.F90.o.provides.build [ 78%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_fstrat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o built in 0.316924 seconds [ 78%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/init_hydrology.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/init_hydrology.F90.o built in 0.199111 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/boundarydata.mod cmake/atm/CMakeFiles/atm.dir/boundarydata.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/cnecosystemdynbetrmod.mod cmake/lnd/CMakeFiles/lnd.dir/cnecosystemdynbetrmod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/majorsp_diffusion.mod cmake/atm/CMakeFiles/atm.dir/majorsp_diffusion.mod.stamp GNU 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-DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/wv_sat_scream.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o built in 1.840140 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rayleigh_friction.mod cmake/atm/CMakeFiles/atm.dir/rayleigh_friction.mod.stamp GNU [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/pkg_cld_sediment.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o built in 0.544360 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/CNEcosystemDynBetrMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/boundarydata.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/ecosystemdynmod.mod cmake/lnd/CMakeFiles/lnd.dir/ecosystemdynmod.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/majorsp_diffusion.F90.o.provides.build /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilTemperatureMod.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o built in 0.216627 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/module_perturb.mod cmake/atm/CMakeFiles/atm.dir/module_perturb.mod.stamp GNU /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeochem/EcosystemDynMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rayleigh_friction.F90.o.provides.build [ 79%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_initializeMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/subcol_utils.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_gmean.mod cmake/atm/CMakeFiles/atm.dir/phys_gmean.mod.stamp GNU [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm/physics_buffer.F90 -o CMakeFiles/atm.dir/physics_buffer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o built in 0.331973 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/dust_model.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_fstrat.mod cmake/atm/CMakeFiles/atm.dir/mo_fstrat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wv_sat_scream.mod cmake/atm/CMakeFiles/atm.dir/wv_sat_scream.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/pkg_cld_sediment.mod cmake/atm/CMakeFiles/atm.dir/pkg_cld_sediment.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/module_perturb.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_gmean.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/pkg_cld_sediment.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/wv_sat_scream.F90.o.provides.build [ 79%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/mo_flbc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o built in 1.146123 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_fstrat.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/soilhydrologymod.mod cmake/lnd/CMakeFiles/lnd.dir/soilhydrologymod.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3.F90 -o 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o built in 0.736236 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_flbc.mod cmake/atm/CMakeFiles/atm.dir/mo_flbc.mod.stamp GNU [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes 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-I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/HydrologyNoDrainageMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o built in 1.634707 seconds [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/chem_surfvals.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o built in 0.312101 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/SoilHydrologyMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/mo_flbc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_initializemod.mod cmake/lnd/CMakeFiles/lnd.dir/elm_initializemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chem_surfvals.mod cmake/atm/CMakeFiles/atm.dir/chem_surfvals.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologydrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologydrainagemod.mod.stamp GNU [ 80%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_history.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o Target CMakeFiles/atm.dir/physics_buffer.F90.o built in 2.472374 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_initializeMod.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/chem_surfvals.F90.o.provides.build Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o built in 1.009912 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyDrainageMod.F90.o.provides.build [ 80%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys/BalanceCheckMod.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_buffer.mod cmake/atm/CMakeFiles/atm.dir/physics_buffer.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/hydrologynodrainagemod.mod cmake/lnd/CMakeFiles/lnd.dir/hydrologynodrainagemod.mod.stamp GNU [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o built in 0.221176 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/HydrologyNoDrainageMod.F90.o.provides.build [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o built in 2.735911 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/short_lived_species.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o built in 0.251959 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o built in 0.516656 seconds [ 81%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/read_volc_radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radheat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o built in 0.270694 seconds [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_aero_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o built in 0.438260 seconds Target CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o built in 1.323182 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/balancecheckmod.mod cmake/lnd/CMakeFiles/lnd.dir/balancecheckmod.mod.stamp GNU [ 82%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ghg_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/biogeophys/BalanceCheckMod.F90.o.provides.build [ 82%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/main/elm_driver.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o built in 0.275932 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iondrag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o built in 0.682429 seconds [ 83%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ionosphere.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o built in 0.231994 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_tstcp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o built in 0.231439 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3.mod cmake/atm/CMakeFiles/atm.dir/micro_p3.mod.stamp GNU [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/qbo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o built in 0.366494 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/physics_buffer.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/wetdep.mod cmake/atm/CMakeFiles/atm.dir/wetdep.mod.stamp GNU [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_rename.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o built in 0.215643 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/short_lived_species.mod cmake/atm/CMakeFiles/atm.dir/short_lived_species.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o built in 2.924961 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/read_volc_radiation_data.mod cmake/atm/CMakeFiles/atm.dir/read_volc_radiation_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radheat.mod cmake/atm/CMakeFiles/atm.dir/radheat.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_aero_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_aero_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ghg_data.mod cmake/atm/CMakeFiles/atm.dir/ghg_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/iondrag.mod cmake/atm/CMakeFiles/atm.dir/iondrag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ionosphere.mod cmake/atm/CMakeFiles/atm.dir/ionosphere.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_tstcp.mod cmake/atm/CMakeFiles/atm.dir/subcol_tstcp.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/qbo.mod cmake/atm/CMakeFiles/atm.dir/qbo.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_aero_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ghg_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iondrag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ionosphere.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/qbo.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radheat.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_tstcp.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_history.mod cmake/atm/CMakeFiles/atm.dir/cam_history.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/wetdep.F90.o.provides.build [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/clybry_fam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airglow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_rename.F90.o built in 0.321889 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_airplane.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o built in 0.238637 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_cph.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o built in 0.320041 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_exp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o built in 0.357726 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aero_settling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o built in 0.226251 seconds [ 84%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_jeuv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o built in 0.252146 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_ghg_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o built in 0.636817 seconds [ 85%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o built in 2.187526 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/elm_driver.mod cmake/lnd/CMakeFiles/lnd.dir/elm_driver.mod.stamp GNU [ 85%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_esmf.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o built in 0.490112 seconds [ 85%] Building Fortran object cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/lnd/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.elm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/dyn_subgrid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeophys -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/biogeochem -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/fire -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/fates/parteh -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/dtypes -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/thermal -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/mpp/src/mpp/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/constants -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/base -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/betr -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/fates -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/ptm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/stub -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/em/vsfm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_definition -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_exchange -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/emi/src/emi_data_types -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_core -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_dtype -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_bgc -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_grid -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_para -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_main -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_math -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_rxns -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/betr/betr_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/shared -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/driver/alm -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/app_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/bgcfarm_util -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/external_models/sbetr/src/Applications/soil-farm/CENT_ECACNP -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/utils -I/home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/elm/src/cpl/lnd_comp_mct.F90 -o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o built in 0.290911 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/main/elm_driver.F90.o.provides.build [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_neu_wetdep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o built in 0.156915 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o built in 0.431821 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_comp_esmf.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_comp_esmf.mod.stamp GNU [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/rate_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o built in 0.239745 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o.provides.build [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tropopause.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o built in 0.792153 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/short_lived_species.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/read_volc_radiation_data.F90.o.provides.build [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ebert_curry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o built in 0.907852 seconds [ 86%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/slingo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tropopause.F90.o built in 0.470972 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aoa_tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o Target CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o built in 1.266787 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/lnd/lnd_comp_mct.mod cmake/lnd/CMakeFiles/lnd.dir/lnd_comp_mct.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/ebert_curry.F90.o built in 0.331384 seconds [ 87%] Linking CXX static library liblnd.a cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd && /usr/bin/cmake -P CMakeFiles/lnd.dir/cmake_clean_target.cmake [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam3_ozone_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o cd 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CMakeFiles/lnd.dir/__/__/elm/src/cpl/elm_cpl_indices.F90.o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_esmf.F90.o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_import_export.F90.o CMakeFiles/lnd.dir/ncdio_pio.F90.o CMakeFiles/lnd.dir/dynVarMod.F90.o CMakeFiles/lnd.dir/dynVarTimeInterpMod.F90.o CMakeFiles/lnd.dir/dynVarTimeUninterpMod.F90.o CMakeFiles/lnd.dir/restUtilMod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/slingo.F90.o built in 0.320837 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/constituent_burden.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o built in 0.318726 seconds [ 87%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tidal_diag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o Target liblnd.a built in 0.134953 seconds python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/bin/ranlib liblnd.a Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o built in 0.295610 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/constituent_burden.F90.o built in 0.243438 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_fraction.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o Target liblnd.a built in 0.136494 seconds /usr/bin/cmake -E touch cmake/lnd/CMakeFiles/lnd.dir/__/__/elm/src/cpl/lnd_comp_mct.F90.o.provides.build [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_cover_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 88%] Built target lnd [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/conv_water.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tidal_diag.F90.o built in 0.344876 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physics_update_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o built in 0.248441 seconds [ 88%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/uwshcu.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/conv_water.F90.o built in 0.334068 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o built in 0.391960 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nudging.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/sslt_rebin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physics_update_mod.F90.o built in 0.268966 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tracers.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/sslt_rebin.F90.o built in 0.288595 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/eddy_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/eddy_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tracers.F90.o built in 0.291599 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_defaults.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o built in 0.223852 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/history_scam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o built in 0.260180 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_history.F90.o.provides.build [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/forecast.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nudging.F90.o built in 1.164145 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/forecast.F90.o built in 0.329320 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/co2_cycle.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o built in 0.485185 seconds [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/rad_constituents.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o built in 0.360635 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_rename.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_rename.mod.stamp GNU [ 89%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se 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-DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/cfc11star.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o built in 0.474340 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_apex.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o built in 0.298136 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/clybry_fam.mod cmake/atm/CMakeFiles/atm.dir/clybry_fam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_airglow.mod cmake/atm/CMakeFiles/atm.dir/mo_airglow.mod.stamp GNU 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cmake/atm/CMakeFiles/atm.dir/mo_neu_wetdep.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sad.mod cmake/atm/CMakeFiles/atm.dir/mo_sad.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rate_diags.mod cmake/atm/CMakeFiles/atm.dir/rate_diags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tropopause.mod cmake/atm/CMakeFiles/atm.dir/tropopause.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/clybry_fam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aero_settling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airglow.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_airplane.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_cph.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o built in 0.971861 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_exp_sol.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_ghg_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_jeuv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_neu_wetdep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sad.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/rate_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/pp_trop_mam3/mo_imp_sol.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ebert_curry.mod cmake/atm/CMakeFiles/atm.dir/ebert_curry.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/slingo.mod cmake/atm/CMakeFiles/atm.dir/slingo.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aoa_tracers.mod cmake/atm/CMakeFiles/atm.dir/aoa_tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam3_ozone_data.mod cmake/atm/CMakeFiles/atm.dir/cam3_ozone_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/constituent_burden.mod cmake/atm/CMakeFiles/atm.dir/constituent_burden.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tidal_diag.mod cmake/atm/CMakeFiles/atm.dir/tidal_diag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_fraction.mod cmake/atm/CMakeFiles/atm.dir/cloud_fraction.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_cover_diags.mod cmake/atm/CMakeFiles/atm.dir/cloud_cover_diags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/conv_water.mod cmake/atm/CMakeFiles/atm.dir/conv_water.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physics_update_mod.mod cmake/atm/CMakeFiles/atm.dir/physics_update_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nudging.mod cmake/atm/CMakeFiles/atm.dir/nudging.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/sslt_rebin.mod cmake/atm/CMakeFiles/atm.dir/sslt_rebin.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracers.mod cmake/atm/CMakeFiles/atm.dir/tracers.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/eddy_diff.mod cmake/atm/CMakeFiles/atm.dir/eddy_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_defaults.mod cmake/atm/CMakeFiles/atm.dir/history_defaults.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/history_scam.mod cmake/atm/CMakeFiles/atm.dir/history_scam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aoa_tracers.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam3_ozone_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_cover_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_fraction.F90.o.provides.build /usr/bin/cmake -E touch 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-DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam 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-ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o built in 0.437760 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_calcsize.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o built in 0.545546 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/output_aerocom_aie.mod cmake/atm/CMakeFiles/atm.dir/output_aerocom_aie.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_wateruptake.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o built in 1.220346 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/sox_cldaero_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cfc11star.mod cmake/atm/CMakeFiles/atm.dir/cfc11star.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_apex.mod cmake/atm/CMakeFiles/atm.dir/mo_apex.mod.stamp GNU [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chm_diags.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o built in 0.584456 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_solarproton.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o built in 0.937043 seconds [ 90%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_rates.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o built in 0.233080 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/exbdrift.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o built in 0.321893 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_apex.F90.o.provides.build [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/oldcloud.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o built in 0.346403 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldfrc2m.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o built in 0.854028 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zm_conv.mod cmake/atm/CMakeFiles/atm.dir/zm_conv.mod.stamp GNU [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hetfrz_classnuc_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o built in 0.347582 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o built in 0.310629 seconds [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop_bam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o [ 91%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/nucleate_ice_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o built in 0.366014 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_defaults.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/history_scam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/co2_cycle.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/output_aerocom_aie.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/rad_constituents.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o built in 0.413932 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv.F90.o.provides.build [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol/mo_setsox.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o [ 92%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/camsrfexch.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o built in 0.716774 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs 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/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/tracer_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o built in 0.590839 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_gasaerexch.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_gasaerexch.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_newnuc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_newnuc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_calcsize.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_calcsize.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/ndrop.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o built in 0.857696 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_wateruptake.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_wateruptake.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_gasaerexch.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_newnuc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/cfc11star.F90.o.provides.build [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_aurora.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o built in 1.386781 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chm_diags.mod cmake/atm/CMakeFiles/atm.dir/mo_chm_diags.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_solarproton.mod cmake/atm/CMakeFiles/atm.dir/mo_solarproton.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_rates.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_rates.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o built in 7.328480 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/exbdrift.mod cmake/atm/CMakeFiles/atm.dir/exbdrift.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chm_diags.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_solarproton.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_rates.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_calcsize.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_wateruptake.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/oldcloud.mod cmake/atm/CMakeFiles/atm.dir/oldcloud.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/modal_aer_opt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldfrc2m.mod cmake/atm/CMakeFiles/atm.dir/cldfrc2m.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/uwshcu.mod cmake/atm/CMakeFiles/atm.dir/uwshcu.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/zm_conv_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o built in 1.005825 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hetfrz_classnuc_cam.mod cmake/atm/CMakeFiles/atm.dir/hetfrz_classnuc_cam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop_bam.mod cmake/atm/CMakeFiles/atm.dir/ndrop_bam.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/nucleate_ice_cam.mod cmake/atm/CMakeFiles/atm.dir/nucleate_ice_cam.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o built in 0.747057 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldfrc2m.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hetfrz_classnuc_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop_bam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/nucleate_ice_cam.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/uwshcu.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/oldcloud.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setsox.mod cmake/atm/CMakeFiles/atm.dir/mo_setsox.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/camsrfexch.mod cmake/atm/CMakeFiles/atm.dir/camsrfexch.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_data.mod cmake/atm/CMakeFiles/atm.dir/tracer_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/ndrop.mod cmake/atm/CMakeFiles/atm.dir/ndrop.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_coag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/seasalt_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o built in 0.406168 seconds Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o built in 0.553544 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/linoz_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_cnst.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o built in 0.740927 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_aurora.mod cmake/atm/CMakeFiles/atm.dir/mo_aurora.mod.stamp GNU [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_extfrc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o built in 0.606575 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_lightning.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o built in 0.358605 seconds [ 93%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/tracer_srcs.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o built in 0.440369 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_strato_sad.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o built in 0.403643 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o built in 0.361646 seconds cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_sulf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_srf_emissions.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o built in 0.383496 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_tgcm_ubc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o built in 0.390656 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/exbdrift.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_aurora.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o built in 0.291759 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aircraft_emit.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o built in 0.389165 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ghg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o built in 0.304450 seconds [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_ozone.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o built in 0.410760 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o built in 0.527539 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/tracer_data.F90.o.provides.build [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/prescribed_volcaero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aer_opt.mod cmake/atm/CMakeFiles/atm.dir/modal_aer_opt.mod.stamp GNU [ 94%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/cloud_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o built in 0.394161 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cospsimulator_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o built in 0.708160 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/radiation_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o built in 0.244843 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/rrtmg_state.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o built in 0.431281 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/check_energy.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o built in 0.483608 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/phys_debug.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o built in 0.387647 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cldwat2m_macro.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o built in 0.359219 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_shallow.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o built in 0.269275 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/zm_conv_intr.mod cmake/atm/CMakeFiles/atm.dir/zm_conv_intr.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/gw_drag.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o built in 0.726779 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_aero.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o built in 0.710985 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/camsrfexch.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl/atm_import_export.F90 -o CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o built in 0.583939 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/modal_aer_opt.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/ndrop.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/zm_conv_intr.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o built in 0.976921 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/aerosol/mo_setsox.F90.o.provides.build [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/iop_surf.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/modal_aero_deposition.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o built in 0.341687 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_drydep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/iop_surf.F90.o built in 0.213997 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_coag.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_coag.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_convproc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o built in 0.248337 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/seasalt_model.mod cmake/atm/CMakeFiles/atm.dir/seasalt_model.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_coag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/seasalt_model.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/linoz_data.mod cmake/atm/CMakeFiles/atm.dir/linoz_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_cnst.mod cmake/atm/CMakeFiles/atm.dir/tracer_cnst.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_extfrc.mod cmake/atm/CMakeFiles/atm.dir/mo_extfrc.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_lightning.mod cmake/atm/CMakeFiles/atm.dir/mo_lightning.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setaer.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o built in 0.431391 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/tracer_srcs.mod cmake/atm/CMakeFiles/atm.dir/tracer_srcs.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_strato_sad.mod cmake/atm/CMakeFiles/atm.dir/mo_strato_sad.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_sulf.mod cmake/atm/CMakeFiles/atm.dir/mo_sulf.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_srf_emissions.mod cmake/atm/CMakeFiles/atm.dir/mo_srf_emissions.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_tgcm_ubc.mod cmake/atm/CMakeFiles/atm.dir/mo_tgcm_ubc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/linoz_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_extfrc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_lightning.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_srf_emissions.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_strato_sad.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_sulf.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_tgcm_ubc.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_cnst.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/tracer_srcs.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aircraft_emit.mod cmake/atm/CMakeFiles/atm.dir/aircraft_emit.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_aero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_aero.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ghg.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ghg.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_ozone.mod cmake/atm/CMakeFiles/atm.dir/prescribed_ozone.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/prescribed_volcaero.mod cmake/atm/CMakeFiles/atm.dir/prescribed_volcaero.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/aer_rad_props.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o built in 2.630522 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_rad_props.mod cmake/atm/CMakeFiles/atm.dir/cloud_rad_props.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cospsimulator_intr.mod cmake/atm/CMakeFiles/atm.dir/cospsimulator_intr.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radiation_data.mod cmake/atm/CMakeFiles/atm.dir/radiation_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/rrtmg_state.mod cmake/atm/CMakeFiles/atm.dir/rrtmg_state.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/check_energy.mod cmake/atm/CMakeFiles/atm.dir/check_energy.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/phys_debug.mod cmake/atm/CMakeFiles/atm.dir/phys_debug.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cldwat2m_macro.mod cmake/atm/CMakeFiles/atm.dir/cldwat2m_macro.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_shallow.mod cmake/atm/CMakeFiles/atm.dir/convect_shallow.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/convect_deep.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o built in 1.572143 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/flux_avg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o built in 1.448906 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/gw_drag.mod cmake/atm/CMakeFiles/atm.dir/gw_drag.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_aero.mod cmake/atm/CMakeFiles/atm.dir/microp_aero.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o built in 0.671092 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/stratiform.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/dp_coupling.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o built in 0.355805 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/atm_import_export.mod cmake/atm/CMakeFiles/atm.dir/atm_import_export.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/check_energy.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cldwat2m_macro.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_shallow.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cospsimulator_intr.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/gw_drag.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/phys_debug.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/radiation_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/cloud_rad_props.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/rrtmg_state.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o built in 0.293910 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_deposition.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_deposition.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/tphysidl.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_drydep.mod cmake/atm/CMakeFiles/atm.dir/mo_drydep.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/tphysidl.F90.o built in 0.258899 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_convproc.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_convproc.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chlorine_loading_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o built in 0.550811 seconds [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setinv.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o built in 0.760291 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setaer.mod cmake/atm/CMakeFiles/atm.dir/mo_setaer.mod.stamp GNU [ 95%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_setext.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o built in 0.291869 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/upper_bc.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o built in 0.282690 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_drydep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setaer.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aircraft_emit.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/modal_aero_deposition.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_aero.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ghg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_ozone.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/prescribed_volcaero.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aer_rad_props.mod cmake/atm/CMakeFiles/atm.dir/aer_rad_props.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radlw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o built in 0.280216 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o built in 0.330171 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radsw.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/hb_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o built in 0.437292 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o built in 1.244624 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/convect_deep.mod cmake/atm/CMakeFiles/atm.dir/convect_deep.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o built in 0.300330 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/macrop_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/flux_avg.mod cmake/atm/CMakeFiles/atm.dir/flux_avg.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stratiform.mod cmake/atm/CMakeFiles/atm.dir/stratiform.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/dp_coupling.mod cmake/atm/CMakeFiles/atm.dir/dp_coupling.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_import_export.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/aer_rad_props.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/convect_deep.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/flux_avg.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/stratiform.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_amicphys.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_amicphys.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_convproc.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils/aerodep_flx.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chlorine_loading_data.mod cmake/atm/CMakeFiles/atm.dir/chlorine_loading_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setinv.mod cmake/atm/CMakeFiles/atm.dir/mo_setinv.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photoin.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o built in 0.388864 seconds Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o built in 0.345619 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_setext.mod cmake/atm/CMakeFiles/atm.dir/mo_setext.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/upper_bc.mod cmake/atm/CMakeFiles/atm.dir/upper_bc.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chlorine_loading_data.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setext.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_setinv.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/upper_bc.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radlw.mod cmake/atm/CMakeFiles/atm.dir/radlw.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/hb_diff.mod cmake/atm/CMakeFiles/atm.dir/hb_diff.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/molec_diff.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/stepon.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o built in 1.009473 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/dp_coupling.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/hb_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radlw.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aerodep_flx.mod cmake/atm/CMakeFiles/atm.dir/aerodep_flx.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_amicphys.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/lin_strat_chem.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o built in 0.864611 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o built in 0.435521 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photoin.mod cmake/atm/CMakeFiles/atm.dir/mo_photoin.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/utils/aerodep_flx.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radsw.mod cmake/atm/CMakeFiles/atm.dir/radsw.mod.stamp GNU Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o built in 0.472330 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/macrop_driver.mod cmake/atm/CMakeFiles/atm.dir/macrop_driver.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/molec_diff.mod cmake/atm/CMakeFiles/atm.dir/molec_diff.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/stepon.mod cmake/atm/CMakeFiles/atm.dir/stepon.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/molec_diff.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radsw.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_photo.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o built in 0.224208 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photoin.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o built in 0.369456 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/radiation.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o built in 0.535459 seconds [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/vertical_diffusion.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:87:67: type(clubb_config_flags_type), public, save :: clubb_config_flags 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:88:60: real(r8), dimension(nparams), public, save :: clubb_params ! Adjustable CLUBB parameters (C1, C2 ...) 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:49:60: stats_rad_zm(:), & ! stats_rad_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:48:60: stats_rad_zt(:), & ! stats_rad_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:50:57: stats_sfc(:) ! stats_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:47:56: stats_zm(:), & ! stats_zm grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/clubb_intr.F90:46:56: type (stats), allocatable, target, save :: stats_zt(:), & ! stats_zt grid 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o built in 0.805615 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/stepon.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/macrop_driver.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/modal_aero_initialize_data.mod cmake/atm/CMakeFiles/atm.dir/modal_aero_initialize_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/lin_strat_chem.mod cmake/atm/CMakeFiles/atm.dir/lin_strat_chem.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/llnl_o1d_to_2oh_adj.mod cmake/atm/CMakeFiles/atm.dir/llnl_o1d_to_2oh_adj.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_photo.mod cmake/atm/CMakeFiles/atm.dir/mo_photo.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/lin_strat_chem.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/llnl_O1D_to_2OH_adj.F90.o.provides.build /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_photo.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero/aero_model.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o built in 0.878231 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/modal_aero_initialize_data.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/radiation.mod cmake/atm/CMakeFiles/atm.dir/radiation.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cloud_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o built in 0.416614 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/rrtmg/radiation.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cloud_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cloud_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cloud_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o built in 0.948649 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/vertical_diffusion.mod cmake/atm/CMakeFiles/atm.dir/vertical_diffusion.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/vertical_diffusion.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o built in 1.729916 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/aero_model.mod cmake/atm/CMakeFiles/atm.dir/aero_model.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/modal_aero/aero_model.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_usrrxt.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o built in 1.063103 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_usrrxt.mod cmake/atm/CMakeFiles/atm.dir/mo_usrrxt.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_usrrxt.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_gas_phase_chemdr.F90.o built in 0.961333 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_gas_phase_chemdr.mod cmake/atm/CMakeFiles/atm.dir/mo_gas_phase_chemdr.mod.stamp GNU /usr/bin/cmake -E touch 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-DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/clubb_intr.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o built in 0.600330 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_waccm_hrates.mod cmake/atm/CMakeFiles/atm.dir/mo_waccm_hrates.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_waccm_hrates.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg 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-I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/mo_chemini.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:63:45: stats_lh_sfc 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:62:44: type (stats), target, save :: stats_lh_zt, & 1 Warning: Legacy Extension: Duplicate SAVE attribute specified at (1) /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1680:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol_SILHS.F90:1693:13: do i=1,ns 1 Warning: Deleted feature: End expression in DO loop at (1) must be integer Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o built in 0.355464 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/mo_chemini.mod cmake/atm/CMakeFiles/atm.dir/mo_chemini.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/mo_chemini.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart/chemistry.F90 -o CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o built in 0.960399 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/chemistry.mod cmake/atm/CMakeFiles/atm.dir/chemistry.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/chemistry/mozart/chemistry.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/cam_diagnostics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o built in 1.674489 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol_silhs.mod cmake/atm/CMakeFiles/atm.dir/subcol_silhs.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol_SILHS.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/subcol.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o built in 0.589887 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/subcol.mod cmake/atm/CMakeFiles/atm.dir/subcol.mod.stamp GNU [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_mg_cam.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/micro_p3_interface.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/restart_physics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o built in 1.300829 seconds /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/subcol.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_diagnostics.mod cmake/atm/CMakeFiles/atm.dir/cam_diagnostics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/cam_diagnostics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o built in 0.757441 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/restart_physics.mod cmake/atm/CMakeFiles/atm.dir/restart_physics.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/restart_physics.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o built in 2.608835 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_p3_interface.mod cmake/atm/CMakeFiles/atm.dir/micro_p3_interface.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_p3_interface.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o built in 6.250934 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/micro_mg_cam.mod cmake/atm/CMakeFiles/atm.dir/micro_mg_cam.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/micro_mg_cam.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/microp_driver.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o built in 0.497375 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/microp_driver.mod cmake/atm/CMakeFiles/atm.dir/microp_driver.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/microp_driver.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam/physpkg.F90 -o CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/inidat.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o built in 0.555618 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/inidat.mod cmake/atm/CMakeFiles/atm.dir/inidat.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inidat.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/startup_initialconds.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o built in 0.341710 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/startup_initialconds.mod cmake/atm/CMakeFiles/atm.dir/startup_initialconds.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/startup_initialconds.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o built in 1.985500 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/physpkg.mod cmake/atm/CMakeFiles/atm.dir/physpkg.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/physics/cam/physpkg.F90.o.provides.build [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se/restart_dynamics.F90 -o CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/restart_dynamics.F90.o [ 96%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/dynamics/se/inital.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica 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-I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_restart.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o built in 0.643849 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_restart.mod cmake/atm/CMakeFiles/atm.dir/cam_restart.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_restart.F90.o.provides.build [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/runtime_opts.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o [ 97%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/cam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/clubb -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/silhs -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/dynamics/se -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/theta-l/share -I/home/jenkins/workspace/branch_e3sm_test/components/homme/src/share/compose -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/cpl -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/control -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/utils -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/usr/include -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/components/eam/src/control/cam_comp.F90 -o CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o Target CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o built in 0.508288 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/cam_comp.mod cmake/atm/CMakeFiles/atm.dir/cam_comp.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/cam_comp.F90.o.provides.build Target CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o built in 0.580394 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/atm/runtime_opts.mod cmake/atm/CMakeFiles/atm.dir/runtime_opts.mod.stamp GNU /usr/bin/cmake -E touch cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/control/runtime_opts.F90.o.provides.build [ 98%] Building Fortran object cmake/atm/CMakeFiles/atm.dir/__/__/eam/src/cpl/atm_comp_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DBIT64 -DCAM -DCLUBB_CAM -DCLUBB_REAL_TYPE=dp -DCLUBB_SGS -DCO2A -DCPRGNU -DE3SM -DFORTRANUNDERSCORE -DHAVE_COMM_F2C -DHAVE_F2003_PTR_BND_REMAP -DHAVE_GETTIMEOFDAY -DHAVE_MPI -DHAVE_NANOTIME -DHAVE_SLASHPROC -DHAVE_TIMES -DHAVE_VPRINTF -DHOMME_ENABLE_COMPOSE -DLSMLAT=1 -DLSMLON=1 -DLinux -DMAXPATCH_PFT=numpft+1 -DMCT_INTERFACE -DMODAL_AERO -DMODAL_AERO_3MODE -DMODEL_THETA_L -DNC=4 -DNDEBUG -DNO_LAPACK_ISNAN -DNO_R16 -DNP=4 -DNPG=0 -DN_RAD_CNST=30 -DPCNST=29 -DPCOLS=1 -DPLAT=1 -DPLEV=72 -DPLON=1 -DPPCOLS -DPSUBCOLS=4 -DPTRK=1 -DPTRM=1 -DPTRN=1 -DSILHS -DSPMD -DUWM_MISC -D_MPI -D_PRIM -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/atm/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.eam -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/pp_trop_mam3 -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/modal_aero -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/aerosol -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/mozart -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/chemistry/utils -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_mcica -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_lw -I/home/jenkins/workspace/branch_e3sm_test/components/eam/src/physics/rrtmg/ext/rrtmg_sw 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/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/jenkins/workspace/branch_e3sm_test/components /home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl/CMakeFiles/e3sm.exe.dir/DependInfo.cmake --color= Scanning dependencies of target e3sm.exe make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' make -f cmake/cpl/CMakeFiles/e3sm.exe.dir/build.make cmake/cpl/CMakeFiles/e3sm.exe.dir/build make[2]: Entering directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o built in 0.142823 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/t_drv_timers_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/t_drv_timers_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o built in 0.165785 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_type_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o.provides.build [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o built in 0.441350 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/mrg_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/mrg_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o built in 0.255033 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_type_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_type_mod.mod.stamp GNU [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o built in 0.320522 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_map_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_map_mod.mod.stamp GNU [ 98%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o built in 0.174704 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o built in 0.677060 seconds f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o built in 0.710360 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o built in 0.215911 seconds [ 99%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o built in 0.152266 seconds [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o built in 0.338154 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_flux_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_flux_mct.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_io_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_io_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_glc2lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_glc2lnd_mod.mod.stamp GNU Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o built in 1.139631 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2glc_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ice_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ice_mod.mod.stamp GNU f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/map_lnd2rof_irrig_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/map_lnd2rof_irrig_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_diag_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_diag_mct.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o built in 0.226324 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o built in 0.541323 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_atm_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_atm_mod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_wav_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_wav_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o.provides.build /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o built in 0.255011 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_lnd_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_lnd_mod.mod.stamp GNU /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o built in 0.273909 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/cplcomp_exchange_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/cplcomp_exchange_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o built in 0.152681 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_iac_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_iac_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o built in 0.430923 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_glc_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_glc_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o built in 0.404024 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_rof_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_rof_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o built in 0.833622 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_ocn_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_ocn_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90:19:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o built in 0.212896 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/prep_aoflux_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/prep_aoflux_mod.mod.stamp GNU [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o built in 0.358511 seconds Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o built in 0.377548 seconds /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_domain_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_domain_mct.mod.stamp GNU f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_frac_mct.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_frac_mct.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o.provides.build f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90:39:6: save 1 Warning: Legacy Extension: Blanket SAVE statement at (1) follows previous SAVE statement Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o built in 0.439134 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_rest_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_rest_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o built in 0.420804 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/component_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/component_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o.provides.build Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o built in 0.803308 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/seq_hist_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/seq_hist_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o built in 1.516507 seconds /usr/bin/cmake -E cmake_copy_f90_mod cmake/cpl/cime_comp_mod.mod cmake/cpl/CMakeFiles/e3sm.exe.dir/cime_comp_mod.mod.stamp GNU /usr/bin/cmake -E touch cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o.provides.build [100%] Building Fortran object cmake/cpl/CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -DCPRGNU -DFORTRANUNDERSCORE -DHAVE_MPI -DLinux -DMCT_INTERFACE -DNDEBUG -DNO_R16 -I/home/jenkins/workspace/branch_e3sm_test/components/cmake/cpl/. -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/usr/local/NETCDF-C-4.8.0-gfortran/include -I/usr/local/NETCDF-Fortran-4.5.3-gfortran/include -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/atm -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/lnd -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ice -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/ocn -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/rof -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/glc -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/wav -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/iac -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/esp -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/SourceMods/src.drv -I/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main -I/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/lnd/obj -mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -g -fbacktrace -O -ffree-form -DUSE_CONTIGUOUS= -c /home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90 -o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o f951: Warning: Nonexistent include directory ‘/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/mpas-source/src’ [-Wmissing-include-dirs] Target CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o built in 0.268852 seconds [100%] Linking Fortran executable /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe cd /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/cmake/cpl && /usr/bin/cmake -E cmake_link_script CMakeFiles/e3sm.exe.dir/link.txt --verbose=1 python /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/case_scripts/Tools/e3sm_compile_wrap.py /usr/local/mpi/MPICH-3.3.1-gfortran-8/bin/mpif90 -Wl,-rpath,/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -Wl,-rpath,/usr/local/NETCDF-C-4.8.0-gfortran/lib CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_comp_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cime_driver.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/component_type_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/cplcomp_exchange_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_glc2lnd_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2glc_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/map_lnd2rof_irrig_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/mrg_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_aoflux_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_atm_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_glc_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_iac_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ice_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_lnd_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_ocn_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_rof_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/prep_wav_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_diag_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_domain_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_flux_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_frac_mct.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_hist_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_io_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_map_type_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/seq_rest_mod.F90.o CMakeFiles/e3sm.exe.dir/home/jenkins/workspace/branch_e3sm_test/cime/src/drivers/mct/main/t_driver_timers_mod.F90.o -o /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe -L/usr/lib/gcc/x86_64-linux-gnu/10 ../atm/libatm.a ../lnd/liblnd.a ../ice/libice.a ../ocn/libocn.a ../rof/librof.a ../glc/libglc.a ../wav/libwav.a ../iac/libiac.a ../esp/libesp.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/lib/libcsm_share.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libmct.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libmpeu.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libpiof.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libpioc.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libgptl.a -L/usr/local/NETCDF-Fortran-4.5.3-gfortran/lib -lnetcdff -lnetcdf -L/usr/local/NETCDF-C-4.8.0-gfortran/lib -lnetcdf -L/usr/local/lapack-3.8.0 -llapack -lblas /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscontainers.a /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/gnu/mpich/nodebug/nothreads/mct/lib/libkokkoscore.a /usr/lib/x86_64-linux-gnu/libdl.so -lmpicxx -lrt -lpthread -ldl -lstdc++ Target /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe built in 1.266130 seconds make[2]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' [100%] Built target e3sm.exe make[1]: Leaving directory '/home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld' /usr/bin/cmake -E cmake_progress_start /home/jenkins/workspace/branch_e3sm_test/projects/scratch/SCM_runs/test_RICO/build/cmake-bld/CMakeFiles 0 real 178.61 user 534.87 sys 121.88 [Pipeline] sh + gzip -d 'projects/scratch/SCM_runs/test_RICO/run/atm.log.*.gz' gzip: projects/scratch/SCM_runs/test_RICO/run/atm.log.*.gz: No such file or directory [Pipeline] echo Not all logs were made for RICO. [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS